Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G100100 Prunus persica HOM05D005643 ORTHO05D006819 1.6e-138 496.1 253 100.0
Cfa011331 Carpinus fangiana HOM05D005643 ORTHO05D006819 3.6e-119 431.8 254 86.2
FvH4_3g32570 Fragaria vesca HOM05D005643 ORTHO05D006819 2.6e-117 425.6 251 85.3
FAN11G2689 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.4e-115 419.9 256 83.6
QL01p022418 Quercus lobata HOM05D005643 ORTHO05D006819 3.2e-115 418.7 252 83.7
Dinv32759 Davidia involucrata HOM05D005643 ORTHO05D006819 4.2e-115 418.3 250 84.4
RcHm_v2.0_Chr5g0059641 Rosa chinensis HOM05D005643 ORTHO05D006819 4.6e-114 414.8 265 80.4
MD11G1133800 Malus domestica HOM05D005643 ORTHO05D006819 6.0e-114 414.5 271 80.4
TAR633G1751 Trochodendron aralioides HOM05D005643 ORTHO05D006819 6.7e-113 411.0 251 81.7
Ciclev10029093m.g Citrus clementina HOM05D005643 ORTHO05D006819 1.1e-112 410.2 259 80.7
FAN21G1883 Fragaria x ananassa HOM05D005643 ORTHO05D006819 1.5e-112 409.8 269 79.6
FAN16G3648 Fragaria x ananassa HOM05D005643 ORTHO05D006819 4.3e-112 408.3 256 82.0
TWI75G1433 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 4.3e-112 408.3 254 80.3
CiPaw.13G111900 Carya illinoinensis HOM05D005643 ORTHO05D006819 1.3e-111 406.8 254 83.1
Thecc.09G257100 Theobroma cacao HOM05D005643 ORTHO05D006819 1.6e-111 406.4 254 79.9
TPR.G13337 Trifolium pratense HOM05D005643 ORTHO05D006819 2.1e-111 406.0 253 81.4
Lalb_Chr19g0124481 Lupinus albus HOM05D005643 ORTHO05D006819 1.4e-110 403.3 253 78.3
Atru.chr3.3643 Acer truncatum HOM05D005643 ORTHO05D006819 3.1e-110 402.1 253 81.0
Medtr4g015590 Medicago truncatula HOM05D005643 ORTHO05D006819 3.1e-110 402.1 253 80.2
arahy.Tifrunner.gnm1.ann1.X5NJ7E Arachis hypogaea HOM05D005643 ORTHO05D006819 4.0e-110 401.7 255 79.2
Glyma.01G116100 Glycine max HOM05D005643 ORTHO05D006819 1.2e-109 400.2 259 78.4
Eucgr.B02489 Eucalyptus grandis HOM05D005643 ORTHO05D006819 2.0e-109 399.4 251 80.9
Potri.009G012700 Populus trichocarpa HOM05D005643 ORTHO05D006819 2.0e-109 399.4 255 80.4
Sabra09G0008500 Salix brachista HOM05D005643 ORTHO05D006819 2.0e-109 399.4 254 79.1
TWI79G0673 Tripterygium wilfordii HOM05D005643 ORTHO05D006819 2.6e-109 399.1 251 80.9
Gohir.D05G076900 Gossypium hirsutum HOM05D005643 ORTHO05D006819 3.4e-109 398.7 254 78.3
Manes.04G022200 Manihot esculenta HOM05D005643 ORTHO05D006819 7.6e-109 397.5 250 79.2
Gorai.009G078300 Gossypium raimondii HOM05D005643 ORTHO05D006819 9.9e-109 397.1 254 78.0
Gohir.A05G074000 Gossypium hirsutum HOM05D005643 ORTHO05D006819 1.7e-108 396.4 254 78.0
Rhsim13G0093700 Rhododendron simsii HOM05D005643 ORTHO05D006819 1.7e-108 396.4 250 80.8
GSVIVG01025172001 Vitis vinifera HOM05D005643 ORTHO05D006819 1.1e-107 393.7 251 80.1
Glyma.03G060100 Glycine max HOM05D005643 ORTHO05D006819 2.4e-107 392.5 255 77.6
Lj3g0018588 Lotus japonicus HOM05D005643 ORTHO05D006819 2.4e-107 392.5 252 77.0
Cc01_g11250 Coffea canephora HOM05D005643 ORTHO05D006819 6.0e-106 387.9 251 77.7
Phvul.010G001900 Phaseolus vulgaris HOM05D005643 ORTHO05D006819 6.0e-106 387.9 254 77.6
Duzib150G0959 Durio zibethinus HOM05D005643 ORTHO05D006819 1.0e-105 387.1 254 76.8
Migut.D02214 Erythranthe guttata HOM05D005643 ORTHO05D006819 1.0e-105 387.1 248 77.8
Migut.D02210 Erythranthe guttata HOM05D005643 ORTHO05D006819 1.3e-105 386.7 248 77.8
Psat7g245880 Pisum sativum HOM05D005643 ORTHO05D006819 1.3e-105 386.7 256 78.1
Nn2g10757 Nelumbo nucifera HOM05D005643 ORTHO05D006819 1.5e-104 383.3 251 78.5
MSTRG.21131 Avicennia marina HOM05D005643 ORTHO05D006819 1.9e-104 382.9 249 77.1
THA.LOC104814830 Tarenaya hassleriana HOM05D005643 ORTHO05D006819 1.9e-104 382.9 253 77.9
Oeu059095.1 Olea europaea HOM05D005643 ORTHO05D006819 2.5e-104 382.5 250 76.0
arahy.Tifrunner.gnm1.ann1.9U2L6D Arachis hypogaea HOM05D005643 ORTHO05D006819 3.3e-104 382.1 253 76.7
CAN.G1001.26 Capsicum annuum HOM05D005643 ORTHO05D006819 1.6e-103 379.8 251 76.5
AT5G60540 Arabidopsis thaliana HOM05D005643 ORTHO05D006819 2.1e-103 379.4 254 76.4
Duzib170G0435 Durio zibethinus HOM05D005643 ORTHO05D006819 2.8e-103 379.0 252 75.8
Duzib170G0739 Durio zibethinus HOM05D005643 ORTHO05D006819 2.8e-103 379.0 252 75.8
AL8G37130 Arabidopsis lyrata HOM05D005643 ORTHO05D006819 3.7e-103 378.6 254 75.6
Nitab4.5_0006757g0010 Nicotiana tabacum HOM05D005643 ORTHO05D006819 3.7e-103 378.6 251 74.9
A10p17720 Brassica napus HOM05D005643 ORTHO05D006819 6.2e-103 377.9 254 76.4
BraA10t43851Z Brassica rapa HOM05D005643 ORTHO05D006819 6.2e-103 377.9 254 76.4
MD03G1113000 Malus domestica HOM05D005643 ORTHO05D006819 6.2e-103 377.9 245 80.8
C09p53180 Brassica napus HOM05D005643 ORTHO05D006819 8.2e-103 377.5 254 76.0
BolC9t58193H Brassica oleracea HOM05D005643 ORTHO05D006819 8.2e-103 377.5 254 76.0
BcaB08g36348 Brassica carinata HOM05D005643 ORTHO05D006819 1.1e-102 377.1 254 76.0
Sed0015117 Sechium edule HOM05D005643 ORTHO05D006819 1.1e-102 377.1 251 76.9
Carub.0008s2123 Capsella rubella HOM05D005643 ORTHO05D006819 1.8e-102 376.3 254 76.0
MELO3C025766.2 Cucumis melo HOM05D005643 ORTHO05D006819 3.1e-102 375.6 251 76.9
SGA_v2.0_scaffold97G29210 Striga asiatica HOM05D005643 ORTHO05D006819 3.1e-102 375.6 250 75.6
Aqoxy1G03172 Aquilegia oxysepala HOM05D005643 ORTHO05D006819 4.0e-102 375.2 250 77.2
Aa31LG1G12530 Aethionema arabicum HOM05D005643 ORTHO05D006819 5.3e-102 374.8 253 75.5
SalBow5G2340 Salvia bowleyana HOM05D005643 ORTHO05D006819 5.3e-102 374.8 250 74.8
arahy.Tifrunner.gnm1.ann1.QSC7KM Arachis hypogaea HOM05D005643 ORTHO05D006819 1.2e-101 373.6 305 66.6
Peaxi162Scf00270g00108 Petunia axillaris HOM05D005643 ORTHO05D006819 1.5e-101 373.2 251 75.3
Lj1A190T89 Lonicera japonica HOM05D005643 ORTHO05D006819 2.6e-101 372.5 252 75.8
PGR102G1730 Punica granatum HOM05D005643 ORTHO05D006819 3.4e-101 372.1 252 75.4
Sp6g22110 Schrenkiella parvula HOM05D005643 ORTHO05D006819 1.7e-100 369.8 254 75.2
CARHR274200 Cardamine hirsuta HOM05D005643 ORTHO05D006819 2.2e-100 369.4 254 74.8
Lalb_Chr03g0043331 Lupinus albus HOM05D005643 ORTHO05D006819 3.8e-100 368.6 237 75.1
DCAR_006056 Daucus carota HOM05D005643 ORTHO05D006819 8.4e-100 367.5 250 76.0
Sc06g0010070 Simmondsia chinensis HOM05D005643 ORTHO05D006819 8.4e-100 367.5 250 72.0
BolC2t07247H Brassica oleracea HOM05D005643 ORTHO05D006819 5.5e-99 364.8 253 74.3
PGSC0003DMG400008060 Solanum tuberosum HOM05D005643 ORTHO05D006819 2.7e-98 362.5 251 72.1
CsaV3_6G013840 Cucumis sativus L. HOM05D005643 ORTHO05D006819 3.5e-98 362.1 251 75.3
Solyc11g069290.2 Solanum lycopersicum HOM05D005643 ORTHO05D006819 4.6e-98 361.7 251 72.1
Sopen11g028020 Solanum pennellii HOM05D005643 ORTHO05D006819 6.0e-98 361.3 251 72.1
Nitab4.5_0000650g0110 Nicotiana tabacum HOM05D005643 ORTHO05D006819 7.9e-98 360.9 274 68.2
CAN.G631.16 Capsicum annuum HOM05D005643 ORTHO05D006819 2.3e-97 359.4 251 73.3
VMungo0331G1810 Vigna mungo HOM05D005643 ORTHO05D006819 6.7e-97 357.8 238 75.6
HanXRQChr01g0018371 Helianthus annuus HOM05D005643 ORTHO05D006819 1.9e-96 356.3 256 71.9
ATR0115G033 Amborella trichopoda HOM05D005643 ORTHO05D006819 5.7e-96 354.8 254 72.0
ECA248G1947 Erigeron canadensis HOM05D005643 ORTHO05D006819 5.7e-96 354.8 255 71.0
EL10Ac9g22501 Beta vulgaris HOM05D005643 ORTHO05D006819 3.7e-95 352.1 260 69.6
Hma1.2p1_1030F.1_g249820 Hydrangea macrophylla HOM05D005643 ORTHO05D006819 3.7e-95 352.1 236 75.0
PSO339G3071 Papaver somniferum HOM05D005643 ORTHO05D006819 1.1e-94 350.5 252 70.6
PSO384G4957 Papaver somniferum HOM05D005643 ORTHO05D006819 1.4e-94 350.1 252 70.6
Thhalv10014160m.g Eutrema salsugineum HOM05D005643 ORTHO05D006819 1.8e-94 349.7 249 72.7
unitig_0.g1517 Utricularia gibba HOM05D005643 ORTHO05D006819 2.0e-93 346.3 249 70.7
MBI07_g41453_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 3.4e-93 345.5 237 75.1
AUR62039626 Chenopodium quinoa HOM05D005643 ORTHO05D006819 1.0e-92 344.0 258 69.8
AUR62024993 Chenopodium quinoa HOM05D005643 ORTHO05D006819 6.5e-92 341.3 258 67.8
HPP92_025849 Vanilla planifolia HOM05D005643 ORTHO05D006819 1.4e-91 340.1 249 68.3
Os02g0130100 Oryza sativa ssp. japonica HOM05D005643 ORTHO05D006819 5.5e-91 338.2 256 68.0
BcaB08g36349 Brassica carinata HOM05D005643 ORTHO05D006819 7.2e-91 337.8 240 72.9
SEGI_15740 Sequoiadendron giganteum HOM05D005643 ORTHO05D006819 1.5e-88 330.1 250 66.0
AagrBONN_evm.TU.Sc2ySwM_117.2790 Anthoceros agrestis HOM05D005643 ORTHO05D006819 2.2e-87 326.2 250 66.0
Actinidia03737 Actinidia chinensis HOM05D005643 ORTHO05D006819 3.1e-86 322.4 203 79.3
CSS0039600 Camellia sinensis var. sinensis HOM05D005643 ORTHO05D006819 5.9e-85 318.2 254 67.7
Lsat_1_v5_gn_1_65480 Lactuca sativa HOM05D005643 ORTHO05D006819 5.9e-85 318.2 254 67.3
Mapoly0081s0077 Marchantia polymorpha HOM05D005643 ORTHO05D006819 7.4e-80 301.2 252 64.3
Actinidia24093 Actinidia chinensis HOM05D005643 ORTHO05D006819 9.7e-80 300.8 199 75.9
Nn2g13073 Nelumbo nucifera HOM05D001952 ORTHO05D005047 6.3e-79 298.1 176 84.7
Pp3c19_5510 Physcomitrium patens HOM05D005643 ORTHO05D006819 8.2e-79 297.7 253 62.1
SMO364G0700 Selaginella moellendorffii HOM05D005643 ORTHO05D006819 4.5e-77 292.0 251 61.4
arahy.Tifrunner.gnm1.ann1.J7FTHV Arachis hypogaea HOM05D005643 ORTHO05D006819 2.2e-76 289.7 234 66.2
Pp3c18_20140 Physcomitrium patens HOM05D005643 ORTHO05D006819 3.8e-76 288.9 254 60.6
MD03G1113200 Malus domestica HOM05D005643 ORTHO05D006819 2.5e-75 286.2 176 83.0
C02p11600 Brassica napus HOM05D005643 ORTHO05D006819 1.2e-74 283.9 205 70.2
Ca_09130_v3 Cicer arietinum L. HOM05D005643 ORTHO05D006819 3.3e-72 275.8 184 76.1
Oeu002854.1 Olea europaea HOM05D005643 ORTHO05D006819 9.7e-72 274.2 192 72.9
Zm00001eb208970 Zea mays HOM05D005643 ORTHO05D006819 1.7e-71 273.5 164 80.5
vmacro03191 Vaccinium macrocarpon HOM05D005643 ORTHO05D006819 1.9e-67 260.0 249 59.0
CBR_g31179 Chara braunii HOM05D005643 ORTHO05D006819 7.5e-64 248.1 245 55.1
BcaC04g19711 Brassica carinata HOM05D005643 ORTHO05D006819 1.4e-62 243.8 254 57.1
MBI07_g42630_MAGBIO Magnolia biondii HOM05D005643 ORTHO05D006819 7.0e-62 241.5 218 61.9
Cre03.g167051 Chlamydomonas reinhardtii HOM05D005643 ORTHO05D006819 2.9e-60 236.1 225 56.4
MCO05G014 Micromonas commoda HOM05D005643 ORTHO05D006819 1.5e-56 223.8 255 50.6
Haze_23864 Corylus avellana HOM05D005643 ORTHO05D006819 3.5e-53 212.6 140 80.0
BcaC03g13961 Brassica carinata HOM05D005643 ORTHO05D006819 1.3e-52 210.7 167 64.7
Lj2A1030T57 Lonicera japonica HOM05D005643 ORTHO05D006819 1.3e-52 210.7 113 89.4
CiPaw.13G111500 Carya illinoinensis HOM05D005643 ORTHO05D006819 1.4e-46 190.7 140 74.3
TAR636G3455 Trochodendron aralioides HOM05D005643 ORTHO05D006819 1.4e-46 190.7 105 85.7
Oeu002855.1 Olea europaea HOM05D005643 ORTHO05D006819 2.9e-44 183.0 147 65.3
Cfa022863 Carpinus fangiana HOM05D005643 ORTHO05D006819 4.4e-40 169.1 271 40.2
Rhsim06G0101300 Rhododendron simsii HOM05D005643 ORTHO05D006819 1.3e-28 131.0 99 69.7
BraA02t05718Z Brassica rapa HOM05D005643 ORTHO05D006819 5.6e-27 125.6 67 83.6
SHI06096 Sapria himalayana HOM05D005643 ORTHO05D006819 1.2e-24 117.9 137 48.9
Cpa.g.sc216.17 Carica papaya HOM05D005643 ORTHO05D006819 1.1e-22 111.3 57 87.7
Dinv12496 Davidia involucrata HOM05D005643 ORTHO05D006819 1.9e-22 110.5 75 76.0
SHI06095 Sapria himalayana HOM05D005643 ORTHO05D006819 3.5e-21 106.3 72 68.1
ClCG02G021090 Citrullus lanatus HOM05D005643 ORTHO05D006819 9.5e-19 98.2 75 73.3
Cpa.g.sc216.18 Carica papaya HOM05D005643 ORTHO05D006819 3.1e-17 93.2 76 67.1
TAR636G0837 Trochodendron aralioides HOM05D005643 ORTHO05D006819 4.0e-17 92.8 78 64.1
Lj2A1030T58 Lonicera japonica HOM05D005643 ORTHO05D006819 1.5e-16 90.9 70 65.7
SHI06094 Sapria himalayana HOM05D000105 ORTHO05D000023 6.2e-10 68.9 58 67.2
Rhsim13G0093600 Rhododendron simsii HOM05D000699 ORTHO05D000519 9.0e-09 65.1 43 72.1
TAR005G0002 Trochodendron aralioides HOM05D005643 ORTHO05D006819 3.4e-08 63.2 72 54.2


User provided reference genes

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