Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 0.0e+00 1338.2 658 100.0
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 0.0e+00 1204.5 659 90.3
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 0.0e+00 1184.1 654 90.4
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 0.0e+00 1144.4 659 86.0
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 0.0e+00 1144.0 659 86.2
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 0.0e+00 1141.7 659 85.7
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 0.0e+00 1137.1 664 85.2
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 0.0e+00 1109.7 651 84.9
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 0.0e+00 1085.5 659 82.2
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 4.5e-312 1074.7 657 80.7
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 1.8e-311 1072.0 657 80.4
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 4.9e-309 1063.9 665 80.3
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 7.8e-307 1056.6 662 79.3
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 1.7e-306 1055.4 657 80.8
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 1.2e-302 1042.7 718 74.5
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 9.9e-302 1039.6 654 79.5
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 2.9e-301 1038.1 663 78.4
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 5.4e-300 1033.9 669 77.9
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 7.1e-300 1033.5 656 77.9
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 2.7e-299 1031.6 663 77.8
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 3.5e-299 1031.2 674 77.3
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 1.8e-298 1028.9 667 77.8
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 2.3e-298 1028.5 666 77.2
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 5.1e-298 1027.3 593 84.3
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 1.5e-297 1025.8 665 76.8
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 3.3e-297 1024.6 667 77.7
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 4.3e-297 1024.2 670 76.1
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 2.1e-296 1021.9 656 76.7
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 2.8e-296 1021.5 591 83.2
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 3.7e-296 1021.1 604 82.0
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 4.8e-296 1020.8 663 77.7
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 6.2e-296 1020.4 597 83.1
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 8.1e-296 1020.0 583 83.7
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 1.4e-295 1019.2 645 78.1
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 2.6e-294 1015.0 661 76.6
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.4e-292 1009.2 655 76.2
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 1.9e-292 1008.8 673 74.7
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 3.0e-290 1001.5 593 81.1
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 1.1e-289 999.6 546 87.0
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 2.5e-289 998.4 635 77.6
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 2.5e-289 998.4 657 76.1
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 3.3e-289 998.0 588 81.0
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 5.7e-289 997.3 604 81.1
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 7.4e-289 996.9 655 75.9
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 2.1e-288 995.3 645 76.6
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.8e-288 995.0 655 75.9
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 8.2e-288 993.4 583 81.6
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 1.1e-287 993.0 593 80.9
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 1.8e-287 992.3 588 80.8
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 2.4e-287 991.9 642 76.6
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.4e-287 991.9 590 80.8
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 3.1e-287 991.5 587 82.1
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 5.3e-287 990.7 652 75.9
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 6.9e-287 990.3 583 81.6
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.6e-286 988.4 590 80.8
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 5.8e-286 987.3 565 83.4
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.0e-285 986.5 590 80.7
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 1.0e-285 986.5 650 75.4
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 1.0e-285 986.5 586 81.2
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 1.3e-285 986.1 583 81.3
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 1.7e-285 985.7 564 83.2
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 3.8e-285 984.6 660 74.1
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 2.5e-284 981.9 588 81.5
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 2.5e-284 981.9 626 76.4
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 2.5e-284 981.9 590 80.3
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 4.2e-284 981.1 625 75.8
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 7.1e-284 980.3 592 80.2
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 1.6e-283 979.2 586 81.1
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 2.7e-283 978.4 661 73.4
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 7.9e-283 976.9 625 75.7
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 7.9e-283 976.9 592 79.7
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 1.0e-282 976.5 583 80.1
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 1.8e-282 975.7 626 75.9
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 1.8e-282 975.7 592 78.7
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 1.8e-282 975.7 650 74.0
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 2.3e-282 975.3 625 75.5
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 1.9e-281 972.2 658 73.9
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 1.9e-281 972.2 641 74.1
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 2.5e-281 971.8 548 84.7
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 3.3e-281 971.5 550 83.5
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 4.3e-281 971.1 641 73.6
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 5.7e-281 970.7 545 83.7
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 7.4e-281 970.3 598 77.8
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 1.6e-280 969.1 591 79.5
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 1.6e-280 969.1 620 77.4
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.8e-279 965.7 646 75.2
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 2.4e-279 965.3 528 86.9
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 2.6e-278 961.8 584 79.1
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 2.2e-277 958.7 546 82.4
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 3.8e-277 958.0 640 73.8
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 6.5e-277 957.2 655 72.8
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 1.1e-276 956.4 655 72.8
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 1.4e-276 956.1 640 73.6
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 4.2e-276 954.5 768 66.0
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 1.0e-274 949.9 655 73.3
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.5e-273 946.0 655 72.8
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 2.5e-273 945.3 531 84.0
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 5.7e-273 944.1 642 75.5
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 2.2e-272 942.2 594 76.4
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 1.8e-271 939.1 557 79.4
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 3.4e-270 934.9 640 72.2
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 1.9e-268 929.1 546 80.0
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 4.2e-268 927.9 647 73.0
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 7.2e-268 927.2 628 73.2
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 1.2e-267 926.4 647 72.8
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 8.2e-264 913.7 631 72.1
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 7.0e-263 910.6 570 77.5
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 5.5e-260 901.0 532 79.5
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 2.8e-256 888.6 587 74.4
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 2.6e-254 882.1 628 70.2
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 1.5e-252 876.3 547 76.4
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.3e-250 869.0 439 94.5
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 6.8e-250 867.5 583 74.3
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 5.7e-249 864.4 576 75.3
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.3e-248 863.2 646 68.9
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 7.0e-239 830.9 554 74.7
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 7.7e-238 827.4 448 88.4
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 1.6e-235 819.7 564 69.3
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 6.1e-235 817.8 448 87.5
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 8.3e-232 807.4 537 74.1
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 5.9e-230 801.2 547 70.2
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 1.4e-226 790.0 601 63.4
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 2.8e-211 739.2 517 70.0
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.2e-203 713.8 513 70.0
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 5.3e-194 681.8 452 73.2
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 1.2e-185 654.1 538 60.0
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 3.7e-179 632.5 361 82.8
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 1.4e-170 604.0 344 84.6
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 1.5e-169 600.5 593 56.7
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 1.5e-153 547.4 360 75.6
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 4.8e-147 525.8 561 49.4
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 4.5e-145 519.2 561 52.9
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 3.8e-144 516.2 278 89.2
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 6.1e-142 508.8 417 63.5
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 1.8e-141 507.3 280 85.7
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 2.5e-135 486.9 357 70.3
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.3e-120 438.0 574 44.3
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 1.7e-112 411.0 288 68.8
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 1.3e-99 368.2 643 37.2
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 1.2e-97 361.7 184 91.8
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 3.5e-97 360.1 263 71.9
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 5.6e-95 352.8 179 95.0
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 2.0e-84 317.8 188 79.3
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.4e-84 317.0 179 85.5
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 1.9e-79 301.2 605 35.0
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 4.3e-79 300.1 167 86.2
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 9.0e-77 292.4 530 35.8
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 5.4e-74 283.1 585 33.5
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.3e-67 261.9 321 47.7
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.7e-65 254.2 140 85.7
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 3.0e-64 250.8 609 32.2
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 5.6e-63 246.5 197 64.0
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 6.2e-62 243.0 605 31.2
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 1.3e-51 208.8 120 85.8
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 1.2e-49 202.2 117 81.2
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 9.7e-47 192.6 107 85.0
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 1.6e-46 191.8 100 90.0
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 7.2e-42 176.4 138 63.8
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 1.5e-39 168.7 155 56.8
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.1e-33 148.3 125 61.6
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 1.3e-30 139.0 77 80.5
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 3.1e-29 134.4 67 91.0
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 9.1e-29 132.9 139 52.5
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 2.0e-28 131.7 65 92.3
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 1.5e-26 125.6 104 62.5
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 1.4e-21 109.0 64 82.8
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 5.2e-16 90.5 80 60.0
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 2.0e-12 78.6 78 57.7
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.8e-11 74.3 54 68.5
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 1.2e-07 62.8 39 64.1
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 2.2e-06 58.5 76 43.4
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 3.7e-06 57.8 86 41.9


User provided reference genes

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