Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 1.1e-104 383.3 184 100.0
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 2.9e-94 348.6 183 89.6
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 1.2e-90 336.7 184 85.3
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 2.2e-89 332.4 184 83.7
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 2.4e-88 328.9 184 83.2
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.0e-86 323.6 184 82.1
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 1.5e-85 319.7 184 81.0
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 2.8e-84 315.5 184 79.9
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 1.4e-83 313.2 185 78.9
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 5.8e-82 307.8 182 79.1
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 2.2e-81 305.8 183 76.5
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 3.7e-81 305.1 186 77.4
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 3.7e-81 305.1 179 78.8
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 3.7e-81 305.1 182 75.3
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 6.4e-81 304.3 179 78.2
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 1.9e-80 302.8 183 75.4
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 2.4e-80 302.4 185 77.3
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 1.0e-78 297.0 184 73.4
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 1.7e-78 296.2 184 73.9
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 1.7e-78 296.2 181 75.1
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 2.3e-78 295.8 183 72.1
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 3.0e-78 295.4 178 74.2
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 5.1e-78 294.7 183 74.9
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 8.6e-78 293.9 178 74.7
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 1.5e-77 293.1 181 73.5
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 2.5e-77 292.4 177 74.0
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 2.5e-77 292.4 183 72.1
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 4.3e-77 291.6 178 75.3
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 4.3e-77 291.6 184 72.3
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.6e-76 289.7 177 75.1
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 1.6e-76 289.7 177 75.1
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 3.6e-76 288.5 177 74.0
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 4.7e-76 288.1 178 74.2
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 2.3e-75 285.8 185 70.8
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 5.2e-75 284.6 184 73.9
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 6.8e-75 284.3 181 72.4
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 1.5e-74 283.1 173 74.6
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 1.5e-74 283.1 171 76.0
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 2.0e-74 282.7 176 71.0
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 2.6e-74 282.3 176 71.6
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 3.4e-74 282.0 178 69.7
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 3.4e-74 282.0 178 70.8
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 4.4e-74 281.6 177 71.2
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 4.4e-74 281.6 178 71.3
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 4.4e-74 281.6 181 70.7
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 9.9e-74 280.4 155 84.5
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 2.2e-73 279.3 181 70.7
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 2.9e-73 278.9 178 71.9
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 2.9e-73 278.9 178 70.8
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 1.1e-72 276.9 180 73.3
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 1.1e-72 276.9 181 70.7
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 1.9e-72 276.2 173 71.7
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 2.4e-72 275.8 176 70.5
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 3.2e-72 275.4 151 84.1
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 3.2e-72 275.4 183 68.3
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 4.1e-72 275.0 182 67.0
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 4.1e-72 275.0 181 70.2
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 7.1e-72 274.2 173 69.9
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 7.1e-72 274.2 178 70.8
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 7.1e-72 274.2 178 70.2
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 1.2e-71 273.5 181 69.1
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.2e-71 273.5 176 73.3
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 1.6e-71 273.1 183 66.7
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 2.1e-71 272.7 183 66.7
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 1.3e-70 270.0 174 71.3
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 3.0e-70 268.9 174 68.4
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 6.6e-70 267.7 175 69.1
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 1.1e-69 266.9 173 71.7
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 1.1e-69 266.9 185 68.1
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 1.1e-69 266.9 174 71.3
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 1.5e-69 266.5 175 70.9
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 1.5e-69 266.5 185 67.6
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 3.3e-69 265.4 177 69.5
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 4.3e-69 265.0 174 70.1
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 5.6e-69 264.6 175 66.9
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 7.3e-69 264.2 177 69.5
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 1.2e-68 263.5 176 68.2
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 3.6e-68 261.9 175 68.0
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 4.7e-68 261.5 182 65.4
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 3.1e-67 258.8 178 66.9
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 5.2e-67 258.1 180 67.8
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 6.8e-67 257.7 166 69.9
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 2.6e-66 255.8 155 73.5
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 5.8e-66 254.6 177 67.8
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 7.6e-66 254.2 163 70.6
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 3.2e-64 248.8 163 70.6
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 3.2e-64 248.8 163 70.6
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 9.3e-64 247.3 173 66.5
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 1.7e-62 243.0 177 61.0
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 2.3e-62 242.7 173 63.6
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 2.3e-62 242.7 173 63.6
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 1.1e-61 240.4 171 64.3
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 1.5e-61 240.0 156 68.6
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 1.9e-61 239.6 171 64.9
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 1.9e-61 239.6 175 59.4
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 1.3e-60 236.9 174 62.1
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 3.6e-60 235.3 181 60.2
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.8e-59 233.0 149 69.1
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 4.0e-59 231.9 160 66.9
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 4.0e-59 231.9 152 71.7
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 6.9e-59 231.1 164 65.2
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 6.9e-59 231.1 172 64.0
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 7.3e-53 211.1 165 57.6
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 1.4e-51 206.8 154 60.4
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 2.7e-47 192.6 186 49.5
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 1.8e-46 189.9 175 49.1
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 2.3e-46 189.5 129 65.1
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 3.9e-46 188.7 177 49.2
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 3.1e-43 179.1 177 48.0
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 1.2e-42 177.2 128 63.3
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 3.2e-40 169.1 136 58.8
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 2.4e-35 152.9 178 42.7
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 5.1e-30 135.2 127 53.5
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 1.4e-24 117.1 151 42.4
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 7.9e-23 111.3 70 74.3
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 1.3e-20 104.0 173 34.7
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 8.2e-20 101.3 185 37.3
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 2.7e-15 86.3 58 60.3
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 2.3e-14 83.2 95 46.3
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 5.0e-09 65.5 173 30.1
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 8.5e-09 64.7 173 30.1
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 1.1e-08 64.3 173 30.1
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 2.5e-08 63.2 188 29.8
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 4.2e-08 62.4 187 28.9
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 4.2e-08 62.4 179 27.9
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 5.5e-08 62.0 187 28.9
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 7.2e-08 61.6 178 28.7
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 9.4e-08 61.2 182 29.1
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 9.4e-08 61.2 187 28.9
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 9.4e-08 61.2 184 29.3
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 9.4e-08 61.2 177 29.9
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 1.2e-07 60.8 178 28.7
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 1.6e-07 60.5 177 30.5
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 1.6e-07 60.5 179 29.1
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 1.6e-07 60.5 182 28.6
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 1.6e-07 60.5 178 29.2
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 2.1e-07 60.1 177 30.5
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 2.1e-07 60.1 179 30.2
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 2.1e-07 60.1 179 30.2
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 2.1e-07 60.1 179 30.2
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 2.1e-07 60.1 183 28.4
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 2.7e-07 59.7 181 28.2
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 2.7e-07 59.7 181 28.2
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 2.7e-07 59.7 181 28.2
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 2.7e-07 59.7 178 28.7
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 3.6e-07 59.3 178 27.5
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 4.7e-07 58.9 181 28.2
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 4.7e-07 58.9 181 28.2
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 4.7e-07 58.9 187 28.3
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 6.1e-07 58.5 189 27.0
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 6.1e-07 58.5 178 28.7
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 8.0e-07 58.2 178 27.5
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 8.0e-07 58.2 177 27.7
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 8.0e-07 58.2 181 28.2
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 8.0e-07 58.2 176 26.7
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.0e-06 57.8 191 28.3
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 1.4e-06 57.4 177 28.2
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 1.4e-06 57.4 176 28.4
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 1.4e-06 57.4 189 27.0
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 1.4e-06 57.4 180 27.8
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 1.8e-06 57.0 176 27.8
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 1.8e-06 57.0 176 27.8
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 1.8e-06 57.0 176 27.8
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 1.8e-06 57.0 179 26.8
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 1.8e-06 57.0 178 27.5
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 2.3e-06 56.6 181 28.2
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 2.3e-06 56.6 182 28.6
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 2.3e-06 56.6 157 31.2
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 2.3e-06 56.6 188 26.1
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 2.3e-06 56.6 179 27.9
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.3e-06 56.6 190 27.9
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 3.0e-06 56.2 189 26.5
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 3.0e-06 56.2 189 25.9
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 4.0e-06 55.8 175 26.9
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 4.0e-06 55.8 179 30.2
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 5.2e-06 55.5 181 27.1
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 5.2e-06 55.5 195 27.7
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 6.7e-06 55.1 182 27.5
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 6.7e-06 55.1 173 28.3
BolC4t23645H Brassica oleracea HOM05D000003 ORTHO05D001498 8.8e-06 54.7 67 43.3
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 8.8e-06 54.7 179 25.1


User provided reference genes

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