Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1359.0 687 100.0
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1239.2 688 91.9
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1216.8 637 95.6
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1211.4 645 94.4
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1210.7 679 90.6
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1203.0 645 93.6
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1197.6 673 90.3
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1193.3 636 93.6
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1189.5 636 92.5
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1187.6 636 92.6
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1186.4 636 92.5
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1185.6 636 92.9
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1184.1 636 92.6
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1184.1 635 92.6
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1183.7 636 92.5
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1182.9 636 92.1
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1180.6 635 92.0
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1179.9 646 91.0
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1179.5 682 87.0
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1177.2 632 92.6
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1177.2 636 91.7
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1175.6 636 91.7
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1174.5 633 91.9
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1174.1 636 91.5
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1174.1 633 91.9
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1173.7 636 91.8
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1173.3 636 91.0
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1172.9 633 92.3
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1171.8 636 91.4
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1171.0 635 91.0
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1170.6 633 92.3
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1168.7 636 90.6
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1168.7 636 91.0
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1167.9 632 91.5
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1167.5 636 91.0
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1166.8 633 90.8
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1166.0 630 91.4
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1166.0 642 90.3
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1164.1 636 90.7
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1163.3 636 91.4
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1162.1 637 90.1
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1161.7 640 90.2
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1159.8 637 90.1
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1159.1 639 90.0
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1158.3 645 88.7
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1157.9 642 89.4
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1157.5 632 90.2
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1157.1 636 89.8
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1155.2 636 89.2
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 634 89.0
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1154.4 636 89.8
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1154.0 636 89.5
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1154.0 671 86.1
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1153.7 635 89.9
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1153.3 684 84.2
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1152.1 636 89.3
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1149.8 640 88.4
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1149.4 633 88.9
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1148.3 633 89.3
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1147.9 632 88.8
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1147.9 633 89.3
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1147.5 634 88.6
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1146.7 634 88.8
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1146.7 636 88.5
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1146.3 634 88.8
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1146.0 634 88.6
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1146.0 634 88.6
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1146.0 634 88.6
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1146.0 633 88.8
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 634 88.5
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1144.4 630 89.2
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 640 87.7
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1143.6 632 90.0
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1143.3 630 90.2
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1141.3 634 88.3
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1140.9 635 88.2
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 641 88.5
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1139.0 662 86.0
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1138.6 634 88.0
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1138.6 635 87.7
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1138.3 628 89.3
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1137.9 630 89.7
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1137.1 638 88.4
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1136.3 631 90.3
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1135.6 635 89.1
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1127.9 642 86.0
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1125.5 642 86.0
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1122.1 640 87.5
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1121.3 636 86.6
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1121.3 642 85.8
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1120.1 632 86.2
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1118.2 632 86.1
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1117.8 633 87.4
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1117.8 640 85.8
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1117.8 632 86.9
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1113.6 636 86.2
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1094.3 642 84.3
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1085.5 628 85.2
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1083.9 628 84.9
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1082.4 646 85.0
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 4.7e-312 1073.9 628 83.8
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 3.9e-309 1064.3 582 89.5
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 1.1e-298 1029.6 631 79.7
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 1.4e-290 1002.7 632 77.8
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 9.4e-287 989.9 540 91.1
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 1.5e-284 982.6 534 90.8
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 4.8e-283 977.6 534 89.9
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 4.1e-274 948.0 541 89.3
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 2.3e-269 932.2 644 74.4
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 4.0e-269 931.4 647 73.0
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 1.7e-264 916.0 629 72.5
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 2.2e-259 899.0 644 71.4
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 4.9e-251 871.3 503 87.1
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 1.4e-250 869.8 503 87.1
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 2.7e-249 865.5 633 73.1
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 4.1e-242 841.6 637 71.1
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 1.5e-231 806.6 638 64.7
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 7.3e-231 804.3 497 80.1
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 5.4e-226 788.1 665 60.5
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 5.1e-208 728.4 444 82.7
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 2.2e-195 686.4 533 68.9
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 6.3e-182 641.7 641 52.9
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.3e-179 634.0 446 74.0
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 6.1e-177 625.2 354 87.6
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.4e-168 597.4 410 75.6
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 1.0e-160 571.2 314 90.4
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 1.3e-150 537.7 300 90.0
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 6.0e-140 502.3 275 90.2
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 7.3e-114 415.6 527 43.1
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 1.4e-96 358.2 200 87.5
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 2.1e-89 334.3 239 71.1
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 3.8e-86 323.6 186 86.6
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 3.9e-83 313.5 231 69.3
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 5.5e-77 293.1 635 35.0
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 2.1e-76 291.2 163 86.5
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 7.4e-74 282.7 195 74.9
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 1.4e-59 235.3 273 50.5
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 1.3e-54 218.8 244 52.9
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 1.2e-44 185.7 104 88.5
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 9.8e-42 176.0 106 81.1
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 2.2e-41 174.9 99 87.9
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 3.1e-40 171.0 104 78.8
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 2.0e-39 168.3 166 59.0
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 6.6e-38 163.3 86 87.2
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 4.3e-37 160.6 90 88.9
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 5.2e-35 153.7 91 84.6
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 1.5e-34 152.1 172 53.5
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 1.7e-33 148.7 125 60.8
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 7.0e-32 143.3 74 86.5
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 4.3e-21 107.5 116 53.4
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 2.8e-20 104.8 53 94.3
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 3.4e-18 97.8 60 80.0
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 3.7e-17 94.4 63 68.3
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 8.3e-17 93.2 70 62.9
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 2.4e-16 91.7 49 85.7
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 4.1e-16 90.9 51 82.4
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 3.6e-12 77.8 56 64.3
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 2.9e-09 68.2 43 74.4


User provided reference genes

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