Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G095400 Prunus persica HOM05D002376 ORTHO05D008821 7.9e-74 280.4 148 100.0
MD11G1061300 Malus domestica HOM05D002376 ORTHO05D008821 2.8e-47 192.2 152 68.4
Prupe.6G044100 Prunus persica HOM05D002376 ORTHO05D008821 2.7e-45 185.7 152 65.8
RcHm_v2.0_Chr5g0072361 Rosa chinensis HOM05D002376 ORTHO05D008821 6.5e-44 181.0 150 64.0
Cfa010938 Carpinus fangiana HOM05D002376 ORTHO05D008821 5.5e-43 177.9 142 65.5
FvH4_3g40170 Fragaria vesca HOM05D002376 ORTHO05D008821 1.8e-41 172.9 149 62.4
Manes.18G140300 Manihot esculenta HOM05D002376 ORTHO05D008821 1.5e-40 169.9 149 64.4
Haze_24442 Corylus avellana HOM05D002376 ORTHO05D008821 4.4e-40 168.3 142 62.7
CANSAT54G2364 Cannabis sativa HOM05D002376 ORTHO05D008821 9.8e-40 167.2 146 60.3
CiPaw.13G066200 Carya illinoinensis HOM05D002376 ORTHO05D008821 4.9e-39 164.9 152 59.9
TWI75G1859 Tripterygium wilfordii HOM05D002376 ORTHO05D008821 2.4e-38 162.5 146 60.3
COL.COLO4_11184 Corchorus olitorius HOM05D002376 ORTHO05D008821 3.5e-37 158.7 149 59.7
GSVIVG01024598001 Vitis vinifera HOM05D002376 ORTHO05D008821 7.8e-37 157.5 143 58.7
Dinv28710 Davidia involucrata HOM05D002376 ORTHO05D008821 1.0e-36 157.1 131 64.9
PGR102G2282 Punica granatum HOM05D002376 ORTHO05D008821 1.0e-36 157.1 156 55.8
CSS0028475 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 1.7e-36 156.4 153 59.5
vmacro02895 Vaccinium macrocarpon HOM05D002376 ORTHO05D008821 6.6e-36 154.5 149 59.1
QL03p067094 Quercus lobata HOM05D002376 ORTHO05D008821 8.6e-36 154.1 155 55.5
Thecc.09G361000 Theobroma cacao HOM05D002376 ORTHO05D008821 1.9e-35 152.9 149 57.7
TPR.G17753 Trifolium pratense HOM05D002376 ORTHO05D008821 3.3e-35 152.1 120 65.0
Medtr5g074880 Medicago truncatula HOM05D002376 ORTHO05D008821 5.6e-35 151.4 120 64.2
Lj1A123G47 Lonicera japonica HOM05D002376 ORTHO05D008821 7.3e-35 151.0 122 65.6
TAR623G0666 Trochodendron aralioides HOM05D002376 ORTHO05D008821 9.5e-35 150.6 122 62.3
CSS0003249 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 1.2e-34 150.2 122 59.0
arahy.Tifrunner.gnm1.ann1.F02FPT Arachis hypogaea HOM05D002376 ORTHO05D008821 2.1e-34 149.4 147 55.8
DCAR_014464 Daucus carota HOM05D002376 ORTHO05D008821 2.8e-34 149.1 123 62.6
Duzib168G1911 Durio zibethinus HOM05D002376 ORTHO05D008821 2.8e-34 149.1 149 55.7
Eucgr.B04014 Eucalyptus grandis HOM05D002376 ORTHO05D008821 3.6e-34 148.7 158 51.9
Eucgr.B04017 Eucalyptus grandis HOM05D002376 ORTHO05D008821 3.6e-34 148.7 158 51.9
Sopen11g027160 Solanum pennellii HOM05D002376 ORTHO05D008821 1.0e-33 147.1 128 58.6
Sabra13G0126300 Salix brachista HOM05D002376 ORTHO05D008821 1.4e-33 146.7 122 61.5
SalBow2G0685 Salvia bowleyana HOM05D002376 ORTHO05D008821 1.4e-33 146.7 130 56.9
LjContig00141g0012114 Lotus japonicus HOM05D002376 ORTHO05D008821 1.8e-33 146.4 123 61.0
PGSC0003DMG400026358 Solanum tuberosum HOM05D002376 ORTHO05D008821 1.8e-33 146.4 128 57.8
Rhsim13G0061900 Rhododendron simsii HOM05D002376 ORTHO05D008821 2.3e-33 146.0 164 52.4
Lsat_1_v5_gn_5_175460 Lactuca sativa HOM05D002376 ORTHO05D008821 5.2e-33 144.8 134 56.7
Lalb_Chr17g0345531 Lupinus albus HOM05D002376 ORTHO05D008821 5.2e-33 144.8 146 55.5
Oeu064671.1 Olea europaea HOM05D000883 ORTHO05D002942 5.2e-33 144.8 123 61.0
Phvul.008G249600 Phaseolus vulgaris HOM05D002376 ORTHO05D008821 5.2e-33 144.8 123 59.3
Solyc11g068450.2 Solanum lycopersicum HOM05D002376 ORTHO05D008821 5.2e-33 144.8 128 57.8
Glyma.02G234100 Glycine max HOM05D002376 ORTHO05D008821 6.8e-33 144.4 130 56.9
Os11g0112300 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 6.8e-33 144.4 122 60.7
THA.LOC104800780 Tarenaya hassleriana HOM05D002376 ORTHO05D008821 6.8e-33 144.4 149 53.7
HanXRQChr01g0012551 Helianthus annuus HOM05D002376 ORTHO05D008821 8.9e-33 144.1 127 59.1
Gorai.003G151600 Gossypium raimondii HOM05D002376 ORTHO05D008821 1.2e-32 143.7 144 55.6
ClCG02G019170 Citrullus lanatus HOM05D002376 ORTHO05D008821 1.5e-32 143.3 120 58.3
Potri.013G156700 Populus trichocarpa HOM05D002376 ORTHO05D008821 1.5e-32 143.3 122 59.0
MD03G1059100 Malus domestica HOM05D002376 ORTHO05D008821 2.0e-32 142.9 152 56.6
Nitab4.5_0000755g0130 Nicotiana tabacum HOM05D002376 ORTHO05D008821 2.0e-32 142.9 120 61.7
Migut.H01101 Erythranthe guttata HOM05D002376 ORTHO05D008821 2.6e-32 142.5 128 55.5
HPP92_009016 Vanilla planifolia HOM05D002376 ORTHO05D008821 2.6e-32 142.5 136 52.2
CsaV3_6G019000 Cucumis sativus L. HOM05D002376 ORTHO05D008821 4.4e-32 141.7 120 58.3
Gohir.D03G144300 Gossypium hirsutum HOM05D002376 ORTHO05D008821 4.4e-32 141.7 144 54.9
Sed0011436 Sechium edule HOM05D002376 ORTHO05D008821 4.4e-32 141.7 132 54.5
Peaxi162Scf00003g00413 Petunia axillaris HOM05D002376 ORTHO05D008821 5.8e-32 141.4 120 60.0
Ciclev10017044m.g Citrus clementina HOM05D002376 ORTHO05D008821 7.5e-32 141.0 132 53.8
MELO3C025682.2 Cucumis melo HOM05D002376 ORTHO05D008821 7.5e-32 141.0 120 57.5
Lalb_Chr10g0103701 Lupinus albus HOM05D002376 ORTHO05D008821 7.5e-32 141.0 146 51.4
TAR287G0002 Trochodendron aralioides HOM05D002376 ORTHO05D008821 1.3e-31 140.2 139 54.7
Gohir.A03G024200 Gossypium hirsutum HOM05D002376 ORTHO05D008821 2.2e-31 139.4 144 54.2
EL10Ac7g15863 Beta vulgaris HOM05D002376 ORTHO05D008821 2.9e-31 139.0 141 52.5
AUR62009722 Chenopodium quinoa HOM05D002376 ORTHO05D008821 2.9e-31 139.0 145 52.4
Nitab4.5_0009324g0020 Nicotiana tabacum HOM05D002376 ORTHO05D008821 2.9e-31 139.0 120 60.0
Atru.chr6.2418 Acer truncatum HOM05D002376 ORTHO05D008821 3.7e-31 138.7 120 56.7
Aqoxy4G02143 Aquilegia oxysepala HOM05D002376 ORTHO05D008821 3.7e-31 138.7 122 57.4
BcaB01g04113 Brassica carinata HOM05D002376 ORTHO05D008821 1.1e-30 137.1 120 55.0
BcaC01g05988 Brassica carinata HOM05D002376 ORTHO05D008821 1.1e-30 137.1 120 55.0
A03p16960 Brassica napus HOM05D002376 ORTHO05D004654 1.1e-30 137.1 120 55.0
C03p19980 Brassica napus HOM05D002376 ORTHO05D004654 1.1e-30 137.1 120 55.0
BolC3t14376H Brassica oleracea HOM05D002376 ORTHO05D004654 1.1e-30 137.1 120 55.0
Cc01_g09100 Coffea canephora HOM05D002376 ORTHO05D008821 1.1e-30 137.1 122 59.0
AUR62036225 Chenopodium quinoa HOM05D002376 ORTHO05D008821 1.4e-30 136.7 145 51.7
Psat2g052040 Pisum sativum HOM05D002376 ORTHO05D008821 1.4e-30 136.7 150 52.7
Carub.0004s1148 Capsella rubella HOM05D002376 ORTHO05D008821 2.4e-30 136.0 120 55.0
AT2G30330 Arabidopsis thaliana HOM05D002376 ORTHO05D008821 3.2e-30 135.6 120 55.0
CARHR123650 Cardamine hirsuta HOM05D002376 ORTHO05D008821 3.2e-30 135.6 120 55.8
Aa31LG5G6370 Aethionema arabicum HOM05D002376 ORTHO05D008821 4.1e-30 135.2 120 56.7
Sp4g12890 Schrenkiella parvula HOM05D002376 ORTHO05D008821 4.1e-30 135.2 120 54.2
Ah.15g096510 Amaranthus hybridus HOM05D002376 ORTHO05D008821 7.0e-30 134.4 120 56.7
SalBow2G2295 Salvia bowleyana HOM05D002376 ORTHO05D008821 7.0e-30 134.4 130 50.8
Thhalv10017367m.g Eutrema salsugineum HOM05D002376 ORTHO05D008821 9.2e-30 134.0 120 54.2
AL4G25190 Arabidopsis lyrata HOM05D002376 ORTHO05D008821 1.2e-29 133.7 120 54.2
Eucgr.L02725 Eucalyptus grandis HOM05D002376 ORTHO05D008821 1.6e-29 133.3 107 61.7
PSO170G0682 Papaver somniferum HOM05D002376 ORTHO05D008821 2.7e-29 132.5 129 51.9
Actinidia23182 Actinidia chinensis HOM05D002376 ORTHO05D008821 7.8e-29 131.0 111 61.3
Eucgr.B02271 Eucalyptus grandis HOM05D002376 ORTHO05D008821 7.8e-29 131.0 107 60.7
arahy.Tifrunner.gnm1.ann1.6WW78Y Arachis hypogaea HOM05D002376 ORTHO05D008821 1.0e-28 130.6 190 43.7
CDE06G1730 Ceratophyllum demersum HOM05D002376 ORTHO05D008821 3.0e-28 129.0 120 52.5
unitig_22.g5204 Utricularia gibba HOM05D006159 ORTHO05D007624 2.5e-27 125.9 121 52.9
MD03G1104100 Malus domestica HOM05D002376 ORTHO05D008821 4.3e-27 125.2 148 54.1
FAN21G3738 Fragaria x ananassa HOM05D002376 ORTHO05D008821 2.1e-26 122.9 121 57.0
ATR0586G003 Amborella trichopoda HOM05D002376 ORTHO05D008821 6.2e-26 121.3 119 51.3
Actinidia32596 Actinidia chinensis HOM05D002376 ORTHO05D008821 8.0e-26 120.9 100 64.0
CAN.G1358.8 Capsicum annuum HOM05D002376 ORTHO05D008821 1.1e-25 120.6 98 63.3
FAN16G0225 Fragaria x ananassa HOM05D002376 ORTHO05D008821 1.4e-25 120.2 121 56.2
FAN11G0211 Fragaria x ananassa HOM05D002376 ORTHO05D008821 8.9e-25 117.5 121 55.4
AagrBONN_evm.TU.Sc2ySwM_228.448 Anthoceros agrestis HOM05D002376 ORTHO05D008821 6.4e-23 111.3 118 47.5
MBI15_g06972_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 6.4e-23 111.3 167 41.3
Dinv12257 Davidia involucrata HOM05D002376 ORTHO05D008821 3.2e-22 109.0 123 55.3
COL.COLO4_11185 Corchorus olitorius HOM05D002376 ORTHO05D008821 7.0e-22 107.8 121 53.7
Mapoly0069s0031 Marchantia polymorpha HOM05D002376 ORTHO05D008821 7.0e-22 107.8 120 45.8
Cpa.g.sc2.331 Carica papaya HOM05D002376 ORTHO05D008821 9.2e-22 107.5 101 54.5
Pp3c20_8500 Physcomitrium patens HOM05D002376 ORTHO05D008821 1.2e-21 107.1 117 44.4
PSO017G2121 Papaver somniferum HOM05D002376 ORTHO05D008821 2.3e-20 102.8 113 47.8
CSS0017661 Camellia sinensis var. sinensis HOM05D002376 ORTHO05D008821 4.3e-19 98.6 92 52.2
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 5.6e-19 98.2 95 55.8
Nn4g26021 Nelumbo nucifera HOM05D002376 ORTHO05D008821 1.2e-18 97.1 93 53.8
SGA_v2.0_scaffold77G25373 Striga asiatica HOM05D002376 ORTHO05D008821 2.8e-18 95.9 92 52.2
Ca_05691_v3 Cicer arietinum L. HOM05D002376 ORTHO05D008821 6.2e-18 94.7 117 47.0
Sc06g0008070 Simmondsia chinensis HOM05D002376 ORTHO05D008821 1.1e-17 94.0 104 50.0
Hund18966 Selenicereus undatus HOM05D002376 ORTHO05D008821 6.8e-17 91.3 96 51.0
Os12g0416500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 2.0e-16 89.7 88 55.7
CBR_g4891 Chara braunii HOM05D006348 ORTHO05D008261 3.2e-14 82.4 110 32.7
SMO361G0428 Selaginella moellendorffii HOM05D002376 ORTHO05D008821 1.2e-13 80.5 102 41.2
Zm00001eb276260 Zea mays HOM05D002376 ORTHO05D008821 4.6e-13 78.6 77 53.2
MBI15_g36803_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 1.3e-12 77.0 100 46.0
SHI19244 Sapria himalayana HOM05D002376 ORTHO05D008821 1.7e-12 76.6 90 47.8
Os12g0111900 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D008821 8.1e-10 67.8 92 41.3
MBI07_g35969_MAGBIO Magnolia biondii HOM05D002376 ORTHO05D008821 1.4e-09 67.0 69 47.8
ECA248G3831 Erigeron canadensis HOM05D002376 ORTHO05D008821 1.1e-06 57.4 65 52.3


User provided reference genes

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