Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G242200 Prunus persica HOM05D007345 ORTHO05D009277 3.0e-149 531.9 295 100.0
MD06G1238300 Malus domestica HOM05D007345 ORTHO05D009277 1.3e-91 340.5 241 76.3
RcHm_v2.0_Chr7g0177311 Rosa chinensis HOM05D007345 ORTHO05D009277 2.0e-84 316.6 229 74.7
FAN18G3356 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.3e-80 303.9 229 72.1
FAN08G2921 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.7e-80 303.5 229 72.1
FAN04G1809 Fragaria x ananassa HOM05D007345 ORTHO05D009277 1.5e-79 300.4 252 66.7
FvH4_5g18270 Fragaria vesca HOM05D007345 ORTHO05D009277 1.7e-75 287.0 219 71.2
Cfa017791 Carpinus fangiana HOM05D007345 ORTHO05D009277 1.0e-72 277.7 259 61.0
Haze_18424 Corylus avellana HOM05D007345 ORTHO05D009277 3.6e-70 269.2 219 66.2
CiPaw.16G072000 Carya illinoinensis HOM05D007345 ORTHO05D009277 1.2e-68 264.2 240 62.9
Atru.chr9.353 Acer truncatum HOM05D007345 ORTHO05D009277 6.4e-67 258.5 238 60.5
Sed0020487 Sechium edule HOM05D007345 ORTHO05D009277 4.2e-66 255.8 234 59.8
Thecc.03G072800 Theobroma cacao HOM05D007345 ORTHO05D009277 7.1e-66 255.0 238 60.5
Ca_17167_v3 Cicer arietinum L. HOM05D007345 ORTHO05D009277 1.2e-65 254.2 233 60.5
GSVIVG01029370001 Vitis vinifera HOM05D007345 ORTHO05D009277 1.6e-65 253.8 230 60.4
CANSAT01G1136 Cannabis sativa HOM05D007345 ORTHO05D009277 2.7e-65 253.1 226 62.4
Ciclev10021617m.g Citrus clementina HOM05D007345 ORTHO05D009277 2.7e-65 253.1 241 58.9
Glyma.05G249000 Glycine max HOM05D007345 ORTHO05D009277 7.9e-65 251.5 228 61.4
CsaV3_1G005120 Cucumis sativus L. HOM05D007345 ORTHO05D009277 5.1e-64 248.8 253 55.7
TAR485G0005 Trochodendron aralioides HOM05D007345 ORTHO05D009277 8.7e-64 248.1 232 57.3
TWI60G0762 Tripterygium wilfordii HOM05D007345 ORTHO05D009277 1.1e-63 247.7 251 56.2
TAR629G2718 Trochodendron aralioides HOM05D007345 ORTHO05D009277 1.9e-63 246.9 232 57.3
Cpa.g.sc111.41 Carica papaya HOM05D007345 ORTHO05D009277 3.3e-63 246.1 251 57.0
TAR629G0192 Trochodendron aralioides HOM05D007345 ORTHO05D009277 3.3e-63 246.1 232 57.3
arahy.Tifrunner.gnm1.ann1.TRXD5D Arachis hypogaea HOM05D007345 ORTHO05D009277 5.6e-63 245.4 225 59.1
arahy.Tifrunner.gnm1.ann1.X12NHK Arachis hypogaea HOM05D007345 ORTHO05D009277 5.6e-63 245.4 225 59.1
LjContig00484g0026271 Lotus japonicus HOM05D007345 ORTHO05D009277 1.3e-62 244.2 233 58.8
Medtr3g015440 Medicago truncatula HOM05D007345 ORTHO05D009277 8.1e-62 241.5 232 57.8
Phvul.002G333600 Phaseolus vulgaris HOM05D007345 ORTHO05D009277 1.4e-61 240.7 233 57.9
CSS0049327 Camellia sinensis var. sinensis HOM05D007345 ORTHO05D009277 1.8e-61 240.4 249 55.4
COL.COLO4_05810 Corchorus olitorius HOM05D007345 ORTHO05D009277 1.2e-60 237.7 233 58.4
ClCG04G012580 Citrullus lanatus HOM05D007345 ORTHO05D009277 2.0e-60 236.9 272 52.2
Potri.015G029700 Populus trichocarpa HOM05D007345 ORTHO05D009277 2.6e-60 236.5 235 56.2
Dinv13291 Davidia involucrata HOM05D007345 ORTHO05D009277 3.4e-60 236.1 254 52.8
Carub.0003s1739 Capsella rubella HOM05D007345 ORTHO05D009277 5.8e-60 235.3 227 56.4
Eucgr.H00620 Eucalyptus grandis HOM05D007345 ORTHO05D009277 5.8e-60 235.3 238 52.5
EL10Ac8g19438 Beta vulgaris HOM05D007345 ORTHO05D009277 2.9e-59 233.0 231 54.5
Actinidia35146 Actinidia chinensis HOM05D007345 ORTHO05D009277 3.8e-59 232.6 233 54.5
Aqoxy3G04287 Aquilegia oxysepala HOM05D007345 ORTHO05D009277 8.4e-59 231.5 245 53.1
Hma1.2p1_0403F.1_g145230 Hydrangea macrophylla HOM05D007345 ORTHO05D009277 1.1e-58 231.1 233 54.9
PGR083G0906 Punica granatum HOM05D007345 ORTHO05D009277 1.4e-58 230.7 252 51.6
Nitab4.5_0000782g0230 Nicotiana tabacum HOM05D000001 ORTHO05D000003 9.3e-58 228.0 250 51.2
Cc00_g18760 Coffea canephora HOM05D007345 ORTHO05D009277 1.2e-57 227.6 252 50.8
AUR62033076 Chenopodium quinoa HOM05D007345 ORTHO05D009277 1.6e-57 227.3 233 54.1
AT3G17670 Arabidopsis thaliana HOM05D007345 ORTHO05D009277 2.1e-57 226.9 227 54.6
Nitab4.5_0004612g0070 Nicotiana tabacum HOM05D000066 ORTHO05D000003 2.1e-57 226.9 233 53.2
Solyc03g098440.4 Solanum lycopersicum HOM05D007345 ORTHO05D009277 2.1e-57 226.9 251 52.2
CARHR093010 Cardamine hirsuta HOM05D007345 ORTHO05D009277 4.6e-57 225.7 227 53.3
Lalb_Chr09g0330151 Lupinus albus HOM05D007345 ORTHO05D009277 4.6e-57 225.7 244 53.3
Sc10g0008500 Simmondsia chinensis HOM05D007345 ORTHO05D009277 4.6e-57 225.7 224 54.9
CAN.G1909.2 Capsicum annuum HOM05D007345 ORTHO05D009277 6.0e-57 225.3 242 51.2
Sp3g15810 Schrenkiella parvula HOM05D007345 ORTHO05D009277 6.0e-57 225.3 226 54.0
AL3G30780 Arabidopsis lyrata HOM05D007345 ORTHO05D009277 7.9e-57 224.9 227 54.6
Lj5A166T75 Lonicera japonica HOM05D007345 ORTHO05D009277 7.9e-57 224.9 216 56.5
Migut.D02059 Erythranthe guttata HOM05D007345 ORTHO05D009277 1.3e-56 224.2 231 52.8
Sopen03g029180 Solanum pennellii HOM05D007345 ORTHO05D009277 1.3e-56 224.2 251 51.4
Rhsim12G0136700 Rhododendron simsii HOM05D007345 ORTHO05D009277 2.3e-56 223.4 216 57.9
A05p32180 Brassica napus HOM05D007345 ORTHO05D009277 3.9e-56 222.6 225 52.9
BraA05t22048Z Brassica rapa HOM05D007345 ORTHO05D009277 3.9e-56 222.6 225 52.9
Aa31LG8G4530 Aethionema arabicum HOM05D007345 ORTHO05D009277 8.7e-56 221.5 226 53.1
C05p48720 Brassica napus HOM05D007345 ORTHO05D009277 8.7e-56 221.5 225 52.0
BolC5t33608H Brassica oleracea HOM05D007345 ORTHO05D009277 8.7e-56 221.5 225 52.0
HanXRQChr13g0409411 Helianthus annuus HOM05D007345 ORTHO05D009277 8.7e-56 221.5 230 52.6
Peaxi162Scf00171g00331 Petunia axillaris HOM05D007345 ORTHO05D009277 8.7e-56 221.5 242 52.1
Sabra15G0024900 Salix brachista HOM05D007345 ORTHO05D009277 3.3e-55 219.5 219 54.3
BcaB06g25825 Brassica carinata HOM05D007345 ORTHO05D009277 9.6e-55 218.0 225 52.0
Thhalv10021436m.g Eutrema salsugineum HOM05D007345 ORTHO05D009277 1.6e-54 217.2 226 52.7
Oeu061194.1 Olea europaea HOM05D007345 ORTHO05D009277 4.8e-54 215.7 250 50.0
PSO782G0509 Papaver somniferum HOM05D007345 ORTHO05D009277 1.4e-53 214.2 258 46.9
VMungo0251G1758 Vigna mungo HOM05D007345 ORTHO05D009277 5.3e-53 212.2 242 53.3
CDE05G0430 Ceratophyllum demersum HOM05D007345 ORTHO05D009277 1.5e-52 210.7 224 50.9
AUR62034041 Chenopodium quinoa HOM05D007345 ORTHO05D009277 1.0e-51 208.0 236 50.0
Lsat_1_v5_gn_3_108980 Lactuca sativa HOM05D007345 ORTHO05D009277 1.0e-51 208.0 233 49.4
SGA_v2.0_scaffold164G38118 Striga asiatica HOM05D007345 ORTHO05D009277 8.4e-51 204.9 246 49.6
FAN13G2172 Fragaria x ananassa HOM05D007345 ORTHO05D009277 3.2e-50 203.0 164 69.5
Manes.02G214200 Manihot esculenta HOM05D007345 ORTHO05D009277 5.5e-50 202.2 234 47.9
SalBow1G0799 Salvia bowleyana HOM05D007345 ORTHO05D009277 5.5e-50 202.2 257 45.5
unitig_0.g26 Utricularia gibba HOM05D007345 ORTHO05D009277 9.7e-47 191.4 238 43.3
HPP92_025754 Vanilla planifolia HOM05D007345 ORTHO05D009277 5.3e-45 185.7 228 45.2
HPP92_025712 Vanilla planifolia HOM05D007345 ORTHO05D009277 1.5e-44 184.1 228 45.2
PGSC0003DMG400010180 Solanum tuberosum HOM05D007345 ORTHO05D009277 2.6e-44 183.3 345 37.4
Nn4g24918 Nelumbo nucifera HOM05D007345 ORTHO05D009277 8.5e-43 178.3 182 53.3
DCAR_023255 Daucus carota HOM05D007345 ORTHO05D009277 2.1e-41 173.7 203 48.3
Mapoly0014s0070 Marchantia polymorpha HOM05D007345 ORTHO05D009277 4.6e-41 172.6 224 44.2
ECA240G0690 Erigeron canadensis HOM05D007345 ORTHO05D009277 8.8e-40 168.3 192 51.0
Ah.09g231730 Amaranthus hybridus HOM05D007345 ORTHO05D009277 2.5e-39 166.8 218 44.5
Os04g0674100 Oryza sativa ssp. japonica HOM05D007345 ORTHO05D009277 2.5e-39 166.8 252 40.9
ATR0618G142 Amborella trichopoda HOM05D007345 ORTHO05D009277 4.3e-39 166.0 227 44.1
Zm00001eb066530 Zea mays HOM05D007345 ORTHO05D009277 4.3e-39 166.0 235 43.0
Pp3c11_25980 Physcomitrium patens HOM05D007345 ORTHO05D009277 6.9e-37 158.7 233 40.3
CBR_g52222 Chara braunii HOM05D007345 ORTHO05D009277 2.5e-34 150.2 232 38.4
SMO352G0035 Selaginella moellendorffii HOM05D007345 ORTHO05D009277 5.5e-34 149.1 225 40.0
MELO3C001950.2 Cucumis melo HOM05D007345 ORTHO05D009277 3.0e-32 143.3 168 51.2
vmacro16392 Vaccinium macrocarpon HOM05D007345 ORTHO05D009277 3.0e-32 143.3 433 28.2
Psat7g000360 Pisum sativum HOM05D007345 ORTHO05D009277 1.1e-31 141.4 161 50.9
PSO063G1698 Papaver somniferum HOM05D007345 ORTHO05D009277 3.7e-30 136.3 257 36.6
CAN.G1635.20 Capsicum annuum HOM05D007345 ORTHO05D009277 4.1e-29 132.9 238 38.2
AagrBONN_evm.TU.Sc2ySwM_117.2683 Anthoceros agrestis HOM05D007345 ORTHO05D009277 3.5e-28 129.8 183 42.6
SEGI_13495 Sequoiadendron giganteum HOM05D007345 ORTHO05D009277 2.2e-27 127.1 198 42.9
Lj9C350T12 Lonicera japonica HOM05D000001 ORTHO05D009373 7.2e-26 122.1 170 45.9
Eucgr.H00622 Eucalyptus grandis HOM05D007345 ORTHO05D009277 3.9e-24 116.3 90 58.9
Zm00001eb184330 Zea mays HOM05D007345 ORTHO05D009277 4.1e-21 106.3 131 42.7
MSTRG.9709 Avicennia marina HOM05D007345 ORTHO05D009277 5.5e-18 95.9 152 42.8
Cre16.g674534 Chlamydomonas reinhardtii HOM05D007345 ORTHO05D009277 1.8e-16 90.9 218 31.2
Hund22393 Selenicereus undatus HOM05D007345 ORTHO05D009277 2.7e-09 67.0 50 64.0
PRCOL_00001636 Prasinoderma coloniale HOM05D007345 ORTHO05D009277 3.6e-09 66.6 51 56.9
QL93p0107_0053 Quercus lobata HOM05D002462 ORTHO05D007680 1.7e-06 57.8 141 31.9
ECA238G4657 Erigeron canadensis HOM05D006295 ORTHO05D008061 3.7e-06 56.6 107 34.6


User provided reference genes

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