Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 0.0e+00 1303.1 751 100.0
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 0.0e+00 1211.8 751 93.1
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 0.0e+00 1178.3 751 91.5
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 0.0e+00 1099.0 754 87.4
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 0.0e+00 1097.4 754 87.7
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 0.0e+00 1093.6 754 87.3
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 0.0e+00 1092.4 754 87.1
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 0.0e+00 1088.9 754 87.0
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.1e-311 1072.0 779 84.0
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 4.9e-289 997.7 754 80.4
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 6.4e-289 997.3 755 80.1
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 6.0e-287 990.7 751 79.6
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 2.6e-282 975.3 754 78.4
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.3e-278 963.0 752 79.1
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.3e-278 963.0 752 79.1
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 1.1e-277 959.9 762 76.4
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 3.3e-277 958.4 744 78.0
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 9.7e-277 956.8 760 78.0
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 9.0e-275 950.3 755 77.7
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 1.5e-274 949.5 797 63.0
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 2.6e-274 948.7 756 78.8
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 1.0e-273 946.8 758 78.2
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 2.9e-273 945.3 759 77.1
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 2.7e-271 938.7 752 77.1
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 3.9e-270 934.9 775 74.1
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 1.1e-269 933.3 758 75.7
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 2.0e-269 932.6 640 72.7
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 2.5e-269 932.2 751 75.5
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 1.7e-268 929.5 638 75.1
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 5.9e-266 921.0 752 76.6
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 1.0e-265 920.2 752 75.4
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 7.9e-263 910.6 833 70.8
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.1e-261 906.7 754 75.2
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 2.0e-261 906.0 756 74.7
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 1.4e-259 899.8 764 73.0
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 5.3e-259 897.9 764 72.8
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 5.3e-259 897.9 765 74.8
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 5.3e-259 897.9 751 74.3
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 7.7e-258 894.0 759 72.6
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.0e-257 893.6 754 74.5
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 1.3e-257 893.3 765 73.2
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.2e-257 892.5 754 74.5
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 2.9e-257 892.1 787 71.0
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 5.0e-257 891.3 762 72.7
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.5e-257 891.0 755 74.4
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 8.5e-257 890.6 755 74.4
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 1.9e-256 889.4 757 73.4
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 7.2e-256 887.5 750 74.0
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 4.7e-255 884.8 779 72.5
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 1.4e-254 883.2 751 73.4
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 3.0e-254 882.1 759 73.1
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 6.7e-254 880.9 755 73.1
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 2.0e-253 879.4 758 73.1
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 3.3e-253 878.6 846 67.0
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 2.2e-252 875.9 757 73.6
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 8.2e-252 874.0 789 61.3
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 8.2e-252 874.0 766 71.5
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 1.4e-251 873.2 754 73.2
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 7.0e-251 870.9 793 61.9
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 3.5e-250 868.6 757 71.7
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 5.9e-250 867.8 752 74.2
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 1.7e-249 866.3 752 73.9
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 3.8e-249 865.1 752 74.1
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 4.7e-247 858.2 753 72.2
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 4.0e-246 855.1 779 69.8
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 5.2e-246 854.7 778 69.0
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 5.2e-246 854.7 752 73.5
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 8.8e-246 854.0 756 73.5
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 8.3e-244 847.4 780 63.1
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 2.4e-243 845.9 751 69.4
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 7.0e-243 844.3 752 70.3
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 1.2e-242 843.6 758 72.7
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 3.5e-242 842.0 751 70.3
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 5.9e-242 841.3 758 71.4
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 5.9e-242 841.3 758 71.4
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 1.0e-241 840.5 788 68.1
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 2.2e-241 839.3 756 72.1
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 1.9e-240 836.3 753 70.4
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 2.1e-239 832.8 756 72.1
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 4.7e-239 831.6 799 67.8
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 8.8e-238 827.4 751 69.5
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 4.4e-237 825.1 842 65.8
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 9.8e-237 823.9 750 72.3
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 7.0e-235 817.8 751 69.0
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 2.7e-234 815.8 753 68.8
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 4.5e-234 815.1 753 69.5
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 1.3e-233 813.5 754 69.6
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 1.1e-232 810.4 684 73.7
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 1.5e-232 810.1 753 68.9
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 1.5e-232 810.1 642 68.5
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 4.7e-231 805.1 751 68.7
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 1.2e-229 800.4 751 68.2
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 1.4e-227 793.5 752 68.0
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 7.0e-227 791.2 752 68.6
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 2.0e-226 789.6 754 67.5
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 3.9e-225 785.4 761 66.1
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.5e-224 782.7 752 68.4
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 1.5e-221 773.5 754 67.2
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 6.0e-218 761.5 774 55.3
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 5.0e-217 758.4 785 63.9
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 9.8e-213 744.2 795 64.3
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 1.4e-211 740.3 810 63.3
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 6.2e-207 724.9 752 65.7
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 1.4e-206 723.8 751 64.0
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 3.6e-199 699.1 1246 45.7
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 5.2e-198 695.3 566 66.6
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 2.9e-196 689.5 755 59.1
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.4e-195 687.2 550 79.6
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 3.5e-186 656.0 724 62.8
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.6e-165 586.6 451 67.0
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 3.8e-164 582.8 770 54.3
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 1.1e-163 581.3 774 55.3
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 2.4e-158 563.5 538 57.2
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 9.0e-158 561.6 764 57.3
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 3.8e-156 556.2 765 55.4
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 3.3e-152 543.1 764 55.8
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 7.9e-146 521.9 768 53.0
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 1.1e-136 491.5 439 58.5
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 9.2e-118 428.7 651 42.7
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 2.2e-111 407.5 361 82.3
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 9.2e-110 402.1 364 80.8
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.2e-109 401.7 383 57.4
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.5e-104 384.8 388 76.0
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 5.6e-99 366.3 304 90.8
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 1.0e-92 345.5 378 52.6
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 3.9e-84 317.0 334 55.1
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 1.6e-77 295.0 492 40.0
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.1e-74 284.6 301 54.5
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 2.4e-73 281.2 202 65.8
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 4.5e-72 276.9 758 31.7
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.2e-70 270.8 165 78.8
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 1.5e-67 261.9 872 38.4
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 2.2e-63 248.1 486 36.6
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 3.3e-59 234.2 150 74.7
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 1.0e-52 212.6 706 30.2
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-48 199.1 236 48.7
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.6e-42 178.7 236 46.2
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.9e-39 167.9 106 79.2
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.1e-37 160.2 92 85.9
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 6.1e-37 160.2 152 55.3
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 3.0e-36 157.9 109 69.7
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.9e-36 157.5 236 41.9
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.0e-32 145.2 81 87.7
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.9e-30 138.7 82 80.5
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.5e-30 137.1 84 81.0
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 1.6e-29 135.6 142 55.6
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 6.7e-28 130.2 167 48.5
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 1.1e-25 122.9 93 71.0
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-25 122.9 67 82.1
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.1e-25 120.9 101 66.3
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.2e-24 119.4 159 50.3
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 8.5e-23 113.2 70 77.1
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 1.1e-22 112.8 82 72.0
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 7.2e-22 110.2 155 95.5
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 9.4e-22 109.8 61 83.6
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.1e-21 108.6 61 82.0
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-20 105.9 60 86.7
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 2.0e-19 102.1 117 54.7
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.4e-19 100.9 78 61.5
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 3.7e-18 97.8 154 90.9
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 1.8e-17 95.5 143 44.1
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 5.0e-15 87.4 187 36.9
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.5e-15 87.0 50 74.0
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.5e-11 75.9 60 70.0
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 4.1e-09 67.8 144 38.9
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 4.1e-09 67.8 301 26.6
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 6.5e-07 60.5 30 93.3
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 1.9e-06 58.9 43 69.8
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.5e-06 58.5 29 93.1
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 2.5e-06 58.5 30 90.0


User provided reference genes

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