Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G233900 Prunus persica HOM05D004162 ORTHO05D004543 8.7e-226 786.6 378 100.0
MD06G1227400 Malus domestica HOM05D004162 ORTHO05D004543 1.2e-169 600.1 376 76.6
MD13G1006200 Malus domestica HOM05D004162 ORTHO05D004543 9.2e-167 590.5 383 75.5
RcHm_v2.0_Chr7g0178331 Rosa chinensis HOM05D004162 ORTHO05D004543 5.8e-129 464.9 379 58.3
FvH4_6g53500 Fragaria vesca HOM05D004162 ORTHO05D004543 4.6e-126 455.3 382 58.1
FAN14G2905 Fragaria x ananassa HOM05D004162 ORTHO05D004543 4.6e-126 455.3 382 58.1
FAN09G1804 Fragaria x ananassa HOM05D004162 ORTHO05D004543 3.9e-125 452.2 382 57.9
QL10p029785 Quercus lobata HOM05D004162 ORTHO05D004543 5.1e-125 451.8 382 59.2
FAN05G0184 Fragaria x ananassa HOM05D004162 ORTHO05D004543 1.1e-124 450.7 382 57.9
FAN02G1371 Fragaria x ananassa HOM05D004162 ORTHO05D004543 6.2e-123 444.9 383 57.2
Manes.06G005900 Manihot esculenta HOM05D004162 ORTHO05D004543 3.4e-121 439.1 382 57.1
Cfa019653 Carpinus fangiana HOM05D004162 ORTHO05D004543 1.9e-119 433.3 381 57.0
CiPaw.15G143600 Carya illinoinensis HOM05D004162 ORTHO05D004543 5.4e-119 431.8 381 58.8
Ciclev10008209m.g Citrus clementina HOM05D004162 ORTHO05D004543 2.1e-118 429.9 380 56.6
Haze_18859 Corylus avellana HOM05D004162 ORTHO05D004543 7.9e-118 427.9 381 56.7
GSVIVG01008445001 Vitis vinifera HOM05D004162 ORTHO05D004543 6.7e-117 424.9 384 57.3
Dinv08781 Davidia involucrata HOM05D004162 ORTHO05D004543 1.5e-116 423.7 382 56.0
Atru.chr9.1725 Acer truncatum HOM05D004162 ORTHO05D004543 1.9e-116 423.3 384 56.8
FAN02G2531 Fragaria x ananassa HOM05D004162 ORTHO05D004543 5.6e-116 421.8 383 55.4
Atru.chr9.1709 Acer truncatum HOM05D004162 ORTHO05D004543 1.4e-114 417.2 384 56.2
Lj5C158G4 Lonicera japonica HOM05D004162 ORTHO05D004543 2.4e-114 416.4 385 54.8
TAR371G1103 Trochodendron aralioides HOM05D004162 ORTHO05D004543 5.8e-113 411.8 384 55.5
TWI81G0681 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 3.2e-111 406.0 384 53.4
Eucgr.B00998 Eucalyptus grandis HOM05D004162 ORTHO05D004543 9.3e-111 404.4 384 54.9
Cc04_g06230 Coffea canephora HOM05D004162 ORTHO05D004543 2.3e-109 399.8 382 52.1
CSS0046385 Camellia sinensis var. sinensis HOM05D004162 ORTHO05D004543 5.6e-108 395.2 384 52.1
Hma1.2p1_3150F.1_g333200 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 1.3e-107 394.0 381 52.2
Thecc.03G055600 Theobroma cacao HOM05D004162 ORTHO05D004543 3.7e-107 392.5 378 53.2
CANSAT80G1525 Cannabis sativa HOM05D004162 ORTHO05D004543 1.8e-106 390.2 383 51.4
CANSAT54G2092 Cannabis sativa HOM05D004162 ORTHO05D004543 1.5e-105 387.1 383 52.0
Duzib205G1017 Durio zibethinus HOM05D004162 ORTHO05D004543 6.5e-104 381.7 380 52.6
Nn4g24245 Nelumbo nucifera HOM05D004162 ORTHO05D004543 5.5e-103 378.6 385 51.9
EL10Ac4g08358 Beta vulgaris HOM05D004162 ORTHO05D004543 2.1e-102 376.7 403 49.4
ClCG04G010610 Citrullus lanatus HOM05D004162 ORTHO05D004543 4.6e-102 375.6 382 52.1
Sed0019203 Sechium edule HOM05D004162 ORTHO05D004543 4.6e-102 375.6 381 50.7
Lalb_Chr05g0221631 Lupinus albus HOM05D004162 ORTHO05D004543 6.0e-102 375.2 382 52.1
Migut.D01539 Erythranthe guttata HOM05D004162 ORTHO05D004543 3.9e-101 372.5 380 50.8
Ah.04g164220 Amaranthus hybridus HOM05D004162 ORTHO05D004543 6.7e-101 371.7 382 51.6
SGA_v2.0_scaffold172G39016 Striga asiatica HOM05D004162 ORTHO05D004543 8.7e-101 371.3 386 51.6
Psat4g000200 Pisum sativum HOM05D004162 ORTHO05D004543 4.3e-100 369.0 391 50.9
SalBow3G1690 Salvia bowleyana HOM05D004162 ORTHO05D004543 4.8e-99 365.5 385 49.9
SalBow3G1953 Salvia bowleyana HOM05D004162 ORTHO05D004543 4.8e-99 365.5 385 49.9
MSTRG.9305 Avicennia marina HOM05D004162 ORTHO05D004543 1.1e-98 364.4 386 51.0
COL.COLO4_05717 Corchorus olitorius HOM05D004162 ORTHO05D004543 2.4e-98 363.2 381 49.9
Oeu046631.1 Olea europaea HOM05D004162 ORTHO05D004543 3.1e-98 362.8 385 51.4
TAR636G2328 Trochodendron aralioides HOM05D004162 ORTHO05D004543 4.1e-98 362.5 387 49.6
CsaV3_1G007180 Cucumis sativus L. HOM05D004162 ORTHO05D004543 2.6e-97 359.8 382 50.8
ECA238G4801 Erigeron canadensis HOM05D004162 ORTHO05D004543 1.3e-96 357.5 385 49.9
HanXRQChr14g0447361 Helianthus annuus HOM05D004162 ORTHO05D004543 1.3e-96 357.5 383 48.6
Sopen02g019390 Solanum pennellii HOM05D004162 ORTHO05D004543 1.7e-96 357.1 384 48.4
Solyc02g070300.4 Solanum lycopersicum HOM05D004162 ORTHO05D004543 6.5e-96 355.1 384 48.2
PGSC0003DMG400021171 Solanum tuberosum HOM05D004162 ORTHO05D004543 5.5e-95 352.1 381 47.5
DCAR_003065 Daucus carota HOM05D004162 ORTHO05D004543 2.1e-94 350.1 381 48.0
CAN.G660.38 Capsicum annuum HOM05D004162 ORTHO05D004543 2.7e-94 349.7 381 47.5
PGR083G0911 Punica granatum HOM05D004162 ORTHO05D004543 6.1e-94 348.6 382 49.5
Peaxi162Scf00050g02313 Petunia axillaris HOM05D004162 ORTHO05D004543 1.0e-93 347.8 383 46.2
Aqoxy6G00116 Aquilegia oxysepala HOM05D004162 ORTHO05D004543 2.3e-93 346.7 385 48.1
Gohir.D12G193100 Gossypium hirsutum HOM05D004162 ORTHO05D004543 2.3e-93 346.7 380 48.4
Gorai.008G207900 Gossypium raimondii HOM05D004162 ORTHO05D004543 2.3e-93 346.7 380 48.4
MBI08_g04930_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 2.3e-93 346.7 363 47.9
Gohir.A12G191000 Gossypium hirsutum HOM05D004162 ORTHO05D004543 1.9e-92 343.6 380 48.4
Glyma.08G054800 Glycine max HOM05D004162 ORTHO05D004543 1.6e-91 340.5 381 48.0
Nn3g21925 Nelumbo nucifera HOM05D004162 ORTHO05D004543 8.2e-91 338.2 388 45.6
Gohir.D07G078300 Gossypium hirsutum HOM05D004162 ORTHO05D004543 3.1e-90 336.3 383 48.0
Gorai.001G082700 Gossypium raimondii HOM05D004162 ORTHO05D004543 1.2e-89 334.3 383 48.0
Medtr8g107380 Medicago truncatula HOM05D004162 ORTHO05D004543 2.6e-89 333.2 386 48.2
MELO3C002134.2 Cucumis melo HOM05D004162 ORTHO05D004543 1.0e-88 331.3 381 49.3
Glyma.05G246600 Glycine max HOM05D004162 ORTHO05D004543 2.5e-87 326.6 381 45.4
MBI07_g11051_MAGBIO Magnolia biondii HOM05D004162 ORTHO05D004543 2.5e-87 326.6 383 45.7
Ca_17185_v3 Cicer arietinum L. HOM05D004162 ORTHO05D004543 9.4e-87 324.7 391 47.3
Phvul.002G330500 Phaseolus vulgaris HOM05D004162 ORTHO05D004543 6.7e-85 318.5 314 54.1
Lsat_1_v5_gn_2_63961 Lactuca sativa HOM05D004162 ORTHO05D004543 4.8e-83 312.4 381 43.6
VMungo0251G2472 Vigna mungo HOM05D004162 ORTHO05D004543 6.3e-83 312.0 376 44.9
unitig_22.g6151 Utricularia gibba HOM05D004162 ORTHO05D004543 2.1e-78 297.0 386 42.0
Nitab4.5_0000869g0150 Nicotiana tabacum HOM05D004162 ORTHO05D004543 7.4e-76 288.5 403 41.4
arahy.Tifrunner.gnm1.ann1.681ID1 Arachis hypogaea HOM05D004162 ORTHO05D004543 1.7e-75 287.3 378 41.3
PSO210G3845 Papaver somniferum HOM05D004162 ORTHO05D004543 6.3e-75 285.4 442 40.7
Peaxi162Scf00420g00077 Petunia axillaris HOM05D004162 ORTHO05D004543 2.4e-74 283.5 407 41.3
arahy.Tifrunner.gnm1.ann1.B7AHJA Arachis hypogaea HOM05D004162 ORTHO05D004543 5.3e-74 282.3 378 40.5
Rhsim08G0126500 Rhododendron simsii HOM05D004162 ORTHO05D004543 5.3e-74 282.3 268 55.6
arahy.Tifrunner.gnm1.ann1.7MCX13 Arachis hypogaea HOM05D004162 ORTHO05D004543 7.0e-74 282.0 382 40.1
Aqoxy7G03636 Aquilegia oxysepala HOM05D000527 ORTHO05D004543 4.5e-73 279.3 397 41.3
Nitab4.5_0005963g0070 Nicotiana tabacum HOM05D004162 ORTHO05D004543 6.5e-72 275.4 385 41.6
Ciclev10005180m.g Citrus clementina HOM05D004162 ORTHO05D004543 4.0e-69 266.2 383 39.9
Haze_09240 Corylus avellana HOM05D004162 ORTHO05D004543 5.2e-69 265.8 375 41.1
Oeu011444.1 Olea europaea HOM05D004162 ORTHO05D004543 5.2e-69 265.8 381 41.5
Aa31LG5G17260 Aethionema arabicum HOM05D004162 ORTHO05D004543 1.2e-68 264.6 387 40.6
AUR62037555 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.5e-68 264.2 338 44.4
Cfa011869 Carpinus fangiana HOM05D004162 ORTHO05D004543 4.4e-68 262.7 376 41.2
BolC9t59794H Brassica oleracea HOM05D004162 ORTHO05D004543 5.7e-68 262.3 374 40.6
TWI75G0727 Tripterygium wilfordii HOM05D004162 ORTHO05D004543 1.3e-67 261.2 385 39.5
Actinidia07535 Actinidia chinensis HOM05D004162 ORTHO05D004543 1.7e-67 260.8 382 39.5
Potri.012G046400 Populus trichocarpa HOM05D004162 ORTHO05D004543 2.8e-67 260.0 238 54.6
THA.LOC104812555 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 2.8e-67 260.0 382 41.6
Nitab4.5_0001756g0030 Nicotiana tabacum HOM05D004162 ORTHO05D004543 4.8e-67 259.2 342 40.4
SHI19078 Sapria himalayana HOM05D004162 ORTHO05D004543 4.5e-65 252.7 269 52.4
BraA10t45047Z Brassica rapa HOM05D004162 ORTHO05D004543 2.2e-64 250.4 376 40.4
AL6G16350 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 2.9e-64 250.0 364 40.7
C09p70490 Brassica napus HOM05D004162 ORTHO05D004543 6.5e-64 248.8 374 40.1
Carub.0006s0520 Capsella rubella HOM05D004162 ORTHO05D004543 1.9e-63 247.3 363 39.1
THA.LOC104810218 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.9e-63 247.3 395 37.7
THA.LOC104826807 Tarenaya hassleriana HOM05D004162 ORTHO05D004543 1.9e-63 247.3 395 37.7
Cc07_g00810 Coffea canephora HOM05D004162 ORTHO05D004543 4.2e-63 246.1 382 38.2
A10p30070 Brassica napus HOM05D004162 ORTHO05D004543 5.5e-63 245.7 373 40.2
CDE11G0199 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 7.2e-63 245.4 314 43.6
Sp6g36540 Schrenkiella parvula HOM05D004162 ORTHO05D004543 7.2e-63 245.4 373 39.9
PSO339G4834 Papaver somniferum HOM05D004162 ORTHO05D004543 1.2e-62 244.6 385 39.0
ATR0594G087 Amborella trichopoda HOM05D004162 ORTHO05D004543 2.1e-62 243.8 400 37.5
HPP92_005364 Vanilla planifolia HOM05D004162 ORTHO05D004543 2.7e-62 243.4 390 38.7
AT5G06310 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 3.6e-62 243.0 363 39.9
PSO513G0134 Papaver somniferum HOM05D004162 ORTHO05D004543 8.0e-62 241.9 385 38.2
Thhalv10028628m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 1.4e-61 241.1 388 37.9
CARHR207050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 8.8e-61 238.4 374 39.6
Sp6g08970 Schrenkiella parvula HOM05D004162 ORTHO05D004543 1.2e-60 238.0 388 38.9
AT2G05210 Arabidopsis thaliana HOM05D004162 ORTHO05D004543 1.5e-60 237.7 391 38.4
Thhalv10013532m.g Eutrema salsugineum HOM05D004162 ORTHO05D004543 2.0e-60 237.3 373 39.1
Atru.chr1.59 Acer truncatum HOM05D004162 ORTHO05D004543 3.4e-60 236.5 361 38.5
VMungo0251G0610 Vigna mungo HOM05D004162 ORTHO05D004543 9.8e-60 235.0 381 39.6
CARHR103050 Cardamine hirsuta HOM05D004162 ORTHO05D004543 3.7e-59 233.0 399 39.1
AL3G42790 Arabidopsis lyrata HOM05D004162 ORTHO05D004543 6.3e-59 232.3 390 38.2
vmacro09753 Vaccinium macrocarpon HOM05D004162 ORTHO05D004543 9.1e-58 228.4 315 42.5
PSO832G0101 Papaver somniferum HOM05D004162 ORTHO05D004543 2.0e-57 227.3 375 38.4
Rhsim02G0000200 Rhododendron simsii HOM05D004162 ORTHO05D004543 2.7e-57 226.9 311 42.4
Hma1.2p1_0013F.1_g007880 Hydrangea macrophylla HOM05D004162 ORTHO05D004543 3.5e-57 226.5 306 42.2
Sc04g0004810 Simmondsia chinensis HOM05D004162 ORTHO05D004543 1.0e-56 224.9 316 41.8
Zm00001eb433700 Zea mays HOM05D004162 ORTHO05D004543 3.6e-54 216.5 371 35.8
Gohir.A07G073600 Gossypium hirsutum HOM05D004162 ORTHO05D004543 6.8e-53 212.2 240 45.4
Lj4g0021249 Lotus japonicus HOM05D002609 ORTHO05D002820 1.3e-51 208.0 204 50.0
BcaB07g30993 Brassica carinata HOM05D004162 ORTHO05D004543 8.3e-51 205.3 392 36.5
BolC9t55513H Brassica oleracea HOM05D004162 ORTHO05D004543 1.1e-50 204.9 377 35.3
BcaC04g21892 Brassica carinata HOM05D004162 ORTHO05D004543 3.1e-50 203.4 377 36.1
C09p26100 Brassica napus HOM05D004162 ORTHO05D004543 3.1e-50 203.4 377 36.1
BcaC06g32364 Brassica carinata HOM05D004162 ORTHO05D004543 4.1e-50 203.0 374 37.2
TPR.G1445 Trifolium pratense HOM05D004162 ORTHO05D004543 4.1e-50 203.0 300 43.0
BraA09t37672Z Brassica rapa HOM05D004162 ORTHO05D004543 5.9e-49 199.1 377 35.3
A09p20680 Brassica napus HOM05D004162 ORTHO05D004543 7.8e-49 198.7 377 35.3
CANSAT78G2305 Cannabis sativa HOM05D004162 ORTHO05D004543 4.3e-47 193.0 380 36.3
Mapoly0002s0230 Marchantia polymorpha HOM05D004162 ORTHO05D004543 4.3e-47 193.0 397 34.8
Pp3c18_21900 Physcomitrium patens HOM05D004162 ORTHO05D004543 4.3e-47 193.0 412 33.0
Cfa023195 Carpinus fangiana HOM05D004162 ORTHO05D004543 2.1e-46 190.7 305 38.4
CDE02G0891 Ceratophyllum demersum HOM05D004162 ORTHO05D004543 6.4e-43 179.1 202 47.0
AagrBONN_evm.TU.Sc2ySwM_228.478 Anthoceros agrestis HOM05D004162 ORTHO05D004543 4.1e-42 176.4 396 33.8
Dinv27223 Davidia involucrata HOM05D004162 ORTHO05D004543 5.4e-42 176.0 215 42.8
unitig_90.g27442 Utricularia gibba HOM05D004162 ORTHO05D004543 3.3e-39 166.8 373 31.6
CiPaw.09G010800 Carya illinoinensis HOM05D004162 ORTHO05D004543 1.5e-36 157.9 207 44.0
Carub.0003s2670 Capsella rubella HOM05D004162 ORTHO05D004543 2.4e-34 150.6 272 37.9
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 1.2e-33 148.3 406 30.8
AUR62019586 Chenopodium quinoa HOM05D004162 ORTHO05D004543 1.7e-32 144.4 143 53.1
AUR62013945 Chenopodium quinoa HOM05D004162 ORTHO05D004543 4.4e-28 129.8 140 49.3
SEGI_33776 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 3.5e-17 93.6 129 39.5
SEGI_28626 Sequoiadendron giganteum HOM05D004162 ORTHO05D004543 6.2e-14 82.8 136 37.5
Haze_09935 Corylus avellana HOM05D001513 ORTHO05D004543 2.4e-13 80.9 55 67.3
QL10p030172 Quercus lobata HOM05D004162 ORTHO05D004543 1.2e-12 78.6 64 54.7
VMungo0464G1157 Vigna mungo HOM05D004162 ORTHO05D004543 1.3e-11 75.1 115 45.2
VMungo0464G1805 Vigna mungo HOM05D004162 ORTHO05D004543 5.4e-10 69.7 115 43.5
Hund17739 Selenicereus undatus HOM05D004162 ORTHO05D004543 7.1e-10 69.3 62 50.0
FAN18G4048 Fragaria x ananassa HOM05D026708 ORTHO05D004543 2.1e-09 67.8 118 39.8
MCO05G023 Micromonas commoda HOM05D004162 ORTHO05D004543 3.5e-09 67.0 415 22.4
CBR_g32246 Chara braunii HOM05D004162 ORTHO05D004543 3.0e-08 63.9 115 33.0
HPP92_005316 Vanilla planifolia HOM05D004162 ORTHO05D004543 5.6e-07 59.7 110 32.7
SHI19079 Sapria himalayana HOM05D004162 ORTHO05D004543 6.2e-06 56.2 64 39.1


User provided reference genes

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