Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 2136.7 1110 100.0
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1892.5 1126 87.5
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1852.0 1125 86.4
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1789.2 1129 83.6
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1752.6 1130 82.3
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1728.0 1153 80.5
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1728.0 1124 81.6
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1681.8 1135 77.5
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1664.8 1132 76.9
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1588.9 1138 74.3
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1587.8 1137 73.6
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1580.1 1140 73.0
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1573.5 1138 71.9
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1572.4 1134 71.8
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1568.9 1134 73.5
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1564.3 1142 72.7
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1561.6 1139 71.6
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1560.8 1137 72.2
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1555.0 1135 73.0
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1553.5 1148 72.4
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1552.3 1146 72.8
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1548.1 1126 71.4
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1546.6 1136 71.9
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1545.8 1126 71.0
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1540.8 1140 71.5
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1534.2 1135 70.7
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1532.3 1133 70.2
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1530.4 1145 71.7
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1527.7 1134 71.9
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1527.7 1134 70.5
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1526.9 1126 70.2
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1526.5 1130 70.6
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1521.1 1131 70.0
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1516.9 1136 70.3
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1512.3 1146 71.3
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1510.0 1146 71.5
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1505.0 1130 69.2
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1497.3 1133 69.6
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1496.5 1137 70.5
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1492.6 1140 70.2
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1489.2 1133 70.8
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1479.2 1137 70.0
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1477.2 1149 68.7
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1457.2 1138 69.0
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1432.5 1090 70.6
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1428.7 1085 69.3
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1428.3 1088 70.1
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1426.0 1128 66.3
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1423.3 1139 65.8
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1418.3 1140 66.1
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1411.0 1138 67.2
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1411.0 1096 69.9
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1399.4 1144 66.6
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1392.1 1143 65.7
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1391.3 1138 66.5
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 1389.0 1141 65.8
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 1377.8 1151 64.8
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1373.2 1196 63.4
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1367.1 1142 65.6
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1365.1 1145 64.3
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1359.4 1142 64.2
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1359.0 1161 64.5
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1357.4 1145 64.0
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1352.4 1150 63.2
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1349.3 1144 63.8
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1349.3 1094 65.2
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1348.2 1153 62.7
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1348.2 1144 64.1
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1341.6 1133 65.5
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1338.6 1150 63.5
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1332.4 1113 65.5
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1332.4 1100 65.2
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1324.7 1019 70.8
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1316.2 1085 64.7
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1314.7 1144 62.5
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1308.1 1098 64.1
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1302.7 1128 62.3
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1293.5 1098 63.8
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1288.5 1086 63.8
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1288.5 1088 63.1
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1281.2 1101 62.7
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1277.7 1103 62.5
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 0.0e+00 1273.5 1014 69.3
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1268.4 1276 57.5
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1266.9 1102 62.3
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1260.4 1087 63.1
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1239.2 1089 61.9
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 0.0e+00 1233.8 963 68.2
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1230.3 943 67.7
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1226.8 944 67.7
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1194.5 1106 58.3
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1174.8 1107 57.2
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1157.5 1132 58.5
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 0.0e+00 1154.0 1109 59.7
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1149.0 1350 51.8
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1130.5 948 63.8
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 0.0e+00 1127.5 1140 56.6
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 0.0e+00 1126.3 1077 58.1
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 0.0e+00 1105.9 933 64.2
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 4.0e-303 1045.0 1019 58.8
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 4.7e-288 995.0 899 63.3
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 1.3e-285 986.9 1047 55.0
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 6.7e-250 868.2 801 61.2
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 3.9e-242 842.4 987 52.8
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 3.1e-239 832.8 806 58.4
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 2.1e-235 820.1 901 55.2
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 3.7e-232 809.3 635 65.0
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 2.6e-230 803.1 648 67.7
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 9.4e-228 794.7 1137 42.0
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 1.2e-227 794.3 1129 42.0
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 1.2e-227 794.3 904 52.9
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 2.6e-225 786.6 1104 42.2
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 7.4e-225 785.0 1128 42.1
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 4.2e-220 769.2 1120 41.4
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 6.3e-216 755.4 640 63.8
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.2e-203 714.5 520 69.6
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 4.7e-195 686.0 1049 39.2
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 1.4e-183 647.9 525 64.8
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 4.0e-178 629.8 420 77.4
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 1.2e-177 628.2 420 77.4
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 4.9e-160 569.7 519 60.1
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 1.8e-149 534.6 491 61.3
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 3.7e-139 500.4 401 68.1
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.1e-122 445.7 338 68.6
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 1.9e-111 408.3 681 39.5
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 1.0e-104 386.0 343 60.6
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 8.0e-102 376.3 827 32.2
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 5.2e-101 373.6 228 80.7
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 6.3e-91 340.1 322 59.6
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 2.3e-85 321.6 354 51.4
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 6.8e-85 320.1 230 74.8
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 2.3e-80 305.1 186 80.1
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 8.0e-78 296.6 515 39.6
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 1.1e-71 276.2 190 76.3
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 6.2e-70 270.4 1093 24.3
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 1.1e-61 243.0 198 62.6
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 4.0e-61 241.1 1298 22.1
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.0e-56 226.5 167 79.0
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 1.0e-56 226.5 167 79.0
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 1.3e-56 226.1 141 80.9
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 3.6e-54 218.0 141 78.7
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 3.6e-54 218.0 547 32.5
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 4.0e-53 214.5 145 75.2
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 5.8e-52 210.7 241 51.0
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 5.8e-52 210.7 131 84.0
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 2.3e-48 198.7 256 47.3
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 2.8e-46 191.8 128 82.0
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 1.1e-45 189.9 102 89.2
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.4e-45 189.5 102 88.2
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.5e-44 186.0 131 75.6
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 2.6e-44 185.3 140 72.1
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 2.6e-44 185.3 123 75.6
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 9.0e-37 160.2 192 53.6
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 7.6e-36 157.1 111 73.9
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 1.7e-35 156.0 104 72.1
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 2.2e-35 155.6 82 89.0
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 8.4e-35 153.7 83 88.0
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 1.9e-34 152.5 108 68.5
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 2.7e-33 148.7 83 84.3
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 4.6e-33 147.9 1168 21.0
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 4.6e-33 147.9 112 70.5
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 6.9e-29 134.0 88 87.5
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 5.8e-28 131.0 162 51.2
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 2.4e-26 125.6 96 66.7
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 1.8e-24 119.4 115 57.4
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 1.8e-24 119.4 119 58.8
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 3.9e-24 118.2 111 57.7
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 3.7e-22 111.7 85 65.9
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 4.5e-20 104.8 95 60.0
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 2.2e-19 102.4 119 48.7
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 1.9e-18 99.4 153 40.5
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 4.6e-17 94.7 87 54.0
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 1.5e-12 79.7 80 57.5
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 1.8e-08 66.2 43 72.1
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 5.1e-08 64.7 45 64.4
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 1.5e-07 63.2 59 59.3


User provided reference genes

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