Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 0.0e+00 1115.9 598 100.0
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 4.3e-211 738.4 626 65.3
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 7.1e-190 667.9 510 69.0
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 7.2e-174 614.8 542 62.0
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.5e-168 597.0 581 58.3
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 4.2e-166 589.0 486 65.4
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 3.9e-164 582.4 560 58.2
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 3.7e-162 575.9 520 60.8
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.9e-158 563.5 522 60.7
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.7e-157 559.7 520 59.8
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 7.5e-155 551.6 527 58.8
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 1.7e-154 550.4 542 58.5
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 4.8e-154 548.9 494 61.5
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.2e-151 540.0 533 56.8
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 2.5e-150 536.6 597 53.3
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 2.3e-148 530.0 601 50.6
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 4.0e-148 529.3 438 64.6
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 4.0e-148 529.3 595 53.4
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.2e-147 527.7 547 55.9
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 1.5e-147 527.3 595 53.4
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 1.1e-145 521.2 499 58.3
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 1.1e-145 521.2 499 58.3
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.6e-144 517.3 418 65.8
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.6e-144 517.3 546 53.8
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 4.2e-142 509.2 548 54.6
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 1.4e-137 494.2 552 51.3
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 1.8e-137 493.8 487 55.4
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 7.0e-137 491.9 522 55.2
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 9.2e-137 491.5 556 51.8
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.2e-136 491.1 545 52.3
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 7.3e-134 481.9 544 52.8
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 2.6e-131 473.4 585 49.9
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 4.9e-130 469.2 520 51.5
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 1.1e-129 468.0 490 53.7
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.0e-128 463.8 519 51.3
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 2.0e-128 463.8 519 51.4
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 2.3e-127 460.3 518 50.6
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 5.0e-127 459.1 531 49.5
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 8.6e-127 458.4 544 53.7
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 8.6e-127 458.4 533 50.3
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 8.6e-127 458.4 433 58.9
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 1.1e-126 458.0 505 51.5
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 3.3e-126 456.4 533 50.1
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 4.3e-126 456.1 562 48.0
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 5.6e-126 455.7 499 51.3
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 5.6e-126 455.7 568 49.3
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 7.3e-126 455.3 554 50.2
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 7.3e-126 455.3 519 51.1
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 2.1e-125 453.8 549 48.6
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 1.8e-124 450.7 432 56.2
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 2.3e-124 450.3 563 48.1
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 4.0e-124 449.5 499 50.7
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 4.0e-124 449.5 548 48.9
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 5.2e-124 449.1 528 49.2
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 1.7e-122 444.1 565 48.1
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 6.4e-122 442.2 519 49.1
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 1.1e-121 441.4 526 48.9
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 3.2e-121 439.9 605 44.6
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 5.4e-121 439.1 418 56.0
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 7.0e-121 438.7 493 49.9
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 3.5e-120 436.4 513 49.3
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 4.6e-120 436.0 603 44.6
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 7.8e-120 435.3 414 58.9
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 3.9e-119 433.0 516 48.4
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 9.5e-118 428.3 514 49.0
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.2e-115 421.4 541 48.6
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 1.2e-115 421.4 484 49.0
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 9.8e-115 418.3 471 51.8
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 3.7e-114 416.4 493 49.7
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 6.4e-114 415.6 420 52.1
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 1.1e-113 414.8 549 47.5
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 1.2e-112 411.4 528 48.7
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 1.0e-111 408.3 594 43.9
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 1.3e-111 407.9 546 45.1
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 6.6e-111 405.6 509 47.7
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 6.6e-111 405.6 554 46.8
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 1.1e-110 404.8 575 44.7
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 1.6e-109 401.0 540 44.8
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 6.2e-109 399.1 502 48.2
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.2e-107 394.8 504 47.8
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 2.0e-107 394.0 467 48.4
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 2.4e-105 387.1 541 44.0
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 4.1e-105 386.3 586 42.2
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 1.6e-104 384.4 527 44.4
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 1.5e-102 377.9 525 45.1
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 1.9e-102 377.5 499 46.5
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 9.6e-102 375.2 375 55.2
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 1.6e-101 374.4 468 46.2
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 2.1e-101 374.0 465 44.9
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 6.4e-98 362.5 479 49.9
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.1e-97 361.7 373 56.8
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 1.6e-96 357.8 466 45.5
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 1.3e-95 354.8 493 44.2
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 3.9e-95 353.2 500 44.0
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.5e-94 351.3 499 43.7
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 1.9e-94 350.9 493 43.8
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 5.6e-94 349.4 501 43.9
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 5.6e-94 349.4 501 43.9
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 2.8e-93 347.1 529 41.6
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.1e-92 343.6 362 57.2
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.7e-90 337.8 493 41.2
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 1.1e-89 335.1 464 40.9
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 1.2e-88 331.6 532 39.8
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.3e-87 328.2 453 47.2
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 1.8e-87 327.8 311 60.8
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 7.4e-86 322.4 458 40.4
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 1.4e-84 318.2 494 41.3
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 5.8e-83 312.8 528 40.0
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 7.9e-80 302.4 527 38.3
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 1.3e-79 301.6 488 39.1
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.5e-73 280.8 241 58.1
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 7.4e-70 269.2 376 47.9
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.8e-69 267.3 384 49.2
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.0e-67 261.2 377 46.9
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.6e-61 241.5 221 56.1
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.0e-59 234.6 547 34.4
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.2e-58 231.1 289 52.2
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 1.4e-55 221.9 174 60.9
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 7.9e-48 196.1 374 38.8
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 2.2e-45 188.0 140 65.0
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.0e-42 179.1 358 33.5
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 7.2e-41 172.9 289 36.3
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.6e-40 170.6 227 48.9
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 3.0e-39 167.5 374 34.0
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 8.8e-39 166.0 323 34.1
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.6e-35 155.2 231 39.8
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 4.5e-35 153.7 286 34.6
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 5.0e-34 150.2 279 34.4
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.0e-31 141.0 87 71.3
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.0e-31 141.0 87 71.3
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 1.5e-30 138.7 133 50.4
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.3e-29 135.6 232 36.6
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 5.4e-28 130.2 281 33.1
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 1.7e-21 108.6 324 25.9
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 4.1e-20 104.0 149 44.3
FAN19G2927 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.0e-19 101.7 124 50.8
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.9e-19 100.1 172 44.8
FAN26G2475 Fragaria x ananassa HOM05D004947 ORTHO05D006077 8.6e-18 96.3 124 49.2
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 9.5e-17 92.8 272 27.9
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-16 90.5 258 27.1
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 6.1e-16 90.1 266 27.1
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 6.1e-16 90.1 266 27.1
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 7.5e-14 83.2 312 25.3
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 7.5e-14 83.2 312 25.3
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 7.5e-14 83.2 312 25.3
FAN28G1315 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.4e-13 80.1 117 46.2
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 4.3e-09 67.4 55 50.9


User provided reference genes

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