Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 2.5e-297 1024.6 506 100.0
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 3.3e-244 848.2 474 87.1
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 6.9e-210 734.2 475 76.0
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 2.6e-209 732.3 472 75.8
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 7.6e-209 730.7 472 75.6
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 1.6e-203 713.0 471 72.2
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 7.6e-201 704.1 474 70.9
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 1.3e-197 693.3 474 69.6
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 8.7e-197 690.6 487 71.3
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 5.3e-194 681.4 472 68.4
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 7.6e-193 677.6 472 68.9
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 1.5e-188 663.3 470 67.7
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 1.3e-187 660.2 469 68.0
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 2.1e-187 659.4 469 68.0
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 1.2e-185 653.7 468 67.9
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 1.9e-183 646.4 484 66.9
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 2.4e-178 629.4 458 67.9
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 4.5e-177 625.2 475 64.6
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 5.9e-177 624.8 498 65.3
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 1.0e-176 624.0 474 64.1
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 1.3e-176 623.6 479 63.9
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 3.8e-176 622.1 477 64.6
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 9.4e-175 617.5 475 63.8
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 1.2e-174 617.1 471 63.1
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 4.3e-172 608.6 496 60.9
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 5.3e-170 601.7 471 62.2
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 1.2e-169 600.5 473 62.8
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 2.6e-169 599.4 474 60.3
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 4.5e-169 598.6 469 62.0
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 5.9e-169 598.2 472 60.4
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 1.9e-167 593.2 474 58.2
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 3.2e-167 592.4 471 61.8
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.4e-165 587.0 455 61.3
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 3.0e-165 585.9 484 59.3
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 5.1e-165 585.1 526 56.7
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 1.1e-164 583.9 472 60.4
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 5.7e-164 581.6 476 60.7
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 1.3e-160 570.5 524 57.3
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 2.2e-160 569.7 480 58.3
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 2.2e-160 569.7 465 58.3
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 8.5e-160 567.8 471 60.1
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 1.2e-158 563.9 482 56.2
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 1.0e-157 560.8 479 57.4
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 5.7e-156 555.1 569 52.9
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 7.5e-156 554.7 388 71.4
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 9.7e-156 554.3 472 57.2
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 5.9e-153 545.0 475 57.1
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 1.0e-152 544.3 471 57.1
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 3.2e-151 539.3 476 55.9
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 1.6e-150 537.0 376 68.4
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 8.8e-149 531.2 473 56.2
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 9.8e-148 527.7 470 55.7
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 1.3e-147 527.3 473 54.8
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 2.8e-147 526.2 390 65.9
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 3.1e-146 522.7 477 56.8
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 5.4e-146 521.9 475 55.4
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 2.0e-145 520.0 470 56.0
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 2.0e-145 520.0 394 63.2
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 4.5e-145 518.8 475 54.7
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 2.9e-144 516.2 475 55.2
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 3.8e-144 515.8 474 55.1
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 3.6e-142 509.2 481 53.2
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 8.0e-142 508.1 471 54.1
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 5.7e-140 501.9 510 49.2
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 9.8e-140 501.1 515 51.1
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 9.8e-140 501.1 476 52.9
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 9.8e-140 501.1 479 53.0
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 1.3e-139 500.7 488 53.7
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 3.7e-139 499.2 518 51.5
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 4.9e-139 498.8 433 59.6
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 9.2e-138 494.6 387 63.8
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 2.7e-137 493.0 521 49.9
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 3.5e-137 492.7 473 52.4
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 2.9e-136 489.6 483 53.2
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 5.6e-135 485.3 478 53.3
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 8.0e-134 481.5 472 50.8
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 5.7e-132 475.3 468 52.4
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 9.8e-132 474.6 461 53.6
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 1.2e-129 467.6 469 50.7
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 8.0e-126 454.9 510 46.3
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 2.2e-123 446.8 501 48.5
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 2.7e-121 439.9 478 49.0
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 1.7e-115 420.6 466 47.9
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 3.3e-111 406.4 479 45.1
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 1.6e-110 404.1 326 60.1
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 6.8e-109 398.7 477 44.4
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 2.6e-108 396.7 329 56.2
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 1.2e-105 387.9 314 60.8
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 6.8e-101 372.1 475 42.7
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 6.4e-99 365.5 257 68.5
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 2.7e-97 360.1 291 59.5
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 2.8e-94 350.1 287 58.5
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 2.9e-91 340.1 278 60.4
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 2.7e-89 333.6 285 56.8
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 6.9e-85 318.9 329 51.7
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 4.5e-84 316.2 290 55.5
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 3.2e-82 310.1 492 34.6
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 9.3e-74 282.0 208 63.0
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 7.6e-68 262.3 512 31.4
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 6.7e-64 249.2 158 69.6
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 2.5e-63 247.3 168 69.6
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 4.3e-63 246.5 191 59.2
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 6.9e-61 239.2 220 54.5
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 7.7e-60 235.7 187 59.4
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 6.5e-59 232.6 184 61.4
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 2.6e-52 210.7 483 31.3
Lj1A361T11 Lonicera japonica HOM05D006389 ORTHO05D007863 3.3e-47 193.7 161 55.9
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-37 162.2 372 30.6
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 5.3e-37 159.8 131 58.0
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 7.7e-36 156.0 192 43.2
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 1.2e-23 115.5 132 44.7
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 4.4e-23 113.6 91 60.4
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 7.5e-23 112.8 85 63.5
vmacro04177 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 8.6e-19 99.4 89 49.4
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 4.3e-18 97.1 273 26.7
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 2.0e-15 88.2 53 73.6
MCO05G648 Micromonas commoda HOM05D006389 ORTHO05D007863 2.6e-15 87.8 360 25.6
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 7.5e-15 86.3 155 36.1
Peaxi162Scf00559g00110 Petunia axillaris HOM05D006389 ORTHO05D007863 3.0e-11 74.3 55 58.2
MBI01_g14332_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 2.8e-09 67.8 102 43.1
SEGI_11371 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 1.5e-07 62.0 53 54.7
Prupe.6G030900 Prunus persica HOM05D000913 ORTHO05D000687 5.8e-07 60.1 30 90.0
SEGI_20259 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 2.9e-06 57.8 58 46.6


User provided reference genes

Program Settings