Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G002100 Prunus persica HOM05D000181 ORTHO05D336187 2.0e-58 229.2 139 100.0
Prupe.3G061400 Prunus persica HOM05D000181 ORTHO05D008575 1.3e-22 110.2 57 93.0
MD09G1206000 Malus domestica HOM05D000181 ORTHO05D008575 1.1e-19 100.5 57 84.2
FAN02G2536 Fragaria x ananassa HOM05D000181 ORTHO05D008575 4.4e-18 95.1 57 80.7
RcHm_v2.0_Chr2g0140041 Rosa chinensis HOM05D000181 ORTHO05D008575 9.9e-18 94.0 57 80.7
FvH4_6g32150 Fragaria vesca HOM05D000181 ORTHO05D008575 6.4e-17 91.3 56 78.6
FAN14G4410 Fragaria x ananassa HOM05D000181 ORTHO05D008575 6.4e-17 91.3 56 78.6
FAN05G1720 Fragaria x ananassa HOM05D000181 ORTHO05D008575 1.4e-16 90.1 57 77.2
CANSAT56G0902 Cannabis sativa HOM05D000181 ORTHO05D008575 1.9e-16 89.7 57 73.7
FAN09G0786 Fragaria x ananassa HOM05D000181 ORTHO05D008575 2.1e-15 86.3 57 75.4
Dinv12493 Davidia involucrata HOM05D000181 ORTHO05D008575 3.0e-14 82.4 57 66.7
Eucgr.D02583 Eucalyptus grandis HOM05D000181 ORTHO05D008575 5.1e-14 81.6 57 61.4
Nitab4.5_0003039g0070 Nicotiana tabacum HOM05D000181 ORTHO05D008575 6.6e-14 81.3 57 64.9
QL05p020644 Quercus lobata HOM05D000181 ORTHO05D008575 6.6e-14 81.3 57 68.4
AT3G16290 Arabidopsis thaliana HOM05D000181 ORTHO05D008575 1.5e-13 80.1 57 64.9
AL3G29030 Arabidopsis lyrata HOM05D000181 ORTHO05D008575 3.3e-13 79.0 57 63.2
Aa31LG8G3440 Aethionema arabicum HOM05D000181 ORTHO05D008575 4.3e-13 78.6 57 63.2
Nitab4.5_0003909g0010 Nicotiana tabacum HOM05D000181 ORTHO05D008575 4.3e-13 78.6 57 63.2
Solyc12g044400.3 Solanum lycopersicum HOM05D000181 ORTHO05D008575 4.3e-13 78.6 57 63.2
Sopen12g022670 Solanum pennellii HOM05D000181 ORTHO05D008575 4.3e-13 78.6 57 63.2
PGSC0003DMG400026452 Solanum tuberosum HOM05D000181 ORTHO05D008575 4.3e-13 78.6 57 63.2
BcaC05g28897 Brassica carinata HOM05D000181 ORTHO05D008575 5.6e-13 78.2 57 64.9
C05p50220 Brassica napus HOM05D000181 ORTHO05D008575 5.6e-13 78.2 57 64.9
BolC5t33772H Brassica oleracea HOM05D000181 ORTHO05D008575 5.6e-13 78.2 57 64.9
Hund06652 Selenicereus undatus HOM05D000181 ORTHO05D008575 5.6e-13 78.2 57 63.2
CSS0004299 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D008575 7.3e-13 77.8 59 66.1
Nn2g11617 Nelumbo nucifera HOM05D000181 ORTHO05D008575 7.3e-13 77.8 57 64.9
BcaB06g25720 Brassica carinata HOM05D000181 ORTHO05D008575 9.6e-13 77.4 57 61.4
CARHR091500 Cardamine hirsuta HOM05D000181 ORTHO05D008575 9.6e-13 77.4 57 61.4
Thhalv10020028m.g Eutrema salsugineum HOM05D000181 ORTHO05D008575 9.6e-13 77.4 57 63.2
MELO3C024457.2 Cucumis melo HOM05D000181 ORTHO05D008575 1.3e-12 77.0 57 66.7
Gohir.A02G118800 Gossypium hirsutum HOM05D000181 ORTHO05D008575 1.3e-12 77.0 57 57.9
Gohir.D03G059400 Gossypium hirsutum HOM05D000181 ORTHO05D008575 1.6e-12 76.6 57 56.1
Gorai.003G063400 Gossypium raimondii HOM05D000181 ORTHO05D008575 1.6e-12 76.6 57 56.1
Hma1.2p1_1056F.1_g252680 Hydrangea macrophylla HOM05D000181 ORTHO05D008575 1.6e-12 76.6 57 61.4
Sp3g14660 Schrenkiella parvula HOM05D000181 ORTHO05D008575 1.6e-12 76.6 57 63.2
TWI18G0540 Tripterygium wilfordii HOM05D000181 ORTHO05D008575 2.1e-12 76.3 57 57.9
CSS0017490 Camellia sinensis var. sinensis HOM05D000181 ORTHO05D008575 2.8e-12 75.9 58 65.5
GSVIVG01017029001 Vitis vinifera HOM05D000181 ORTHO05D008575 2.8e-12 75.9 60 61.7
CAN.G144.16 Capsicum annuum HOM05D000181 ORTHO05D008575 3.6e-12 75.5 56 60.7
COL.COLO4_30485 Corchorus olitorius HOM05D000181 ORTHO05D008575 3.6e-12 75.5 57 56.1
Haze_15820 Corylus avellana HOM05D000181 ORTHO05D008575 3.6e-12 75.5 57 61.4
PSO832G1282 Papaver somniferum HOM05D000181 ORTHO05D008575 3.6e-12 75.5 57 64.9
Peaxi162Scf00034g00312 Petunia axillaris HOM05D000181 ORTHO05D008575 3.6e-12 75.5 60 61.7
Thecc.06G097300 Theobroma cacao HOM05D000181 ORTHO05D008575 3.6e-12 75.5 57 57.9
Cfa003671 Carpinus fangiana HOM05D000181 ORTHO05D008575 6.2e-12 74.7 57 63.2
THA.LOC104817967 Tarenaya hassleriana HOM05D000181 ORTHO05D008575 8.1e-12 74.3 57 61.4
Sed0006712 Sechium edule HOM05D000181 ORTHO05D008575 1.1e-11 73.9 57 63.2
EL10Ac9g22103 Beta vulgaris HOM05D000181 ORTHO05D008575 1.4e-11 73.6 53 62.3
Lj9A511G45 Lonicera japonica HOM05D000181 ORTHO05D008575 1.4e-11 73.6 57 59.6
PSO173G0181 Papaver somniferum HOM05D000181 ORTHO05D008575 1.4e-11 73.6 57 63.2
Potri.003G050600 Populus trichocarpa HOM05D000181 ORTHO05D008575 1.4e-11 73.6 57 61.4
Sabra03G0028300 Salix brachista HOM05D000181 ORTHO05D008575 1.4e-11 73.6 57 61.4
Duzib235G0087 Durio zibethinus HOM05D000181 ORTHO05D008575 1.8e-11 73.2 57 56.1
Lsat_1_v5_gn_4_99881 Lactuca sativa HOM05D000181 ORTHO05D008575 1.8e-11 73.2 58 62.1
ClCG09G000030 Citrullus lanatus HOM05D000181 ORTHO05D008575 3.1e-11 72.4 57 64.9
arahy.Tifrunner.gnm1.ann1.34YIIN Arachis hypogaea HOM05D000181 ORTHO05D008575 4.0e-11 72.0 57 56.1
arahy.Tifrunner.gnm1.ann1.K5ELC5 Arachis hypogaea HOM05D000181 ORTHO05D008575 4.0e-11 72.0 57 54.4
CiPaw.01G233000 Carya illinoinensis HOM05D000181 ORTHO05D008575 4.0e-11 72.0 58 63.8
Phvul.005G167100 Phaseolus vulgaris HOM05D000181 ORTHO05D008575 4.0e-11 72.0 57 54.4
A05p33230 Brassica napus HOM05D000181 ORTHO05D008575 5.3e-11 71.6 57 57.9
BraA05t22148Z Brassica rapa HOM05D000181 ORTHO05D008575 5.3e-11 71.6 57 59.6
Lj3g0006443 Lotus japonicus HOM05D000181 ORTHO05D008575 5.3e-11 71.6 57 56.1
MSTRG.9480 Avicennia marina HOM05D000181 ORTHO05D008575 6.9e-11 71.2 59 57.6
AUR62031883 Chenopodium quinoa HOM05D000181 ORTHO05D008575 9.0e-11 70.9 57 57.9
Lalb_Chr24g0396101 Lupinus albus HOM05D000181 ORTHO05D008575 9.0e-11 70.9 56 55.4
Sc15g0001980 Simmondsia chinensis HOM05D000181 ORTHO05D008575 1.2e-10 70.5 57 57.9
TAR624G1089 Trochodendron aralioides HOM05D000181 ORTHO05D008575 1.2e-10 70.5 57 56.1
AUR62022180 Chenopodium quinoa HOM05D000181 ORTHO05D008575 1.5e-10 70.1 57 57.9
VMungo1080G1473 Vigna mungo HOM05D000181 ORTHO05D008575 1.5e-10 70.1 57 52.6
Ciclev10024860m.g Citrus clementina HOM05D000181 ORTHO05D008575 2.0e-10 69.7 57 56.1
Atru.chr1.3496 Acer truncatum HOM05D000181 ORTHO05D008575 4.4e-10 68.6 57 54.4
PGR102G3096 Punica granatum HOM05D000181 ORTHO05D008575 4.4e-10 68.6 57 56.1
ATR0705G164 Amborella trichopoda HOM05D000181 ORTHO05D008575 5.8e-10 68.2 56 55.4
CDE02G1661 Ceratophyllum demersum HOM05D000181 ORTHO05D008575 7.6e-10 67.8 56 53.6
Glyma.15G018800 Glycine max HOM05D000181 ORTHO05D008575 9.9e-10 67.4 56 53.6
Psat5g297120 Pisum sativum HOM05D000181 ORTHO05D008575 9.9e-10 67.4 57 56.1
Aqoxy7G01471 Aquilegia oxysepala HOM05D000181 ORTHO05D008575 1.3e-09 67.0 57 50.9
Glyma.13G355400 Glycine max HOM05D000181 ORTHO05D008575 1.3e-09 67.0 56 51.8
Prupe.3G065400 Prunus persica HOM05D000181 ORTHO05D008575 1.7e-09 66.6 57 63.2
Ca_01156_v3 Cicer arietinum L. HOM05D000181 ORTHO05D008575 2.2e-09 66.2 57 52.6
HanXRQChr16g0501241 Helianthus annuus HOM05D000181 ORTHO05D008575 2.2e-09 66.2 58 58.6
Medtr2g101290 Medicago truncatula HOM05D000181 ORTHO05D008575 4.9e-09 65.1 57 50.9
ECA232G1272 Erigeron canadensis HOM05D000181 ORTHO05D008575 1.1e-08 63.9 59 54.2
SalBow1G1633 Salvia bowleyana HOM05D000181 ORTHO05D008575 1.1e-08 63.9 57 45.6
SalBow2G0704 Salvia bowleyana HOM05D000181 ORTHO05D008575 1.1e-08 63.9 57 45.6
Migut.I00912 Erythranthe guttata HOM05D000181 ORTHO05D008575 1.4e-08 63.5 57 45.6
Oeu063939.2 Olea europaea HOM05D000181 ORTHO05D008575 1.9e-08 63.2 57 49.1
TPR.G37177 Trifolium pratense HOM05D000181 ORTHO05D008575 1.9e-08 63.2 57 49.1
HPP92_021370 Vanilla planifolia HOM05D000181 ORTHO05D008575 3.2e-08 62.4 56 51.8
Manes.11G035200 Manihot esculenta HOM05D000181 ORTHO05D008575 5.4e-08 61.6 56 50.0
DCAR_026344 Daucus carota HOM05D000181 ORTHO05D008575 1.2e-07 60.5 53 49.1
unitig_85.g27213 Utricularia gibba HOM05D000181 ORTHO05D008575 1.2e-07 60.5 57 49.1
SEGI_09696 Sequoiadendron giganteum HOM05D000181 ORTHO05D008575 5.1e-06 55.1 55 47.3


User provided reference genes

Program Settings