Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 6.3e-131 470.7 226 100.0
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 4.3e-103 378.3 226 81.0
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 1.7e-99 366.3 226 78.8
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.7e-97 359.0 224 76.3
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 6.0e-97 357.8 224 75.9
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.3e-96 356.7 224 76.3
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 5.1e-96 354.8 227 75.8
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 6.6e-96 354.4 224 75.9
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.5e-95 353.2 224 75.0
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 7.1e-90 334.3 229 71.6
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 1.5e-87 326.6 229 70.3
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 3.1e-85 318.9 226 69.5
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 3.4e-84 315.5 225 66.7
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 7.8e-81 304.3 229 65.9
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 2.3e-80 302.8 229 65.5
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 2.3e-80 302.8 231 67.1
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 3.9e-80 302.0 229 66.4
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 5.1e-80 301.6 225 65.3
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 5.1e-80 301.6 227 65.6
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 1.1e-79 300.4 225 66.2
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.5e-79 300.1 230 64.8
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.9e-79 299.7 225 66.2
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 1.9e-79 299.7 225 66.2
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 3.3e-79 298.9 229 65.9
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 4.3e-79 298.5 225 65.8
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 9.6e-79 297.4 225 64.9
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 2.1e-78 296.2 229 65.1
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 2.8e-78 295.8 225 65.8
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 3.6e-78 295.4 225 65.3
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 8.1e-78 294.3 231 64.1
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 8.1e-78 294.3 226 65.5
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 6.9e-77 291.2 229 64.6
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 2.0e-76 289.7 225 64.0
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 5.8e-76 288.1 223 63.7
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.8e-76 288.1 231 63.6
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 9.9e-76 287.3 225 62.7
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 9.9e-76 287.3 229 65.5
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 2.2e-75 286.2 225 64.0
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 4.9e-75 285.0 229 62.9
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 6.4e-75 284.6 229 63.8
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 6.4e-75 284.6 223 63.2
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 1.9e-74 283.1 229 62.9
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 1.9e-74 283.1 226 62.4
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 3.2e-74 282.3 223 64.1
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 7.1e-74 281.2 225 62.7
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 9.3e-74 280.8 219 61.6
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 1.2e-73 280.4 225 62.2
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 2.7e-73 279.3 219 63.0
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 4.6e-73 278.5 219 62.6
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 7.9e-73 277.7 228 60.5
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 7.9e-73 277.7 226 63.7
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 1.7e-72 276.6 226 61.9
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.5e-71 273.5 225 60.0
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.9e-71 273.1 229 59.8
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 2.5e-71 272.7 230 60.9
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 2.5e-71 272.7 225 60.4
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 3.3e-71 272.3 229 60.3
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 1.3e-70 270.4 228 57.5
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 1.6e-70 270.0 226 60.6
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 2.8e-70 269.2 226 61.1
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.6e-70 268.9 230 59.6
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 4.8e-70 268.5 230 58.3
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 4.0e-69 265.4 223 59.6
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 4.5e-68 261.9 230 59.6
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 2.4e-66 256.1 207 61.8
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 3.2e-66 255.8 227 56.8
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 9.3e-66 254.2 223 57.8
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 2.7e-65 252.7 227 55.9
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 4.6e-65 251.9 225 56.9
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 6.0e-65 251.5 191 64.4
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.0e-64 250.8 200 63.0
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 1.0e-64 250.8 224 58.0
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 1.9e-63 246.5 203 59.1
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 2.5e-63 246.1 230 55.2
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 9.6e-63 244.2 225 54.2
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 1.3e-62 243.8 228 52.6
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 1.3e-62 243.8 225 53.8
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 2.1e-62 243.0 228 53.9
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 3.7e-62 242.3 228 52.6
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 4.8e-62 241.9 222 55.0
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 2.4e-61 239.6 228 51.8
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 3.1e-61 239.2 228 51.8
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 9.0e-61 237.7 225 52.4
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 9.0e-61 237.7 225 54.2
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 2.0e-60 236.5 225 53.3
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 3.4e-60 235.7 225 52.9
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 4.5e-60 235.3 230 52.6
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 5.8e-60 235.0 228 51.8
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 7.6e-60 234.6 229 54.1
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 2.2e-59 233.0 225 51.6
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 1.1e-58 230.7 221 54.8
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.4e-58 230.3 225 53.8
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 4.6e-57 225.3 222 53.2
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 4.6e-57 225.3 230 54.3
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 4.3e-55 218.8 228 50.9
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 5.7e-55 218.4 225 51.1
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 1.3e-54 217.2 246 45.9
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 3.7e-54 215.7 224 52.2
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 9.0e-53 211.1 236 47.0
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.7e-51 206.8 236 47.0
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 2.5e-50 203.0 216 50.5
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 7.9e-49 198.0 259 40.9
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.1e-48 195.3 247 43.3
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.7e-47 191.8 248 43.5
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.7e-47 191.8 242 44.2
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 6.3e-46 188.3 145 64.8
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.2e-44 184.1 225 48.0
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.2e-44 184.1 226 44.2
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.5e-44 183.7 225 45.8
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 2.0e-44 183.3 223 44.4
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 2.6e-44 183.0 237 41.4
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 4.5e-44 182.2 226 43.8
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 7.7e-44 181.4 228 43.4
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.3e-43 180.6 224 42.9
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 1.7e-43 180.3 239 42.7
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 7.2e-42 174.9 226 38.9
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 3.6e-41 172.6 260 36.5
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.0e-40 171.0 230 39.6
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.8e-40 170.2 229 39.3
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 8.8e-40 167.9 150 55.3
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 2.0e-39 166.8 228 39.9
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 3.3e-39 166.0 258 38.0
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 4.3e-39 165.6 259 37.1
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.3e-38 164.1 259 38.2
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 2.2e-38 163.3 225 41.3
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.8e-35 152.5 231 44.2
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.0e-35 152.1 231 44.2
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 2.5e-34 149.8 186 41.4
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 4.2e-34 149.1 174 43.7
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 4.2e-34 149.1 174 43.7
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 5.5e-34 148.7 214 39.7
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 2.7e-33 146.4 234 36.3
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.8e-32 143.7 249 36.9
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 1.8e-32 143.7 241 37.8
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 1.1e-31 141.0 145 46.9
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.5e-31 140.6 320 31.6
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 2.6e-31 139.8 146 45.9
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 4.4e-31 139.0 153 43.1
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 4.4e-31 139.0 207 38.2
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 4.4e-31 139.0 229 35.4
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 4.4e-31 139.0 179 43.6
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 9.7e-31 137.9 310 30.6
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 4.8e-30 135.6 353 28.3
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.1e-29 132.9 268 32.1
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 5.3e-29 132.1 217 33.6
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 4.5e-28 129.0 187 38.0
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 3.2e-26 122.9 146 44.5
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 1.6e-25 120.6 114 50.9
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 2.1e-25 120.2 129 52.7
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 7.5e-23 111.7 230 30.4
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 9.7e-23 111.3 142 40.1
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 2.2e-22 110.2 109 52.3
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 9.1e-21 104.8 161 38.5
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 2.0e-20 103.6 141 40.4
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 4.5e-20 102.4 140 39.3
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.2e-17 94.4 75 57.3
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.6e-17 94.0 178 31.5
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.7e-17 92.4 216 34.3
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 2.3e-16 90.1 115 38.3
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 7.5e-15 85.1 152 35.5
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.1e-13 81.3 100 40.0
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 3.5e-12 76.3 193 29.0
AUR62002202 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.5e-12 75.9 163 31.9
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 5.0e-11 72.4 71 45.1


User provided reference genes

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