Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G189200 Prunus persica HOM05D003823 ORTHO05D004866 2.0e-109 399.1 191 100.0
FvH4_5g15250 Fragaria vesca HOM05D003823 ORTHO05D004866 1.3e-108 396.4 191 99.0
FAN04G0558 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.3e-108 396.4 191 99.0
FAN08G0194 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.3e-108 396.4 191 99.0
FAN13G2005 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.3e-108 396.4 191 99.0
FAN18G4237 Fragaria x ananassa HOM05D003823 ORTHO05D004866 1.3e-108 396.4 191 99.0
RcHm_v2.0_Chr7g0180841 Rosa chinensis HOM05D003823 ORTHO05D004866 1.1e-107 393.3 192 99.0
MD06G1190100 Malus domestica HOM05D003823 ORTHO05D004866 7.0e-107 390.6 192 97.9
MD14G1197000 Malus domestica HOM05D003823 ORTHO05D004866 7.0e-107 390.6 192 97.9
Glyma.02G268600 Glycine max HOM05D003823 ORTHO05D004866 1.6e-106 389.4 191 95.8
VMungo0647G1166 Vigna mungo HOM05D003823 ORTHO05D004866 2.0e-106 389.0 191 95.3
Phvul.008G213700 Phaseolus vulgaris HOM05D003823 ORTHO05D004866 2.7e-106 388.7 191 94.8
Cfa018968 Carpinus fangiana HOM05D000046 ORTHO05D004866 3.5e-106 388.3 192 96.9
Cpa.g.sc388.5 Carica papaya HOM05D003823 ORTHO05D004866 5.9e-106 387.5 191 95.3
Ca_16285_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 1.7e-105 386.0 191 94.8
Hund02662 Selenicereus undatus HOM05D003823 ORTHO05D004866 1.7e-105 386.0 192 94.8
Ciclev10022411m.g Citrus clementina HOM05D003823 ORTHO05D004866 3.9e-105 384.8 191 95.3
Glyma.14G048800 Glycine max HOM05D003823 ORTHO05D004866 3.9e-105 384.8 191 94.8
CANSAT80G0583 Cannabis sativa HOM05D003823 ORTHO05D004866 5.0e-105 384.4 193 95.3
EL10Ac8g19266 Beta vulgaris HOM05D003823 ORTHO05D004866 6.6e-105 384.0 191 94.2
Cc04_g17180 Coffea canephora HOM05D003823 ORTHO05D004866 6.6e-105 384.0 192 95.8
AUR62027457 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.1e-104 383.3 191 94.2
AUR62031242 Chenopodium quinoa HOM05D003823 ORTHO05D004866 1.1e-104 383.3 191 94.2
Potri.001G354000 Populus trichocarpa HOM05D003823 ORTHO05D004866 1.9e-104 382.5 192 95.3
CiPaw.11G041500 Carya illinoinensis HOM05D003823 ORTHO05D004866 2.5e-104 382.1 187 96.3
Medtr3g080480 Medicago truncatula HOM05D003823 ORTHO05D004866 3.3e-104 381.7 191 94.2
Psat5g111480 Pisum sativum HOM05D003823 ORTHO05D004866 3.3e-104 381.7 191 94.2
Potri.011G077900 Populus trichocarpa HOM05D003823 ORTHO05D004866 7.3e-104 380.6 192 94.3
TWI60G1055 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 7.3e-104 380.6 185 96.8
TWI81G0804 Tripterygium wilfordii HOM05D003823 ORTHO05D004866 7.3e-104 380.6 185 96.8
MBI02_g36598_MAGBIO Magnolia biondii HOM05D003823 ORTHO05D004866 1.2e-103 379.8 191 93.2
Sabra16G0232900 Salix brachista HOM05D003823 ORTHO05D004866 1.2e-103 379.8 192 94.3
TPR.G29042 Trifolium pratense HOM05D003823 ORTHO05D004866 1.2e-103 379.8 191 94.2
ClCG06G016300 Citrullus lanatus HOM05D003823 ORTHO05D004866 2.1e-103 379.0 191 94.8
MELO3C017163.2 Cucumis melo HOM05D003823 ORTHO05D004866 2.1e-103 379.0 191 94.8
CsaV3_1G002230 Cucumis sativus L. HOM05D003823 ORTHO05D004866 2.1e-103 379.0 191 94.8
Nn8g40950 Nelumbo nucifera HOM05D003823 ORTHO05D004866 2.1e-103 379.0 192 93.8
PGR083G1126 Punica granatum HOM05D003823 ORTHO05D004866 2.1e-103 379.0 191 95.3
Actinidia37644 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.8e-103 378.6 191 93.7
Duzib084G0821 Durio zibethinus HOM05D003823 ORTHO05D004866 3.6e-103 378.3 191 94.8
Lalb_Chr25g0280071 Lupinus albus HOM05D003823 ORTHO05D004866 3.6e-103 378.3 189 94.7
QL10p016165 Quercus lobata HOM05D003823 ORTHO05D004866 3.6e-103 378.3 186 95.7
Peaxi162Scf00009g00217 Petunia axillaris HOM05D003823 ORTHO05D004866 4.7e-103 377.9 184 97.8
Gohir.A11G029891 Gossypium hirsutum HOM05D003823 ORTHO05D004866 6.2e-103 377.5 192 94.8
Dinv38684 Davidia involucrata HOM05D003823 ORTHO05D004866 1.0e-102 376.7 186 95.7
Manes.14G076100 Manihot esculenta HOM05D003823 ORTHO05D004866 1.0e-102 376.7 192 94.3
Nn4g23085 Nelumbo nucifera HOM05D003823 ORTHO05D004866 1.0e-102 376.7 192 93.2
Sed0017565 Sechium edule HOM05D003823 ORTHO05D004866 1.0e-102 376.7 186 95.7
Nitab4.5_0000785g0070 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.4e-102 376.3 188 95.2
Nitab4.5_0010010g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 1.4e-102 376.3 188 95.2
Sc12g0006240 Simmondsia chinensis HOM05D003823 ORTHO05D004866 1.8e-102 375.9 184 96.2
Thecc.03G082400 Theobroma cacao HOM05D003823 ORTHO05D004866 1.8e-102 375.9 192 94.8
Psat2g025840 Pisum sativum HOM05D003823 ORTHO05D004866 2.3e-102 375.6 186 94.6
Ca_06062_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 3.1e-102 375.2 186 95.2
Ca_30714_v3 Cicer arietinum L. HOM05D003823 ORTHO05D004866 3.1e-102 375.2 186 95.2
Gohir.D11G033300 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.1e-102 375.2 192 94.3
Gorai.007G036100 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.1e-102 375.2 192 94.3
Medtr5g085380 Medicago truncatula HOM05D003823 ORTHO05D004866 5.2e-102 374.4 186 94.1
TPR.G25673 Trifolium pratense HOM05D003823 ORTHO05D004866 5.2e-102 374.4 186 94.1
Oeu022626.1 Olea europaea HOM05D003823 ORTHO05D004866 8.9e-102 373.6 188 93.1
Zm00001eb203950 Zea mays HOM05D003823 ORTHO05D004866 8.9e-102 373.6 187 93.6
Gohir.A12G166100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.2e-101 373.2 191 91.6
SalBow6G5762 Salvia bowleyana HOM05D003823 ORTHO05D004866 1.2e-101 373.2 188 93.1
Solyc03g113020.3 Solanum lycopersicum HOM05D003823 ORTHO05D004866 1.2e-101 373.2 184 95.7
Sopen03g032100 Solanum pennellii HOM05D003823 ORTHO05D004866 1.2e-101 373.2 184 95.7
THA.LOC104819434 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 1.5e-101 372.9 191 91.6
GSVIVG01020043001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.5e-101 372.9 191 91.6
Migut.D02333 Erythranthe guttata HOM05D003823 ORTHO05D004866 2.0e-101 372.5 184 94.6
Os02g0265400 Oryza sativa ssp. japonica HOM05D003823 ORTHO05D004866 2.0e-101 372.5 188 92.6
PSO017G2864 Papaver somniferum HOM05D003823 ORTHO05D004866 2.0e-101 372.5 189 93.1
PGSC0003DMG400018144 Solanum tuberosum HOM05D003823 ORTHO05D004866 2.0e-101 372.5 184 95.7
Lj4g0027914 Lotus japonicus HOM05D003823 ORTHO05D004866 2.6e-101 372.1 186 93.5
CAN.G1305.7 Capsicum annuum HOM05D003823 ORTHO05D004866 3.4e-101 371.7 188 93.1
Duzib268G0082 Durio zibethinus HOM05D003823 ORTHO05D004866 4.4e-101 371.3 191 90.6
PSO478G3470 Papaver somniferum HOM05D003823 ORTHO05D004866 5.8e-101 370.9 189 92.6
Duzib251G0021 Durio zibethinus HOM05D003823 ORTHO05D004866 7.5e-101 370.5 191 91.1
Eucgr.K02462 Eucalyptus grandis HOM05D003823 ORTHO05D004866 7.5e-101 370.5 211 86.7
ATR0564G299 Amborella trichopoda HOM05D003823 ORTHO05D004866 9.8e-101 370.2 187 93.6
TAR374G1522 Trochodendron aralioides HOM05D003823 ORTHO05D004866 9.8e-101 370.2 193 91.7
MSTRG.9636 Avicennia marina HOM05D003823 ORTHO05D004866 1.3e-100 369.8 183 95.1
TAR622G1107 Trochodendron aralioides HOM05D003823 ORTHO05D004866 1.3e-100 369.8 187 92.5
Actinidia02709 Actinidia chinensis HOM05D003823 ORTHO05D004866 2.2e-100 369.0 193 90.7
COL.COLO4_22965 Corchorus olitorius HOM05D003823 ORTHO05D004866 2.2e-100 369.0 191 89.0
Gohir.D12G169500 Gossypium hirsutum HOM05D003823 ORTHO05D004866 2.2e-100 369.0 191 91.6
Cc07_g03190 Coffea canephora HOM05D003823 ORTHO05D004866 2.9e-100 368.6 193 90.7
Rhsim08G0157700 Rhododendron simsii HOM05D003823 ORTHO05D004866 2.9e-100 368.6 191 91.6
Sed0002791 Sechium edule HOM05D003823 ORTHO05D004866 2.9e-100 368.6 184 94.0
BcaB01g00874 Brassica carinata HOM05D003823 ORTHO05D004866 3.7e-100 368.2 189 91.0
Gorai.008G182100 Gossypium raimondii HOM05D003823 ORTHO05D004866 3.7e-100 368.2 191 91.6
Lsat_1_v5_gn_2_88881 Lactuca sativa HOM05D003823 ORTHO05D004866 4.9e-100 367.9 186 92.5
Manes.05G098825 Manihot esculenta HOM05D003823 ORTHO05D004866 4.9e-100 367.9 191 90.1
THA.LOC104821437 Tarenaya hassleriana HOM05D003823 ORTHO05D004866 4.9e-100 367.9 189 91.0
vmacro18202 Vaccinium macrocarpon HOM05D003823 ORTHO05D004866 4.9e-100 367.9 189 92.1
Aqoxy3G03322 Aquilegia oxysepala HOM05D003823 ORTHO05D004866 6.4e-100 367.5 191 91.6
A06p19840 Brassica napus HOM05D003823 ORTHO05D004866 6.4e-100 367.5 189 91.0
BraA06t25064Z Brassica rapa HOM05D003823 ORTHO05D004866 6.4e-100 367.5 189 91.0
ECA238G0538 Erigeron canadensis HOM05D003823 ORTHO05D004866 6.4e-100 367.5 186 91.4
BcaC01g01774 Brassica carinata HOM05D003823 ORTHO05D004866 8.3e-100 367.1 189 90.5
C03p72020 Brassica napus HOM05D003823 ORTHO05D004866 8.3e-100 367.1 189 90.5
BolC3t19499H Brassica oleracea HOM05D003823 ORTHO05D004866 8.3e-100 367.1 189 90.5
Dinv19933 Davidia involucrata HOM05D003823 ORTHO05D004866 8.3e-100 367.1 192 92.2
HanXRQChr02g0056361 Helianthus annuus HOM05D003823 ORTHO05D004866 8.3e-100 367.1 186 91.9
HanXRQChr14g0449901 Helianthus annuus HOM05D003823 ORTHO05D004866 8.3e-100 367.1 186 91.4
Dinv06526 Davidia involucrata HOM05D003823 ORTHO05D004866 1.1e-99 366.7 186 91.4
Thecc.02G351700 Theobroma cacao HOM05D003823 ORTHO05D004866 1.1e-99 366.7 191 89.0
Sp5g14150 Schrenkiella parvula HOM05D003823 ORTHO05D004866 1.4e-99 366.3 189 90.5
CARHR156490 Cardamine hirsuta HOM05D003823 ORTHO05D004866 1.9e-99 365.9 189 89.9
CSS0041610 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 2.4e-99 365.5 193 90.2
Migut.D02334 Erythranthe guttata HOM05D003823 ORTHO05D004866 2.4e-99 365.5 186 92.5
Atru.chr11.1839 Acer truncatum HOM05D003823 ORTHO05D004866 3.2e-99 365.2 191 89.5
CDE02G3183 Ceratophyllum demersum HOM05D003823 ORTHO05D004866 3.2e-99 365.2 185 90.8
Thhalv10010746m.g Eutrema salsugineum HOM05D003823 ORTHO05D004866 4.1e-99 364.8 189 89.9
Ciclev10032832m.g Citrus clementina HOM05D003823 ORTHO05D004866 5.4e-99 364.4 191 89.5
A06p27290 Brassica napus HOM05D003823 ORTHO05D004866 7.0e-99 364.0 189 89.9
BraA06t25670Z Brassica rapa HOM05D003823 ORTHO05D004866 7.0e-99 364.0 189 89.9
CSS0031728 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 7.0e-99 364.0 183 92.3
CSS0049183 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 7.0e-99 364.0 183 92.3
DCAR_026066 Daucus carota HOM05D003823 ORTHO05D004866 1.6e-98 362.8 184 92.9
Aa31LG4G16460 Aethionema arabicum HOM05D003823 ORTHO05D004866 2.7e-98 362.1 189 88.4
BcaC01g02292 Brassica carinata HOM05D003823 ORTHO05D004866 2.7e-98 362.1 189 89.9
C03p66970 Brassica napus HOM05D003823 ORTHO05D004866 2.7e-98 362.1 189 89.9
BolC3t18970H Brassica oleracea HOM05D003823 ORTHO05D004866 2.7e-98 362.1 189 89.9
Oeu006179.1 Olea europaea HOM05D003823 ORTHO05D004866 3.5e-98 361.7 186 91.9
Atru.chr4.927 Acer truncatum HOM05D003823 ORTHO05D004866 6.0e-98 360.9 191 89.0
HPP92_020326 Vanilla planifolia HOM05D003823 ORTHO05D004866 1.0e-97 360.1 197 87.3
Zm00001eb237810 Zea mays HOM05D003823 ORTHO05D004866 1.3e-97 359.8 182 92.9
Rhsim08G0068000 Rhododendron simsii HOM05D003823 ORTHO05D004866 2.3e-97 359.0 201 86.6
BcaB02g10689 Brassica carinata HOM05D003823 ORTHO05D004866 6.6e-97 357.5 189 88.4
Haze_07352 Corylus avellana HOM05D003823 ORTHO05D004866 6.6e-97 357.5 258 71.7
AL5G27100 Arabidopsis lyrata HOM05D003823 ORTHO05D004866 2.5e-96 355.5 189 87.8
AT3G47810 Arabidopsis thaliana HOM05D003823 ORTHO05D004866 1.2e-95 353.2 188 87.8
Lj5A113G71 Lonicera japonica HOM05D003823 ORTHO05D004866 4.7e-95 351.3 185 89.2
Carub.0005s1392 Capsella rubella HOM05D003823 ORTHO05D004866 2.3e-94 349.0 181 90.1
Mapoly0081s0078 Marchantia polymorpha HOM05D003823 ORTHO05D004866 8.9e-94 347.1 182 86.8
SMO116G0153 Selaginella moellendorffii HOM05D003823 ORTHO05D004866 8.9e-94 347.1 189 85.2
Pp3c11_12990 Physcomitrium patens HOM05D003823 ORTHO05D004866 2.9e-92 342.0 182 87.9
CSS0031561 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 4.6e-90 334.7 186 87.6
SGA_v2.0_scaffold193G40709 Striga asiatica HOM05D003823 ORTHO05D004866 8.6e-89 330.5 191 82.7
GSVIVG01008037001 Vitis vinifera HOM05D003823 ORTHO05D004866 1.1e-88 330.1 160 96.9
CBR_g29439 Chara braunii HOM05D003823 ORTHO05D004866 2.5e-88 328.9 186 79.6
Pp3c7_13070 Physcomitrium patens HOM05D003823 ORTHO05D004866 2.8e-87 325.5 182 84.1
CSS0019545 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-82 310.1 186 80.6
CDE09G0968 Ceratophyllum demersum HOM05D005655 ORTHO05D007386 3.3e-80 302.0 152 90.1
QL93p0043_0002 Quercus lobata HOM05D003823 ORTHO05D004866 1.3e-76 290.0 142 96.5
Nitab4.5_0012727g0030 Nicotiana tabacum HOM05D003823 ORTHO05D004866 4.6e-74 281.6 140 93.6
MBI05_g00394_MAGBIO Magnolia biondii HOM05D000046 ORTHO05D000195 3.9e-73 278.5 140 90.0
SEGI_34945 Sequoiadendron giganteum HOM05D003823 ORTHO05D004866 8.7e-73 277.3 140 90.7
Actinidia17538 Actinidia chinensis HOM05D003823 ORTHO05D004866 1.7e-68 263.1 130 91.5
Eucgr.G00164 Eucalyptus grandis HOM05D003823 ORTHO05D004866 3.2e-67 258.8 136 89.0
Eucgr.G00114 Eucalyptus grandis HOM05D003823 ORTHO05D004866 1.3e-65 253.4 153 82.4
Lj4A511G17 Lonicera japonica HOM05D003823 ORTHO05D004866 1.8e-65 253.1 186 71.0
TAR729G0007 Trochodendron aralioides HOM05D003823 ORTHO05D004866 3.0e-65 252.3 165 75.8
Manes.01G188500 Manihot esculenta HOM05D003823 ORTHO05D004866 8.7e-65 250.8 128 86.7
CSS0004961 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.5e-64 250.0 194 68.0
MCO13G641 Micromonas commoda HOM05D003823 ORTHO05D004866 7.1e-59 231.1 188 54.3
Cre12.g499900 Chlamydomonas reinhardtii HOM05D003823 ORTHO05D004866 4.6e-58 228.4 187 56.7
Lj4A501G12 Lonicera japonica HOM05D003823 ORTHO05D004866 2.0e-53 213.0 166 66.9
Atru.chr9.2289 Acer truncatum HOM05D003823 ORTHO05D004866 5.1e-49 198.4 157 66.9
Gorai.007G237600 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.2e-45 187.2 90 93.3
Gohir.D02G085100 Gossypium hirsutum HOM05D003823 ORTHO05D004866 1.0e-44 184.1 115 76.5
CSS0033378 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.2e-42 177.2 90 88.9
Gohir.D06G139701 Gossypium hirsutum HOM05D003823 ORTHO05D017994 2.1e-42 176.4 87 90.8
Gohir.A08G078101 Gossypium hirsutum HOM05D003823 ORTHO05D004866 3.6e-42 175.6 103 79.6
Gorai.005G191600 Gossypium raimondii HOM05D003823 ORTHO05D004866 7.9e-42 174.5 87 89.7
Gorai.003G098000 Gossypium raimondii HOM05D003823 ORTHO05D017994 1.3e-41 173.7 87 89.7
Gorai.008G100600 Gossypium raimondii HOM05D003823 ORTHO05D004866 5.1e-41 171.8 87 89.7
Gohir.A05G198301 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.7e-41 171.0 87 88.5
Gohir.D03G122233 Gossypium hirsutum HOM05D003823 ORTHO05D004866 8.7e-41 171.0 87 88.5
Gohir.D06G082500 Gossypium hirsutum HOM05D003823 ORTHO05D017994 5.3e-38 161.8 87 87.4
Lj4g0026130 Lotus japonicus HOM05D003823 ORTHO05D004866 1.2e-37 160.6 101 79.2
CSS0038842 Camellia sinensis var. sinensis HOM05D003823 ORTHO05D004866 1.7e-36 156.8 157 54.1
Gorai.013G138400 Gossypium raimondii HOM05D003823 ORTHO05D004866 1.6e-34 150.2 79 86.1
Thecc.02G319100 Theobroma cacao HOM05D003823 ORTHO05D004866 6.1e-34 148.3 100 75.0
unitig_0.g782 Utricularia gibba HOM05D003823 ORTHO05D004866 8.8e-33 144.4 69 88.4
Sabra15G0049800 Salix brachista HOM05D003823 ORTHO05D000412 2.8e-31 139.4 70 95.7
Gohir.A01G072501 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-27 127.1 62 88.7
Gohir.A05G203200 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-27 127.1 62 88.7
Gohir.A10G203700 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-27 127.1 62 88.7
Gohir.A12G000600 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-27 127.1 62 88.7
Gohir.D06G205050 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-27 127.1 62 88.7
Gohir.D08G111400 Gossypium hirsutum HOM05D003823 ORTHO05D017994 1.4e-27 127.1 62 88.7
Sabra15G0057900 Salix brachista HOM05D003823 ORTHO05D349330 1.8e-17 93.6 51 94.1
Gorai.005G095900 Gossypium raimondii HOM05D003823 ORTHO05D218813 1.7e-15 87.0 44 90.9
Duzib248G1489 Durio zibethinus HOM05D003823 ORTHO05D186086 7.0e-14 81.6 55 74.5


User provided reference genes

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