Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G053100 Prunus persica HOM05D005995 ORTHO05D007362 1.1e-77 293.5 181 100.0
MD11G1066600 Malus domestica HOM05D005995 ORTHO05D007362 2.3e-67 259.2 182 90.1
MD03G1063100 Malus domestica HOM05D005995 ORTHO05D007362 1.1e-66 256.9 182 80.8
FvH4_3g39150 Fragaria vesca HOM05D005995 ORTHO05D007362 7.4e-66 254.2 179 79.9
Manes.17G003200 Manihot esculenta HOM05D005995 ORTHO05D007362 2.2e-65 252.7 181 80.7
RcHm_v2.0_Chr5g0070551 Rosa chinensis HOM05D005995 ORTHO05D007362 2.2e-65 252.7 179 79.3
FAN11G1452 Fragaria x ananassa HOM05D005995 ORTHO05D007362 4.8e-65 251.5 179 79.3
GSVIVG01024692001 Vitis vinifera HOM05D005995 ORTHO05D007362 4.8e-65 251.5 181 77.3
Haze_24375 Corylus avellana HOM05D005995 ORTHO05D007362 8.2e-65 250.8 181 77.3
FAN21G0787 Fragaria x ananassa HOM05D005995 ORTHO05D007362 8.2e-65 250.8 179 73.2
FAN25G2223 Fragaria x ananassa HOM05D005995 ORTHO05D007362 8.2e-65 250.8 179 74.3
QL01p039263 Quercus lobata HOM05D005995 ORTHO05D007362 8.2e-65 250.8 180 72.8
Thecc.09G353200 Theobroma cacao HOM05D005995 ORTHO05D007362 2.6e-63 245.7 181 71.8
FAN16G3099 Fragaria x ananassa HOM05D005995 ORTHO05D007362 5.9e-63 244.6 179 72.6
Cfa011735 Carpinus fangiana HOM05D005995 ORTHO05D007362 1.7e-62 243.0 181 76.8
CSS0037016 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 4.2e-61 238.4 181 69.1
CSS0047754 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 4.2e-61 238.4 181 69.1
Potri.009G074400 Populus trichocarpa HOM05D005995 ORTHO05D007362 4.2e-61 238.4 181 73.5
CiPaw.14G056700 Carya illinoinensis HOM05D005995 ORTHO05D007362 2.1e-60 236.1 181 69.6
Duzib170G0863 Durio zibethinus HOM05D005995 ORTHO05D007362 2.1e-60 236.1 182 69.8
TAR131G0002 Trochodendron aralioides HOM05D005995 ORTHO05D007362 6.1e-60 234.6 179 68.2
Potri.001G279700 Populus trichocarpa HOM05D005995 ORTHO05D007362 8.0e-60 234.2 181 69.1
Dinv09649 Davidia involucrata HOM05D002227 ORTHO05D002337 1.8e-59 233.0 138 85.5
Ciclev10029374m.g Citrus clementina HOM05D005995 ORTHO05D007362 2.3e-59 232.6 180 68.9
Actinidia23218 Actinidia chinensis HOM05D005995 ORTHO05D007362 4.0e-59 231.9 138 85.5
AUR62023851 Chenopodium quinoa HOM05D005995 ORTHO05D007362 4.0e-59 231.9 181 66.9
Cc01_g14560 Coffea canephora HOM05D005995 ORTHO05D007362 5.2e-59 231.5 181 66.9
TAR623G0738 Trochodendron aralioides HOM05D005995 ORTHO05D007362 5.2e-59 231.5 179 67.0
COL.COLO4_11080 Corchorus olitorius HOM05D005995 ORTHO05D007362 8.8e-59 230.7 179 69.8
Rhsim13G0066700 Rhododendron simsii HOM05D005995 ORTHO05D007362 8.8e-59 230.7 164 77.4
CiPaw.13G073700 Carya illinoinensis HOM05D005995 ORTHO05D007362 2.6e-58 229.2 170 70.0
Cpa.g.sc2.418 Carica papaya HOM05D005995 ORTHO05D007362 3.3e-58 228.8 178 68.0
Glyma.11G168600 Glycine max HOM05D005995 ORTHO05D007362 7.5e-58 227.6 182 69.8
Actinidia02782 Actinidia chinensis HOM05D005995 ORTHO05D007362 1.3e-57 226.9 136 84.6
Duzib168G2258 Durio zibethinus HOM05D005995 ORTHO05D007362 1.7e-57 226.5 181 67.4
Nn2g14523 Nelumbo nucifera HOM05D005995 ORTHO05D007362 1.7e-57 226.5 179 65.9
VMungo0540G0986 Vigna mungo HOM05D005995 ORTHO05D007362 3.7e-57 225.3 180 66.7
CANSAT54G2854 Cannabis sativa HOM05D005995 ORTHO05D007362 4.8e-57 224.9 178 75.8
Sabra09G0056500 Salix brachista HOM05D005995 ORTHO05D007362 4.8e-57 224.9 181 67.4
Gohir.A13G233500 Gossypium hirsutum HOM05D005995 ORTHO05D007362 6.3e-57 224.6 138 81.9
arahy.Tifrunner.gnm1.ann1.SCP5PP Arachis hypogaea HOM05D005995 ORTHO05D007362 1.4e-56 223.4 184 65.2
vmacro02942 Vaccinium macrocarpon HOM05D005995 ORTHO05D007362 1.4e-56 223.4 166 72.9
EL10Ac3g05994 Beta vulgaris HOM05D005995 ORTHO05D007362 1.8e-56 223.0 179 64.8
Phvul.006G070800 Phaseolus vulgaris HOM05D005995 ORTHO05D007362 2.4e-56 222.6 180 66.1
CAN.G1095.10 Capsicum annuum HOM05D005995 ORTHO05D007362 3.1e-56 222.2 179 65.4
Lalb_Chr18g0051191 Lupinus albus HOM05D005995 ORTHO05D007362 4.1e-56 221.9 181 75.1
Ca_14969_v3 Cicer arietinum L. HOM05D005995 ORTHO05D007362 7.0e-56 221.1 177 66.7
Nitab4.5_0013485g0010 Nicotiana tabacum HOM05D005995 ORTHO05D007362 7.0e-56 221.1 179 65.9
Sopen06g033540 Solanum pennellii HOM05D005995 ORTHO05D007362 7.0e-56 221.1 179 65.4
PGSC0003DMG400030447 Solanum tuberosum HOM05D005995 ORTHO05D007362 7.0e-56 221.1 179 65.4
Eucgr.B02232 Eucalyptus grandis HOM05D005995 ORTHO05D007362 9.1e-56 220.7 138 79.7
Oeu031050.1 Olea europaea HOM05D005995 ORTHO05D007362 3.5e-55 218.8 181 65.7
Sabra16G0173300 Salix brachista HOM05D005995 ORTHO05D007362 4.5e-55 218.4 210 66.2
TAR633G2447 Trochodendron aralioides HOM05D005995 ORTHO05D007362 4.5e-55 218.4 181 65.7
Solyc06g082160.4 Solanum lycopersicum HOM05D005995 ORTHO05D007362 1.0e-54 217.2 179 64.2
Lalb_Chr20g0114841 Lupinus albus HOM05D005995 ORTHO05D007362 1.3e-54 216.9 182 68.1
Hund06617 Selenicereus undatus HOM05D005995 ORTHO05D007362 2.2e-54 216.1 179 63.1
Aqoxy4G02443 Aquilegia oxysepala HOM05D005995 ORTHO05D007362 2.9e-54 215.7 138 76.8
MELO3C020526.2 Cucumis melo HOM05D005995 ORTHO05D007362 5.0e-54 214.9 181 62.4
CsaV3_1G036430 Cucumis sativus L. HOM05D005995 ORTHO05D007362 6.5e-54 214.5 181 61.9
ECA248G1932 Erigeron canadensis HOM05D005995 ORTHO05D007362 8.5e-54 214.2 135 80.7
ClCG03G000500 Citrullus lanatus HOM05D005995 ORTHO05D007362 1.1e-53 213.8 181 61.9
TPR.G32896 Trifolium pratense HOM05D005995 ORTHO05D007362 1.5e-53 213.4 177 66.1
PSO170G4292 Papaver somniferum HOM05D005995 ORTHO05D007362 2.5e-53 212.6 138 77.5
DCAR_015647 Daucus carota HOM05D005995 ORTHO05D007362 3.2e-53 212.2 178 63.5
Medtr3g465040 Medicago truncatula HOM05D005995 ORTHO05D007362 7.2e-53 211.1 138 75.4
PSO017G3188 Papaver somniferum HOM05D005995 ORTHO05D007362 9.4e-53 210.7 134 77.6
PGR031G2980 Punica granatum HOM05D005995 ORTHO05D007362 1.2e-52 210.3 181 60.2
arahy.Tifrunner.gnm1.ann1.6174C5 Arachis hypogaea HOM05D005995 ORTHO05D007362 2.1e-52 209.5 180 67.8
MSTRG.10034 Avicennia marina HOM05D005995 ORTHO05D007362 2.1e-52 209.5 176 62.5
Psat0s2070g0120 Pisum sativum HOM05D005995 ORTHO05D007362 3.6e-52 208.8 135 75.6
ATR0681G053 Amborella trichopoda HOM05D005995 ORTHO05D007362 4.7e-52 208.4 139 74.1
Lj6g0019722 Lotus japonicus HOM05D005995 ORTHO05D007362 4.7e-52 208.4 123 82.1
Gohir.D13G239100 Gossypium hirsutum HOM05D005995 ORTHO05D007362 6.1e-52 208.0 138 77.5
Gorai.013G270000 Gossypium raimondii HOM05D005995 ORTHO05D007362 6.1e-52 208.0 138 77.5
Glyma.18G060000 Glycine max HOM05D005995 ORTHO05D007362 8.0e-52 207.6 174 64.4
HanXRQChr11g0334701 Helianthus annuus HOM05D005995 ORTHO05D007362 1.0e-51 207.2 135 77.0
Sc06g0010410 Simmondsia chinensis HOM05D005995 ORTHO05D007362 8.8e-51 204.1 135 76.3
MBI03_g03955_MAGBIO Magnolia biondii HOM05D005995 ORTHO05D007362 1.2e-50 203.8 181 72.4
Sp6g20270 Schrenkiella parvula HOM05D005995 ORTHO05D007362 1.2e-50 203.8 174 61.5
SGA_v2.0_scaffold371G50155 Striga asiatica HOM05D005995 ORTHO05D007362 1.5e-50 203.4 161 62.7
Peaxi162Scf00540g00015 Petunia axillaris HOM05D005995 ORTHO05D007362 2.0e-50 203.0 179 62.0
Carub.0008s1918 Capsella rubella HOM05D005995 ORTHO05D007362 3.4e-50 202.2 170 60.0
Lsat_1_v5_gn_5_173181 Lactuca sativa HOM05D005995 ORTHO05D007362 5.7e-50 201.4 126 79.4
Sed0015986 Sechium edule HOM05D005995 ORTHO05D007362 5.7e-50 201.4 180 58.9
AL8G34810 Arabidopsis lyrata HOM05D005995 ORTHO05D007362 1.3e-49 200.3 170 60.0
MD11G1066800 Malus domestica HOM05D005995 ORTHO05D007362 1.3e-49 200.3 160 67.5
AT5G58575 Arabidopsis thaliana HOM05D005995 ORTHO05D007362 4.8e-49 198.4 170 60.0
Migut.N00147 Erythranthe guttata HOM05D005995 ORTHO05D007362 4.8e-49 198.4 179 60.3
Thhalv10014805m.g Eutrema salsugineum HOM05D005995 ORTHO05D007362 1.4e-48 196.8 138 73.2
Nitab4.5_0002043g0030 Nicotiana tabacum HOM05D005995 ORTHO05D007362 1.8e-48 196.4 183 59.0
Atru.chr3.4142 Acer truncatum HOM05D005995 ORTHO05D007362 2.4e-48 196.1 238 54.2
CARHR272410 Cardamine hirsuta HOM05D005995 ORTHO05D007362 3.1e-48 195.7 169 59.8
MD11G1152800 Malus domestica HOM05D005995 ORTHO05D007362 3.1e-48 195.7 114 86.0
THA.LOC104799390 Tarenaya hassleriana HOM05D005995 ORTHO05D007362 2.0e-47 193.0 140 72.1
BcaC01g06637 Brassica carinata HOM05D005995 ORTHO05D007362 4.5e-47 191.8 136 69.9
A03p12120 Brassica napus HOM05D005995 ORTHO05D007362 4.5e-47 191.8 136 69.9
CDE10G1344 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 4.5e-47 191.8 167 58.7
HPP92_012020 Vanilla planifolia HOM05D005995 ORTHO05D007362 4.5e-47 191.8 128 75.8
BcaB01g04505 Brassica carinata HOM05D005995 ORTHO05D007362 5.9e-47 191.4 136 69.9
BraA03t10524Z Brassica rapa HOM05D005995 ORTHO05D007362 5.9e-47 191.4 136 69.9
BolC3t13867H Brassica oleracea HOM05D005995 ORTHO05D007362 1.7e-46 189.9 136 69.1
Lj1P130T21 Lonicera japonica HOM05D005995 ORTHO05D007362 1.1e-45 187.2 107 84.1
Aa31LG11G350 Aethionema arabicum HOM05D005995 ORTHO05D007362 1.9e-45 186.4 127 74.0
unitig_62.g23487 Utricularia gibba HOM05D005995 ORTHO05D007362 2.5e-45 186.0 181 56.4
BcaNung06849 Brassica carinata HOM05D002227 ORTHO05D007362 1.0e-43 180.6 137 67.2
CDE10G0962 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 7.5e-42 174.5 165 55.8
TWI79G0924 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 2.9e-38 162.5 184 52.2
TWI31G1135 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 8.6e-38 161.0 139 61.9
SEGI_16655 Sequoiadendron giganteum HOM05D005995 ORTHO05D007362 1.9e-37 159.8 120 63.3
Mapoly0008s0254 Marchantia polymorpha HOM05D005995 ORTHO05D007362 4.7e-36 155.2 136 60.3
Sed0014404 Sechium edule HOM05D005995 ORTHO05D007362 1.5e-34 150.2 164 52.4
AUR62002337 Chenopodium quinoa HOM05D005995 ORTHO05D007362 1.3e-33 147.1 125 59.2
Gohir.A05G107700 Gossypium hirsutum HOM05D005995 ORTHO05D007362 1.4e-32 143.7 181 49.2
Pp3c7_14690 Physcomitrium patens HOM05D005995 ORTHO05D007362 2.7e-31 139.4 122 58.2
Zm00001eb286290 Zea mays HOM05D005995 ORTHO05D007362 3.5e-31 139.0 145 53.1
Os05g0351500 Oryza sativa ssp. japonica HOM05D005995 ORTHO05D007362 1.7e-30 136.7 139 55.4
C03p14210 Brassica napus HOM05D005995 ORTHO05D007362 5.0e-30 135.2 118 58.5
Gohir.D05G107900 Gossypium hirsutum HOM05D005995 ORTHO05D007362 6.2e-28 128.3 181 46.4
MD11G1153100 Malus domestica HOM05D005995 ORTHO05D007362 4.4e-26 122.1 80 78.8
Pp3c11_11530 Physcomitrium patens HOM05D001687 ORTHO05D001608 2.2e-25 119.8 110 54.5
SMO358G0374 Selaginella moellendorffii HOM05D005995 ORTHO05D007362 6.4e-25 118.2 99 59.6
BcaC01g06639 Brassica carinata HOM05D005995 ORTHO05D007362 8.3e-25 117.9 123 53.7
Gorai.009G112000 Gossypium raimondii HOM05D005995 ORTHO05D007362 8.3e-25 117.9 125 55.2
AagrBONN_evm.TU.Sc2ySwM_344.2127 Anthoceros agrestis HOM05D005995 ORTHO05D007362 3.2e-24 115.9 103 56.3
Actinidia32626 Actinidia chinensis HOM05D005995 ORTHO05D007362 3.0e-22 109.4 74 79.7
HPP92_013780 Vanilla planifolia HOM05D005995 ORTHO05D007362 3.6e-20 102.4 85 61.2
CBR_g49952 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-18 95.9 138 42.0
MD11G1071300 Malus domestica HOM05D005995 ORTHO05D007362 2.3e-14 83.2 83 67.5
Cre17.g719550 Chlamydomonas reinhardtii HOM05D005995 ORTHO05D007362 2.4e-11 73.2 54 57.4
MD11G1071400 Malus domestica HOM05D005995 ORTHO05D007362 1.7e-09 67.0 43 83.7
Pp3c4_14820 Physcomitrium patens HOM05D005995 ORTHO05D311899 2.2e-09 66.6 120 40.0
Medtr6g460490 Medicago truncatula HOM05D005995 ORTHO05D007362 2.1e-07 60.1 35 74.3
MCO04G081 Micromonas commoda HOM05D005995 ORTHO05D007362 6.6e-06 55.1 121 33.9


User provided reference genes

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