Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 0.0e+00 1180.2 614 100.0
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 2.9e-287 991.5 599 86.3
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 2.4e-273 945.3 590 82.2
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 2.0e-251 872.5 590 76.4
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 6.3e-250 867.5 593 76.4
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 8.2e-250 867.1 591 76.3
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 9.1e-249 863.6 582 76.3
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 4.5e-248 861.3 588 76.5
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 1.9e-246 855.9 603 73.5
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 2.5e-246 855.5 593 75.4
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 5.5e-246 854.4 592 74.7
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 9.4e-246 853.6 584 76.2
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 1.2e-243 846.7 588 74.0
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 7.5e-243 844.0 593 73.7
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 1.7e-242 842.8 593 74.4
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 6.3e-242 840.9 592 73.6
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 6.3e-242 840.9 584 74.7
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 1.4e-241 839.7 584 73.3
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 5.3e-241 837.8 590 73.6
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 2.9e-239 832.0 603 72.1
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 2.1e-237 825.9 589 72.0
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 1.8e-236 822.8 584 72.4
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 2.0e-235 819.3 584 73.1
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 2.6e-235 818.9 596 73.0
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 4.4e-235 818.1 589 72.0
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 4.4e-235 818.1 586 72.2
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 2.2e-234 815.8 587 71.9
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 3.7e-234 815.1 586 72.0
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 6.3e-234 814.3 597 70.5
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 1.1e-233 813.5 584 72.3
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 7.0e-233 810.8 584 73.6
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 9.1e-233 810.4 589 71.3
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 2.7e-232 808.9 594 70.4
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 3.5e-232 808.5 602 70.3
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 4.5e-232 808.1 584 72.1
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 5.9e-232 807.7 590 71.2
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 5.9e-232 807.7 594 70.2
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 1.0e-231 807.0 594 70.5
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 1.0e-231 807.0 597 70.2
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 3.8e-231 805.1 594 69.7
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 1.9e-230 802.7 584 71.6
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 7.2e-230 800.8 587 70.5
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 1.2e-229 800.0 584 70.5
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 2.1e-229 799.3 517 79.1
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 2.8e-229 798.9 594 69.4
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 4.7e-229 798.1 584 72.3
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 8.0e-229 797.3 584 70.7
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 8.0e-229 797.3 605 69.6
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 1.5e-227 793.1 584 70.9
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 2.6e-227 792.3 598 69.4
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 1.3e-226 790.0 620 66.8
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 1.7e-226 789.6 591 70.4
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 1.7e-226 789.6 584 70.0
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 2.2e-226 789.3 597 68.8
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 2.2e-226 789.3 598 69.2
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 7.8e-224 780.8 584 69.3
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 1.3e-223 780.0 584 69.2
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 1.7e-223 779.6 597 68.3
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 2.9e-223 778.9 585 69.4
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 2.9e-223 778.9 580 68.8
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 3.8e-223 778.5 592 68.4
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 1.6e-221 773.1 586 68.9
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 2.8e-221 772.3 586 68.8
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 2.8e-221 772.3 582 69.8
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 2.8e-221 772.3 588 68.4
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 1.0e-220 770.4 585 69.2
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 1.8e-220 769.6 585 68.7
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.5e-219 766.5 623 66.0
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 2.6e-219 765.8 623 65.8
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 1.3e-215 753.4 584 67.1
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 3.3e-214 748.8 591 66.5
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 3.3e-214 748.8 588 67.7
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 9.5e-214 747.3 615 66.7
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 3.6e-213 745.3 586 69.3
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 6.8e-212 741.1 601 65.9
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 1.1e-209 733.8 539 71.4
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 9.2e-209 730.7 588 65.1
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 3.0e-207 725.7 533 70.2
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 7.3e-206 721.1 603 62.9
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 2.8e-205 719.2 545 70.3
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 4.7e-205 718.4 597 64.2
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 2.0e-203 713.0 584 66.1
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 2.6e-203 712.6 598 64.7
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 1.1e-198 697.2 584 65.4
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 5.6e-190 668.3 574 62.5
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 5.6e-190 668.3 648 59.4
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.2e-189 667.2 485 71.1
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 3.1e-188 662.5 608 58.1
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 2.7e-184 649.4 584 61.5
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 1.5e-182 643.7 804 48.9
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 1.6e-181 640.2 476 68.5
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 3.6e-181 639.0 626 57.7
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 7.6e-171 604.7 584 56.3
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 2.0e-163 580.1 607 55.0
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 4.6e-160 568.9 595 52.9
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 5.3e-156 555.4 502 60.0
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.0e-147 526.9 436 62.8
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 9.4e-145 518.1 485 56.3
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 7.7e-139 498.4 423 64.8
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 2.6e-131 473.4 435 57.7
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 7.5e-110 402.1 345 60.6
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 8.0e-104 382.1 365 53.4
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 6.8e-79 299.3 448 41.5
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 4.4e-78 296.6 237 60.8
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 1.7e-77 294.7 319 50.2
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 6.6e-66 256.1 285 53.0
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 4.6e-59 233.4 378 39.9
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 1.0e-58 232.3 249 53.8
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 2.4e-47 194.5 158 63.9
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 9.3e-44 182.6 112 83.0
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 2.3e-42 177.9 110 82.7
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 8.7e-42 176.0 167 59.3
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-40 171.4 379 33.2
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 9.0e-39 166.0 115 74.8
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 2.5e-36 157.9 145 57.2
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 1.2e-35 155.6 147 53.7
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 2.7e-35 154.5 108 73.1
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 5.1e-34 150.2 95 77.9
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 1.4e-31 142.1 90 72.2
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 2.0e-30 138.3 79 84.8
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 5.0e-29 133.7 102 65.7
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 5.0e-29 133.7 95 71.6
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 5.9e-22 110.2 96 61.5
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 1.7e-21 108.6 84 64.3
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 5.5e-20 103.6 92 60.9
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 1.4e-18 99.0 64 73.4
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 3.0e-18 97.8 147 42.2
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 5.3e-15 87.0 50 80.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 5.3e-15 87.0 50 80.0
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 1.2e-14 85.9 198 36.9
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 3.5e-14 84.3 127 41.7
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 4.5e-14 84.0 61 68.9
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 5.9e-14 83.6 67 59.7
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 1.7e-13 82.0 92 54.3
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 6.5e-13 80.1 50 74.0
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 5.2e-10 70.5 62 50.0
Glyma.16G121250 Glycine max HOM05D001598 ORTHO05D046738 9.8e-09 66.2 75 56.0
TWI56G1164 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 5.9e-06 57.0 49 55.1


User provided reference genes

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