Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 0.0e+00 1177.9 574 100.0
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 0.0e+00 1080.9 574 90.6
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 4.3e-309 1063.9 574 88.5
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 7.3e-309 1063.1 574 89.2
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 9.6e-309 1062.8 574 89.4
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 8.1e-308 1059.7 574 89.0
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 8.9e-307 1056.2 574 89.0
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 2.0e-298 1028.5 573 86.4
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 1.3e-297 1025.8 574 86.4
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 1.7e-294 1015.4 571 85.5
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 3.9e-294 1014.2 571 85.3
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 5.6e-293 1010.4 574 85.5
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 9.6e-293 1009.6 574 85.0
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 9.6e-293 1009.6 574 84.7
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 1.6e-292 1008.8 574 84.8
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 2.8e-292 1008.1 575 84.2
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 2.8e-292 1008.1 570 85.6
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 6.2e-292 1006.9 574 84.7
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 1.1e-291 1006.1 575 84.9
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.4e-291 1005.7 573 85.2
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 3.1e-291 1004.6 573 85.0
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 4.0e-291 1004.2 575 84.5
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 6.9e-291 1003.4 573 84.5
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 9.0e-291 1003.0 575 84.7
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 1.2e-290 1002.7 573 85.0
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 1.2e-290 1002.7 573 85.0
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 2.0e-290 1001.9 546 87.4
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 2.6e-290 1001.5 574 84.0
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 5.8e-290 1000.3 574 84.3
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 1.3e-289 999.2 573 84.8
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.3e-289 999.2 552 87.0
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 4.2e-288 994.2 573 83.8
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 7.1e-288 993.4 552 86.8
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 2.1e-287 991.9 575 85.0
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 2.7e-287 991.5 574 83.4
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 2.7e-287 991.5 552 86.6
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 4.6e-287 990.7 573 83.6
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 4.6e-287 990.7 553 86.3
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 1.0e-286 989.6 553 86.4
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 1.3e-286 989.2 553 85.9
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 3.0e-286 988.0 571 83.9
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 3.0e-286 988.0 573 82.7
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 5.1e-286 987.3 553 86.1
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 5.1e-286 987.3 573 82.7
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.1e-285 986.1 574 83.1
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 1.5e-285 985.7 574 83.3
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 1.5e-285 985.7 553 86.1
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 1.5e-285 985.7 573 82.4
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 7.4e-285 983.4 605 80.2
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 9.6e-285 983.0 573 82.0
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 9.6e-285 983.0 574 82.9
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 1.6e-284 982.2 553 85.5
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 1.6e-284 982.2 553 85.7
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 1.6e-284 982.2 572 83.4
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 8.1e-284 979.9 557 84.4
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 1.8e-283 978.8 553 85.7
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.8e-283 978.8 552 85.3
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 5.3e-283 977.2 574 82.4
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 6.9e-283 976.9 563 83.5
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 6.9e-283 976.9 553 85.0
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 9.0e-283 976.5 552 85.0
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 1.5e-282 975.7 572 82.3
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 3.4e-282 974.5 574 82.6
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 4.5e-282 974.2 569 82.4
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 3.8e-281 971.1 552 84.6
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 3.8e-281 971.1 552 84.6
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 4.9e-281 970.7 573 81.8
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 4.9e-281 970.7 597 79.4
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.5e-280 968.4 576 82.6
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 4.2e-280 967.6 551 84.2
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 9.3e-280 966.5 553 84.1
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.3e-278 961.8 579 81.9
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 8.7e-278 959.9 561 83.2
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 1.9e-277 958.7 574 80.7
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 2.5e-277 958.4 551 82.8
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 9.6e-277 956.4 544 84.2
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.4e-275 952.6 568 81.3
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 1.5e-274 949.1 545 82.4
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 5.8e-274 947.2 567 81.0
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 8.4e-273 943.3 551 82.6
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 1.2e-271 939.5 567 80.2
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 4.6e-271 937.6 545 81.7
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 1.3e-270 936.0 545 82.2
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 1.8e-270 935.6 565 81.8
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 3.9e-270 934.5 563 79.8
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 5.1e-270 934.1 573 78.7
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 9.7e-269 929.9 570 79.1
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 2.8e-268 928.3 552 80.6
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 6.3e-268 927.2 557 80.3
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 9.0e-267 923.3 531 84.7
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 4.5e-266 921.0 551 80.6
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 5.9e-266 920.6 574 79.6
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 7.7e-266 920.2 564 79.6
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 1.3e-265 919.5 564 79.1
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 1.9e-264 915.6 554 80.5
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.1e-256 889.8 573 77.3
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 5.1e-254 880.9 569 76.6
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 5.7e-253 877.5 552 76.1
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 4.1e-251 871.3 547 75.3
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 4.5e-250 867.8 574 74.7
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 4.2e-248 861.3 551 75.1
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 9.4e-248 860.1 542 77.1
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.6e-247 859.4 542 76.9
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 3.6e-247 858.2 552 75.0
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 2.2e-244 849.0 554 76.5
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 1.8e-243 845.9 563 75.3
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 1.2e-242 843.2 498 80.9
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 9.4e-240 833.6 553 73.4
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 6.8e-238 827.4 456 87.1
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 1.5e-237 826.2 550 73.1
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 9.8e-237 823.5 574 73.2
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 3.4e-229 798.5 508 77.0
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 1.7e-228 796.2 551 70.6
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 2.8e-223 778.9 426 87.8
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 2.3e-222 775.8 425 88.0
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 4.0e-222 775.0 558 68.5
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 4.4e-221 771.5 544 69.1
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 6.2e-215 751.1 545 68.6
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 2.0e-210 736.1 548 66.6
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 7.3e-208 727.6 550 66.2
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 1.1e-200 703.7 608 62.5
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.9e-200 703.0 542 66.1
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.9e-200 703.0 542 66.1
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 1.3e-164 583.9 331 84.3
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 3.2e-163 579.3 335 81.8
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 2.5e-160 569.7 574 55.9
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 4.5e-149 532.3 293 86.3
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 6.5e-148 528.5 548 51.6
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 3.5e-133 479.6 310 75.5
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 4.4e-128 462.6 278 80.6
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 8.0e-122 441.8 357 65.0
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 4.7e-98 362.8 199 84.9
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.2e-88 331.6 506 42.9
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.2e-69 268.5 338 44.4
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 2.7e-69 267.3 190 69.5
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 7.1e-62 242.7 133 88.7
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 1.1e-59 235.3 140 81.4
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 7.1e-54 216.1 129 79.1
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 3.5e-53 213.8 137 74.5
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.3e-50 205.3 133 76.7
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 1.3e-50 205.3 127 76.4
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 1.3e-50 205.3 127 76.4
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 1.0e-47 195.7 120 75.8
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 1.0e-47 195.7 120 75.8
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.1e-46 192.2 129 72.1
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 7.1e-46 189.5 119 74.8
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 7.1e-46 189.5 119 74.8
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 2.1e-45 188.0 110 76.4
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.3e-43 180.6 119 72.3
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 3.2e-38 164.1 96 79.2
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 8.2e-34 149.4 76 85.5
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 5.0e-31 140.2 79 83.5
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 4.8e-26 123.6 124 50.0
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 8.5e-23 112.8 86 64.0
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 4.2e-22 110.5 189 40.2
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 4.7e-21 107.1 68 72.1
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 1.4e-20 105.5 61 80.3
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 2.0e-19 101.7 63 76.2


User provided reference genes

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