Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 0.0e+00 1704.5 931 100.0
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1413.7 971 82.1
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1391.3 971 81.9
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 0.0e+00 1232.6 959 70.4
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1213.4 965 72.7
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 0.0e+00 1206.8 975 68.4
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1179.1 974 70.4
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 0.0e+00 1177.5 971 70.2
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 0.0e+00 1175.6 948 72.2
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1175.2 974 70.1
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1170.2 933 71.9
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 0.0e+00 1167.9 1056 63.4
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 0.0e+00 1163.3 911 72.0
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 0.0e+00 1155.2 954 67.9
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 0.0e+00 1154.8 975 66.3
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 0.0e+00 1154.8 972 65.9
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 0.0e+00 1151.3 972 65.8
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 0.0e+00 1141.7 964 67.3
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 0.0e+00 1137.9 963 64.1
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 0.0e+00 1135.2 975 65.5
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 0.0e+00 1118.2 979 62.9
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 0.0e+00 1107.0 977 64.6
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 0.0e+00 1106.3 913 69.2
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 0.0e+00 1102.8 976 67.2
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1099.7 972 63.9
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 0.0e+00 1093.2 960 65.1
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1091.6 972 63.4
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 0.0e+00 1091.6 963 66.5
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 0.0e+00 1090.9 956 67.3
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1090.5 965 66.0
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 0.0e+00 1090.1 968 64.9
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 0.0e+00 1083.9 877 66.8
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 0.0e+00 1082.8 974 61.9
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1082.8 964 63.4
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 0.0e+00 1080.1 967 63.1
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 0.0e+00 1079.7 951 63.6
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1075.5 969 65.8
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 6.4e-312 1074.7 967 63.3
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 1.9e-311 1072.4 999 64.4
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 2.2e-310 1068.9 882 65.6
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 2.0e-308 1062.4 963 64.7
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 1.0e-307 1060.1 910 64.3
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 1.7e-307 1059.3 908 69.2
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 8.5e-307 1057.0 975 63.8
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 1.2e-305 1053.1 965 65.3
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 3.6e-305 1051.6 945 62.8
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 8.8e-304 1047.0 912 63.9
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 9.7e-303 1043.5 980 63.7
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 1.3e-302 1043.1 912 63.5
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 1.3e-302 1043.1 970 62.5
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 2.2e-302 1042.3 988 64.1
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 6.3e-302 1040.8 978 61.2
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 1.0e-299 1033.5 999 60.2
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 1.3e-299 1033.1 986 61.3
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 1.9e-298 1029.2 969 63.0
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 2.5e-298 1028.9 948 63.6
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 1.2e-297 1026.5 971 62.4
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 4.7e-297 1024.6 944 60.7
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 2.0e-295 1019.2 956 58.9
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 5.7e-295 1017.7 988 59.3
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 1.6e-292 1009.6 974 61.7
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 2.2e-291 1005.7 969 62.0
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 5.0e-291 1004.6 966 57.5
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 6.5e-291 1004.2 967 60.0
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 2.5e-290 1002.3 957 60.5
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 4.7e-289 998.0 995 58.3
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 8.0e-289 997.3 994 58.7
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 5.2e-288 994.6 957 62.3
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 4.4e-287 991.5 971 59.4
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 2.2e-286 989.2 991 58.6
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 3.7e-286 988.4 972 61.9
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 9.1e-285 983.8 906 61.3
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 1.6e-284 983.0 979 60.9
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 1.0e-283 980.3 969 60.6
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 2.3e-283 979.2 932 63.2
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 1.5e-282 976.5 965 62.3
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 2.1e-273 946.0 965 56.3
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 3.7e-270 935.3 910 61.1
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 1.9e-266 922.9 936 56.6
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 5.4e-261 904.8 977 54.7
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 1.5e-258 896.7 840 61.7
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 2.5e-258 896.0 957 55.4
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 3.3e-250 869.0 968 54.4
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 1.8e-248 863.2 985 54.7
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 2.0e-247 859.8 976 55.8
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 2.0e-247 859.8 976 55.8
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 1.4e-245 853.6 978 55.5
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 2.4e-245 852.8 968 55.8
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 1.0e-243 847.4 977 55.1
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 1.7e-243 846.7 975 55.9
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 6.6e-243 844.7 995 52.1
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 3.1e-240 835.9 839 59.7
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 1.7e-238 830.1 974 54.0
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 4.2e-237 825.5 975 54.1
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 1.0e-235 820.8 975 53.3
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 1.3e-235 820.5 976 53.6
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 3.9e-235 818.9 974 53.5
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 6.6e-235 818.1 976 53.5
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 1.2e-231 807.4 973 53.0
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 2.1e-220 770.0 822 54.6
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 5.7e-210 735.3 777 55.1
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 3.6e-196 689.5 973 45.3
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 1.8e-171 607.4 848 46.1
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 3.4e-170 603.2 564 66.0
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 6.6e-158 562.4 930 43.8
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 6.4e-145 519.2 509 58.0
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 3.0e-142 510.4 842 42.9
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 8.1e-124 449.1 820 36.3
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 1.9e-112 411.4 547 45.0
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 9.3e-104 382.5 455 49.7
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 2.0e-82 311.6 862 29.7
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 8.5e-81 306.2 382 51.0
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 2.6e-74 284.6 783 29.1
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 2.0e-61 241.9 879 25.6
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 2.6e-61 241.5 246 52.8
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 4.1e-59 234.2 482 38.0
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 9.1e-59 233.0 244 50.8
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 3.9e-41 174.5 110 76.4
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 2.2e-28 132.1 395 33.4
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 1.9e-24 119.0 83 68.7
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 4.0e-22 111.3 67 76.1
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 3.9e-17 94.7 66 69.7
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 9.6e-16 90.1 111 51.4
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 1.8e-14 85.9 157 37.6
Hma1.2p1_0733F.1_g210250 Hydrangea macrophylla HOM05D005717 ORTHO05D007221 3.9e-09 68.2 154 37.7
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.9e-08 65.9 37 83.8
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 4.3e-08 64.7 43 67.4
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 5.6e-08 64.3 43 67.4
MBI15_g28715_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 3.1e-06 58.5 39 71.8


User provided reference genes

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