Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G048500 Prunus persica HOM05D005631 ORTHO05D006765 1.6e-89 332.8 173 100.0
MD03G1056300 Malus domestica HOM05D005631 ORTHO05D006765 2.1e-81 305.8 173 93.1
RcHm_v2.0_Chr5g0071621 Rosa chinensis HOM05D005631 ORTHO05D006765 7.3e-79 297.4 173 89.6
ClCG02G019260 Citrullus lanatus HOM05D005631 ORTHO05D006765 6.2e-78 294.3 173 86.1
FAN11G1428 Fragaria x ananassa HOM05D005631 ORTHO05D006765 6.2e-78 294.3 173 89.0
FAN16G0042 Fragaria x ananassa HOM05D005631 ORTHO05D006765 6.2e-78 294.3 173 89.0
MD11G1057500 Malus domestica HOM05D005631 ORTHO05D006765 6.2e-78 294.3 173 90.8
FvH4_3g39740 Fragaria vesca HOM05D005631 ORTHO05D006765 1.8e-77 292.7 173 88.4
FAN21G1424 Fragaria x ananassa HOM05D005631 ORTHO05D006765 3.1e-77 292.0 173 88.4
Cfa011776 Carpinus fangiana HOM05D005631 ORTHO05D006765 9.0e-77 290.4 174 86.2
CANSAT54G1076 Cannabis sativa HOM05D005631 ORTHO05D006765 2.0e-76 289.3 173 85.5
CsaV3_6G015890 Cucumis sativus L. HOM05D005631 ORTHO05D006765 7.6e-76 287.3 173 85.5
MELO3C025697.2 Cucumis melo HOM05D005631 ORTHO05D006765 1.7e-75 286.2 173 85.0
Lalb_Chr15g0083281 Lupinus albus HOM05D005631 ORTHO05D006765 6.4e-75 284.3 174 84.5
Ca_15010_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 1.1e-74 283.5 174 84.5
Glyma.18G057300 Glycine max HOM05D005631 ORTHO05D006765 1.1e-74 283.5 174 83.9
Medtr3g465690 Medicago truncatula HOM05D005631 ORTHO05D006765 2.4e-74 282.3 174 83.9
Sed0015217 Sechium edule HOM05D005631 ORTHO05D006765 5.4e-74 281.2 173 82.1
Thecc.09G357600 Theobroma cacao HOM05D005631 ORTHO05D006765 7.1e-74 280.8 174 85.1
QL01p026260 Quercus lobata HOM05D005631 ORTHO05D006765 9.3e-74 280.4 173 83.8
Actinidia23857 Actinidia chinensis HOM05D005631 ORTHO05D006765 2.7e-73 278.9 174 83.3
CSS0000896 Camellia sinensis var. sinensis HOM05D005631 ORTHO05D006765 1.0e-72 276.9 174 83.3
Cpa.g.sc2.358 Carica papaya HOM05D005631 ORTHO05D006765 1.0e-72 276.9 175 84.0
GSVIVG01033331001 Vitis vinifera HOM05D005631 ORTHO05D006765 1.0e-72 276.9 174 83.3
FAN25G2299 Fragaria x ananassa HOM05D005631 ORTHO05D006765 1.3e-72 276.6 173 84.4
Glyma.11G164100 Glycine max HOM05D005631 ORTHO05D006765 1.3e-72 276.6 174 82.8
Gohir.A03G025600 Gossypium hirsutum HOM05D005631 ORTHO05D006765 3.9e-72 275.0 174 83.3
Gohir.D03G142900 Gossypium hirsutum HOM05D005631 ORTHO05D006765 3.9e-72 275.0 174 83.3
Gorai.003G150100 Gossypium raimondii HOM05D005631 ORTHO05D006765 3.9e-72 275.0 174 83.3
Manes.02G211700 Manihot esculenta HOM05D005631 ORTHO05D006765 6.6e-72 274.2 174 83.9
Potri.013G152600 Populus trichocarpa HOM05D005631 ORTHO05D006765 6.2e-70 267.7 174 81.0
SGA_v2.0_scaffold18G08260 Striga asiatica HOM05D005631 ORTHO05D006765 1.1e-69 266.9 174 80.5
arahy.Tifrunner.gnm1.ann1.7E53FC Arachis hypogaea HOM05D005631 ORTHO05D006765 1.4e-69 266.5 183 78.1
Rhsim01G0240900 Rhododendron simsii HOM05D005631 ORTHO05D006765 1.4e-69 266.5 176 81.2
Sabra13G0122700 Salix brachista HOM05D005631 ORTHO05D006765 1.4e-69 266.5 174 81.0
Hund18954 Selenicereus undatus HOM05D000127 ORTHO05D006765 3.1e-69 265.4 175 81.7
Lsat_1_v5_gn_6_47101 Lactuca sativa HOM05D005631 ORTHO05D006765 1.2e-68 263.5 174 78.7
arahy.Tifrunner.gnm1.ann1.I7JS5F Arachis hypogaea HOM05D005631 ORTHO05D006765 1.5e-68 263.1 174 81.0
Lj6g0005877 Lotus japonicus HOM05D005631 ORTHO05D006765 1.5e-68 263.1 174 81.6
Hma1.2p1_1586F.1_g292190 Hydrangea macrophylla HOM05D005631 ORTHO05D006765 2.0e-68 262.7 174 79.9
PGR102G0278 Punica granatum HOM05D005631 ORTHO05D006765 2.6e-68 262.3 175 82.3
HPP92_019076 Vanilla planifolia HOM05D005631 ORTHO05D006765 4.5e-68 261.5 174 79.9
HanXRQChr10g0284941 Helianthus annuus HOM05D005631 ORTHO05D006765 9.9e-68 260.4 174 78.7
Oeu059694.1 Olea europaea HOM05D005631 ORTHO05D006765 9.9e-68 260.4 174 78.2
ATR0304G021 Amborella trichopoda HOM05D005631 ORTHO05D006765 2.9e-67 258.8 174 78.7
vmacro14621 Vaccinium macrocarpon HOM05D005631 ORTHO05D006765 4.9e-67 258.1 177 79.7
DCAR_004046 Daucus carota HOM05D005631 ORTHO05D006765 6.4e-67 257.7 174 78.2
Migut.H00695 Erythranthe guttata HOM05D005631 ORTHO05D006765 8.4e-67 257.3 174 77.6
SGA_v2.0_scaffold20G09058 Striga asiatica HOM05D005631 ORTHO05D006765 8.4e-67 257.3 179 78.8
Atru.chr3.4122 Acer truncatum HOM05D005631 ORTHO05D006765 1.4e-66 256.5 166 81.9
VMungo1383G2760 Vigna mungo HOM05D005631 ORTHO05D006765 7.1e-66 254.2 152 84.9
Ciclev10029319m.g Citrus clementina HOM05D005631 ORTHO05D006765 1.6e-65 253.1 167 81.4
THA.LOC104810692 Tarenaya hassleriana HOM05D005631 ORTHO05D006765 2.7e-65 252.3 174 75.3
Nitab4.5_0003548g0030 Nicotiana tabacum HOM05D005631 ORTHO05D006765 3.5e-65 251.9 173 75.7
SalBow1G1570 Salvia bowleyana HOM05D005631 ORTHO05D006765 4.6e-65 251.5 174 77.0
Eucgr.B04002 Eucalyptus grandis HOM05D005631 ORTHO05D006765 7.9e-65 250.8 175 77.1
MSTRG.2645 Avicennia marina HOM05D005631 ORTHO05D006765 1.0e-64 250.4 174 76.4
TAR633G1157 Trochodendron aralioides HOM05D005631 ORTHO05D006765 1.8e-64 249.6 174 75.9
Nn1g05206 Nelumbo nucifera HOM05D005631 ORTHO05D006765 1.1e-63 246.9 174 77.0
PSO349G0142 Papaver somniferum HOM05D005631 ORTHO05D006765 1.5e-63 246.5 174 77.0
A03p12230 Brassica napus HOM05D005631 ORTHO05D006765 3.3e-63 245.4 174 74.1
C03p14340 Brassica napus HOM05D005631 ORTHO05D006765 3.3e-63 245.4 174 74.1
BraA03t10534Z Brassica rapa HOM05D005631 ORTHO05D006765 3.3e-63 245.4 174 74.1
Aa31LG11G240 Aethionema arabicum HOM05D000127 ORTHO05D007184 7.4e-63 244.2 175 72.0
AL7G45820 Arabidopsis lyrata HOM05D005631 ORTHO05D006765 9.6e-63 243.8 174 73.0
C09p50330 Brassica napus HOM05D005631 ORTHO05D006765 1.3e-62 243.4 174 73.0
CAN.G354.39 Capsicum annuum HOM05D005631 ORTHO05D006765 1.3e-62 243.4 174 73.6
BraA10t43643Z Brassica rapa HOM05D005631 ORTHO05D006765 1.6e-62 243.0 174 73.0
Solyc03g033480.4 Solanum lycopersicum HOM05D005631 ORTHO05D006765 2.1e-62 242.7 173 72.3
PGSC0003DMG400022531 Solanum tuberosum HOM05D005631 ORTHO05D006765 3.7e-62 241.9 173 72.3
A10p15820 Brassica napus HOM05D005631 ORTHO05D006765 4.8e-62 241.5 174 72.4
BcaB08g36180 Brassica carinata HOM05D005631 ORTHO05D006765 6.2e-62 241.1 174 72.4
BcaC04g19866 Brassica carinata HOM05D005631 ORTHO05D006765 6.2e-62 241.1 174 72.4
BolC9t57889H Brassica oleracea HOM05D005631 ORTHO05D006765 6.2e-62 241.1 174 72.4
Carub.0007s3232 Capsella rubella HOM05D005631 ORTHO05D006765 6.2e-62 241.1 174 71.3
AT5G37055 Arabidopsis thaliana HOM05D005631 ORTHO05D006765 1.1e-61 240.4 174 71.8
Thhalv10014837m.g Eutrema salsugineum HOM05D005631 ORTHO05D006765 1.1e-61 240.4 174 73.0
Nitab4.5_0000438g0150 Nicotiana tabacum HOM05D005631 ORTHO05D006765 1.8e-61 239.6 173 72.8
BolC3t13878H Brassica oleracea HOM05D005631 ORTHO05D006765 6.9e-61 237.7 175 73.1
Sopen03g006230 Solanum pennellii HOM05D005631 ORTHO05D006765 9.0e-61 237.3 173 71.1
CARHR272280 Cardamine hirsuta HOM05D005631 ORTHO05D006765 2.6e-60 235.7 168 73.2
Phvul.006G073900 Phaseolus vulgaris HOM05D005631 ORTHO05D006765 5.8e-60 234.6 150 83.3
Ca_15008_v3 Cicer arietinum L. HOM05D005631 ORTHO05D006765 1.7e-59 233.0 150 82.7
unitig_899.g14680 Utricularia gibba HOM05D005631 ORTHO05D006765 1.6e-57 226.5 174 70.7
Cc07_g10850 Coffea canephora HOM05D005631 ORTHO05D006765 3.5e-57 225.3 176 71.0
Os03g0367800 Oryza sativa ssp. japonica HOM05D005631 ORTHO05D006765 3.5e-57 225.3 173 67.6
ECA248G0403 Erigeron canadensis HOM05D005631 ORTHO05D006765 1.3e-56 223.4 168 72.6
Zm00001eb195120 Zea mays HOM05D005631 ORTHO05D006765 8.7e-56 220.7 175 65.7
COL.COLO4_11152 Corchorus olitorius HOM05D005631 ORTHO05D006765 1.1e-55 220.3 139 82.0
Aqoxy1G01288 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 2.8e-54 215.7 169 71.0
Mapoly0066s0110 Marchantia polymorpha HOM05D005631 ORTHO05D006765 2.2e-51 206.1 178 60.1
SEGI_31870 Sequoiadendron giganteum HOM05D005631 ORTHO05D006765 1.1e-50 203.8 140 71.4
TPR.G25706 Trifolium pratense HOM05D005631 ORTHO05D006765 5.5e-50 201.4 137 79.6
EL10Ac7g15917 Beta vulgaris HOM05D005631 ORTHO05D006765 2.7e-49 199.1 173 63.0
Psat5g026160 Pisum sativum HOM05D005631 ORTHO05D006765 1.1e-47 193.7 137 78.1
Sabra06G0125700 Salix brachista HOM05D005631 ORTHO05D006765 1.1e-47 193.7 157 70.7
Pp3c4_18980 Physcomitrium patens HOM05D005631 ORTHO05D006765 7.4e-47 191.0 168 61.9
VMungo0540G1856 Vigna mungo HOM05D005631 ORTHO05D006765 1.6e-46 189.9 124 79.8
AUR62009671 Chenopodium quinoa HOM05D005631 ORTHO05D006765 2.0e-44 183.0 137 74.5
AUR62001872 Chenopodium quinoa HOM05D005631 ORTHO05D006765 1.0e-43 180.6 137 73.0
SMO134G0149 Selaginella moellendorffii HOM05D005631 ORTHO05D006765 1.1e-42 177.2 179 55.9
Oeu059678.1 Olea europaea HOM05D005631 ORTHO05D006765 5.5e-42 174.9 152 63.8
Peaxi162Scf00635g00621 Petunia axillaris HOM05D005631 ORTHO05D006765 5.5e-42 174.9 173 56.1
BcaB01g04521 Brassica carinata HOM05D005631 ORTHO05D006765 2.0e-39 166.4 154 62.3
Atru.chr3.4121 Acer truncatum HOM05D005631 ORTHO05D006765 2.2e-38 162.9 164 59.8
Duzib150G1412 Durio zibethinus HOM05D005631 ORTHO05D006765 4.5e-36 155.2 115 80.9
CiPaw.13G069500 Carya illinoinensis HOM05D005631 ORTHO05D006765 2.7e-33 146.0 106 76.4
Actinidia34479 Actinidia chinensis HOM05D005631 ORTHO05D006765 9.7e-31 137.5 109 73.4
CDE09G1253 Ceratophyllum demersum HOM05D001009 ORTHO05D000829 1.7e-30 136.7 112 72.3
Sp6g20150 Schrenkiella parvula HOM05D000127 ORTHO05D007184 2.0e-28 129.8 104 71.2
AagrBONN_evm.TU.Sc2ySwM_117.69 Anthoceros agrestis HOM05D005631 ORTHO05D006765 6.1e-25 118.2 173 42.8
Sc21g0005270 Simmondsia chinensis HOM05D005631 ORTHO05D006765 8.8e-24 114.4 106 67.0
MCO05G013 Micromonas commoda HOM05D005631 ORTHO05D006765 5.7e-23 111.7 164 42.7
Oeu008095.1 Olea europaea HOM05D005631 ORTHO05D006765 4.2e-18 95.5 69 75.4
Sabra19G0122200 Salix brachista HOM05D005631 ORTHO05D006765 9.4e-18 94.4 99 62.6
MBI18_g07568_MAGBIO Magnolia biondii HOM05D005631 ORTHO05D006765 2.1e-17 93.2 80 67.5
Sabra16G0029400 Salix brachista HOM05D005631 ORTHO05D006765 2.3e-16 89.7 99 60.6
BcaC09g51457 Brassica carinata HOM05D005631 ORTHO05D006765 2.8e-14 82.8 61 73.8
A08p25520 Brassica napus HOM05D005631 ORTHO05D006765 8.3e-14 81.3 61 72.1
BolC1t05347H Brassica oleracea HOM05D005631 ORTHO05D006765 1.1e-13 80.9 61 72.1
BcaC09g51408 Brassica carinata HOM05D005631 ORTHO05D006765 3.1e-13 79.3 61 72.1
Sabra07G0096200 Salix brachista HOM05D005274 ORTHO05D006765 4.1e-13 79.0 98 59.2
BcaC05g26847 Brassica carinata HOM05D005631 ORTHO05D006765 5.4e-13 78.6 93 53.8
BcaC08g44597 Brassica carinata HOM05D005631 ORTHO05D006765 7.0e-13 78.2 62 72.6
Oeu008088.1 Olea europaea HOM05D005631 ORTHO05D006765 1.2e-12 77.4 76 53.9
CDE02G1786 Ceratophyllum demersum HOM05D005631 ORTHO05D006765 1.6e-12 77.0 122 50.8
A07p13430 Brassica napus HOM05D005631 ORTHO05D006765 5.9e-12 75.1 61 70.5
Sabra02G0153300 Salix brachista HOM05D005631 ORTHO05D006765 1.0e-11 74.3 67 74.6
Sabra08G0141900 Salix brachista HOM05D000225 ORTHO05D002520 1.9e-10 70.1 71 62.0
Sabra04G0079400 Salix brachista HOM05D005631 ORTHO05D006765 7.2e-10 68.2 80 56.2
Cc05_g02510 Coffea canephora HOM05D005631 ORTHO05D006765 2.1e-09 66.6 108 49.1
Sabra19G0131600 Salix brachista HOM05D005631 ORTHO05D006765 2.1e-09 66.6 95 52.6
Cre01.g044000 Chlamydomonas reinhardtii HOM05D005631 ORTHO05D006765 6.1e-09 65.1 144 37.5
C01p12950 Brassica napus HOM05D005631 ORTHO05D006765 1.4e-08 63.9 44 79.5
Sabra15G0067400 Salix brachista HOM05D003748 ORTHO05D004108 1.8e-08 63.5 82 52.4
C01p13430 Brassica napus HOM05D005631 ORTHO05D006765 5.2e-08 62.0 44 77.3
C04p57300 Brassica napus HOM05D005631 ORTHO05D006765 6.8e-08 61.6 44 77.3
BcaC02g08205 Brassica carinata HOM05D005631 ORTHO05D006765 3.4e-07 59.3 48 66.7
Aqoxy1G01289 Aquilegia oxysepala HOM05D005631 ORTHO05D006765 7.5e-07 58.2 46 76.1
Sabra10G0082900 Salix brachista HOM05D005631 ORTHO05D006765 1.7e-06 57.0 60 56.7
Sabra16G0093500 Salix brachista HOM05D005274 ORTHO05D007424 3.7e-06 55.8 60 55.0


User provided reference genes

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