Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G146600 Prunus persica HOM05D005705 ORTHO05D007152 1.6e-216 755.7 361 100.0
MD14G1151500 Malus domestica HOM05D005705 ORTHO05D007152 3.2e-177 625.2 384 78.9
MD06G1136700 Malus domestica HOM05D005705 ORTHO05D007152 4.3e-174 614.8 384 78.1
RcHm_v2.0_Chr7g0189351 Rosa chinensis HOM05D005705 ORTHO05D007152 8.2e-173 610.5 385 76.4
FAN13G0195 Fragaria x ananassa HOM05D005705 ORTHO05D007152 2.4e-172 609.0 391 74.7
FAN18G0862 Fragaria x ananassa HOM05D005705 ORTHO05D007152 2.4e-172 609.0 395 74.2
FAN08G2466 Fragaria x ananassa HOM05D005705 ORTHO05D007152 1.1e-169 600.1 398 72.9
Manes.06G123000 Manihot esculenta HOM05D005705 ORTHO05D007152 4.2e-161 571.6 385 71.7
CiPaw.11G003500 Carya illinoinensis HOM05D005705 ORTHO05D007152 1.0e-159 567.0 384 71.6
Atru.chr6.1874 Acer truncatum HOM05D005705 ORTHO05D007152 1.4e-159 566.6 390 71.5
CANSAT80G2532 Cannabis sativa HOM05D005705 ORTHO05D007152 8.8e-159 563.9 383 72.6
THA.LOC104811568 Tarenaya hassleriana HOM05D005705 ORTHO05D007152 1.5e-158 563.1 368 72.8
Nn4g22220 Nelumbo nucifera HOM05D005705 ORTHO05D007152 4.8e-157 558.1 383 69.5
Phvul.009G162600 Phaseolus vulgaris HOM05D005705 ORTHO05D007152 2.4e-156 555.8 385 70.6
Potri.015G101300 Populus trichocarpa HOM05D005705 ORTHO05D007152 5.9e-155 551.2 378 68.8
VMungo1309G0782 Vigna mungo HOM05D005705 ORTHO05D007152 7.7e-155 550.8 384 69.8
Ciclev10031733m.g Citrus clementina HOM05D005705 ORTHO05D007152 1.3e-154 550.1 368 72.3
Peaxi162Scf00516g00214 Petunia axillaris HOM05D005705 ORTHO05D007152 1.3e-154 550.1 388 69.3
Sabra15G0121700 Salix brachista HOM05D005705 ORTHO05D007152 2.9e-154 548.9 382 68.3
GSVIVG01008591001 Vitis vinifera HOM05D005705 ORTHO05D007152 3.8e-154 548.5 374 70.1
FAN04G2238 Fragaria x ananassa HOM05D005705 ORTHO05D007152 8.5e-154 547.4 427 65.1
Dinv11204 Davidia involucrata HOM05D005705 ORTHO05D007152 1.4e-153 546.6 384 70.1
Medtr3g098940 Medicago truncatula HOM05D005705 ORTHO05D007152 3.2e-153 545.4 384 70.3
Psat5g053040 Pisum sativum HOM05D005705 ORTHO05D007152 1.2e-152 543.5 385 69.6
TWI14G0152 Tripterygium wilfordii HOM05D005705 ORTHO05D007152 1.6e-152 543.1 390 66.9
Aqoxy3G01676 Aquilegia oxysepala HOM05D005705 ORTHO05D007152 2.1e-152 542.7 369 69.4
ClCG06G018130 Citrullus lanatus HOM05D005705 ORTHO05D007152 2.1e-152 542.7 379 69.7
Nitab4.5_0001332g0070 Nicotiana tabacum HOM05D005705 ORTHO05D007152 4.7e-152 541.6 387 69.3
Thecc.03G135500 Theobroma cacao HOM05D005705 ORTHO05D007152 1.0e-151 540.4 377 67.1
Lj1g0017194 Lotus japonicus HOM05D005705 ORTHO05D007152 1.4e-151 540.0 387 69.8
Lalb_Chr08g0237371 Lupinus albus HOM05D005705 ORTHO05D007152 1.4e-151 540.0 386 69.7
Glyma.06G167100 Glycine max HOM05D005705 ORTHO05D007152 1.8e-151 539.7 387 68.7
Solyc03g097550.3 Solanum lycopersicum HOM05D005705 ORTHO05D007152 3.0e-151 538.9 384 68.5
Sopen03g028300 Solanum pennellii HOM05D005705 ORTHO05D007152 8.8e-151 537.3 384 68.2
CAN.G732.1 Capsicum annuum HOM05D005705 ORTHO05D007152 1.5e-150 536.6 386 68.9
Eucgr.K02692 Eucalyptus grandis HOM05D005705 ORTHO05D007152 5.7e-150 534.6 390 68.2
CsaV3_1G000320 Cucumis sativus L. HOM05D005705 ORTHO05D007152 7.4e-150 534.3 374 69.3
Nitab4.5_0003383g0010 Nicotiana tabacum HOM05D005705 ORTHO05D007152 2.8e-149 532.3 386 68.7
Ca_16064_v3 Cicer arietinum L. HOM05D005705 ORTHO05D007152 3.7e-149 531.9 374 68.4
Migut.D01284 Erythranthe guttata HOM05D005705 ORTHO05D007152 8.2e-149 530.8 381 69.8
Gorai.003G119300 Gossypium raimondii HOM05D005705 ORTHO05D007152 1.1e-148 530.4 381 65.9
PSO017G1135 Papaver somniferum HOM05D005705 ORTHO05D007152 2.4e-148 529.3 386 68.1
Gohir.D03G113100 Gossypium hirsutum HOM05D005705 ORTHO05D007152 2.0e-147 526.2 381 65.9
Cc08_g11650 Coffea canephora HOM05D005705 ORTHO05D007152 3.5e-147 525.4 378 68.3
PSO478G3581 Papaver somniferum HOM05D005705 ORTHO05D007152 7.7e-147 524.2 386 67.6
arahy.Tifrunner.gnm1.ann1.5ZS0BP Arachis hypogaea HOM05D005705 ORTHO05D007152 6.5e-146 521.2 395 66.3
PGR044G0296 Punica granatum HOM05D005705 ORTHO05D007152 6.5e-146 521.2 385 66.2
Eucgr.B00082 Eucalyptus grandis HOM05D005705 ORTHO05D007152 7.2e-145 517.7 366 68.0
Eucgr.F01610 Eucalyptus grandis HOM05D005705 ORTHO05D007152 9.4e-145 517.3 373 66.5
Aa31LG3G7650 Aethionema arabicum HOM05D005705 ORTHO05D007152 2.1e-144 516.2 375 66.4
Thhalv10013761m.g Eutrema salsugineum HOM05D005705 ORTHO05D007152 2.1e-144 516.2 366 68.0
DCAR_026236 Daucus carota HOM05D005705 ORTHO05D007152 3.6e-144 515.4 382 67.3
A02p12470 Brassica napus HOM05D005705 ORTHO05D007152 1.8e-143 513.1 354 70.3
vmacro19145 Vaccinium macrocarpon HOM05D005705 ORTHO05D007152 2.3e-143 512.7 416 63.7
BraA02t06310Z Brassica rapa HOM05D005705 ORTHO05D007152 3.0e-143 512.3 354 70.1
HanXRQChr02g0034161 Helianthus annuus HOM05D005705 ORTHO05D007152 3.0e-143 512.3 382 65.4
Sp6g13350 Schrenkiella parvula HOM05D005705 ORTHO05D007152 4.0e-143 511.9 364 68.1
CSS0038740 Camellia sinensis var. sinensis HOM05D005705 ORTHO05D007152 5.2e-143 511.5 405 62.7
BolC2t08194H Brassica oleracea HOM05D005705 ORTHO05D007152 8.8e-143 510.8 353 70.5
arahy.Tifrunner.gnm1.ann1.U15GQW Arachis hypogaea HOM05D005705 ORTHO05D007152 2.0e-142 509.6 415 61.7
C02p20570 Brassica napus HOM05D005705 ORTHO05D007152 4.4e-142 508.4 352 70.2
CARHR256910 Cardamine hirsuta HOM05D005705 ORTHO05D007152 4.4e-142 508.4 366 66.7
C03p19170 Brassica napus HOM05D005705 ORTHO05D007152 7.5e-142 507.7 365 67.7
AL8G25400 Arabidopsis lyrata HOM05D005705 ORTHO05D007152 1.7e-141 506.5 366 65.8
BcaC01g06077 Brassica carinata HOM05D005705 ORTHO05D007152 1.7e-141 506.5 394 64.5
ECA247G0704 Erigeron canadensis HOM05D005705 ORTHO05D007152 3.7e-141 505.4 383 64.5
AT5G51140 Arabidopsis thaliana HOM05D005705 ORTHO05D007152 6.3e-141 504.6 364 65.9
BcaC01g06097 Brassica carinata HOM05D005705 ORTHO05D007152 1.1e-140 503.8 365 67.4
Carub.0008s1118 Capsella rubella HOM05D005705 ORTHO05D007152 1.4e-140 503.4 363 66.4
Lsat_1_v5_gn_1_32681 Lactuca sativa HOM05D005705 ORTHO05D007152 3.1e-140 502.3 380 65.3
TPR.G35256 Trifolium pratense HOM05D005705 ORTHO05D007152 5.3e-140 501.5 384 65.6
BcaC03g14622 Brassica carinata HOM05D005705 ORTHO05D007152 7.0e-140 501.1 344 70.3
BolC3t14305H Brassica oleracea HOM05D005705 ORTHO05D007152 2.7e-139 499.2 366 67.2
BraA03t10919Z Brassica rapa HOM05D005705 ORTHO05D007152 7.7e-139 497.7 365 67.1
A03p16280 Brassica napus HOM05D005705 ORTHO05D007152 1.0e-138 497.3 344 69.5
EL10Ac5g11353 Beta vulgaris HOM05D005705 ORTHO05D007152 1.7e-138 496.5 376 64.1
Zm00001eb241970 Zea mays HOM05D005705 ORTHO05D007152 2.5e-137 492.7 368 64.1
Eucgr.B00079 Eucalyptus grandis HOM05D005705 ORTHO05D007152 2.1e-136 489.6 352 67.6
QL10p001835 Quercus lobata HOM05D005705 ORTHO05D007152 1.0e-135 487.3 522 51.3
Rhsim08G0193700 Rhododendron simsii HOM05D005705 ORTHO05D007152 2.3e-135 486.1 346 69.7
ECA247G2912 Erigeron canadensis HOM05D005705 ORTHO05D007152 2.6e-134 482.6 375 64.3
Nn4g22223 Nelumbo nucifera HOM05D005705 ORTHO05D007152 7.7e-131 471.1 373 61.7
Gohir.A03G053840 Gossypium hirsutum HOM05D005705 ORTHO05D007152 1.7e-130 469.9 390 60.3
ATR0582G303 Amborella trichopoda HOM05D005705 ORTHO05D007152 1.9e-129 466.5 387 59.7
Haze_07188 Corylus avellana HOM05D005705 ORTHO05D007152 1.2e-128 463.8 381 61.7
Sed0013194 Sechium edule HOM05D005705 ORTHO05D007152 6.1e-128 461.5 335 67.8
TAR374G1739 Trochodendron aralioides HOM05D005705 ORTHO05D007152 1.3e-125 453.8 306 72.2
Sc22g0003610 Simmondsia chinensis HOM05D005705 ORTHO05D007152 3.7e-125 452.2 373 63.0
FvH4_5g08961 Fragaria vesca HOM05D005705 ORTHO05D007152 4.9e-125 451.8 272 79.4
Actinidia18330 Actinidia chinensis HOM05D005705 ORTHO05D007152 1.6e-120 436.8 313 69.6
Eucgr.K02697 Eucalyptus grandis HOM05D005705 ORTHO05D007152 4.7e-120 435.3 385 59.7
Lj5A92G46 Lonicera japonica HOM05D005705 ORTHO05D007152 1.0e-119 434.1 421 56.3
Oeu061128.1 Olea europaea HOM05D005705 ORTHO05D007152 1.5e-118 430.3 438 52.3
SGA_v2.0_scaffold37G14637 Striga asiatica HOM05D005705 ORTHO05D007152 1.1e-116 424.1 356 59.0
PGR083G0448 Punica granatum HOM05D005705 ORTHO05D007152 1.4e-116 423.7 362 60.2
Eucgr.K02689 Eucalyptus grandis HOM05D005705 ORTHO05D007152 4.6e-115 418.7 364 58.5
AUR62029555 Chenopodium quinoa HOM05D005705 ORTHO05D007152 1.0e-114 417.5 366 56.3
AUR62034819 Chenopodium quinoa HOM05D005705 ORTHO05D007152 2.3e-114 416.4 366 56.3
Dinv23185 Davidia involucrata HOM05D005705 ORTHO05D007152 1.1e-113 414.1 275 74.2
MELO3C026185.2 Cucumis melo HOM05D005705 ORTHO05D007152 9.5e-113 411.0 330 63.3
Duzib084G0308 Durio zibethinus HOM05D005705 ORTHO05D007152 6.2e-112 408.3 391 53.2
RcHm_v2.0_Chr7g0189401 Rosa chinensis HOM05D005705 ORTHO05D007152 1.4e-111 407.1 308 66.6
HPP92_015136 Vanilla planifolia HOM05D005705 ORTHO05D007152 4.9e-109 398.7 372 54.3
Mapoly0190s0007 Marchantia polymorpha HOM05D005705 ORTHO05D007152 4.9e-101 372.1 470 43.8
Hma1.2p1_0168F.1_g074310 Hydrangea macrophylla HOM05D005705 ORTHO05D007152 1.4e-100 370.5 362 57.2
Pp3c10_5730 Physcomitrium patens HOM05D005705 ORTHO05D007152 2.1e-99 366.7 489 40.7
Ah.11g046430 Amaranthus hybridus HOM05D005705 ORTHO05D007152 5.8e-94 348.6 415 47.0
MSTRG.4614 Avicennia marina HOM05D005705 ORTHO05D007152 1.7e-93 347.1 274 63.9
PGSC0003DMG400031733 Solanum tuberosum HOM05D005705 ORTHO05D007152 2.4e-92 343.2 229 72.5
Gohir.A03G053960 Gossypium hirsutum HOM05D005705 ORTHO05D007152 1.1e-89 334.3 228 69.3
Cpa.g.sc4.149 Carica papaya HOM05D005705 ORTHO05D007152 2.4e-76 290.0 154 84.4
Hund10107 Selenicereus undatus HOM05D005705 ORTHO05D007152 1.5e-73 280.8 319 48.6
CDE02G4520 Ceratophyllum demersum HOM05D005705 ORTHO05D007152 3.3e-65 253.1 234 56.8
MBI11_g13060_MAGBIO Magnolia biondii HOM05D005705 ORTHO05D007152 3.5e-59 233.0 135 81.5
Os02g0512300 Oryza sativa ssp. japonica HOM05D005705 ORTHO05D007152 4.6e-59 232.6 130 80.0
AagrBONN_evm.TU.Sc2ySwM_362.2453 Anthoceros agrestis HOM05D005705 ORTHO05D007152 1.7e-53 214.2 201 54.7
Cfa023901 Carpinus fangiana HOM05D005705 ORTHO05D007152 3.2e-52 209.9 402 33.1
Pp3c10_5680 Physcomitrium patens HOM05D005705 ORTHO05D007152 3.2e-52 209.9 366 35.5
Gohir.D03G113075 Gossypium hirsutum HOM05D005705 ORTHO05D007152 3.9e-50 203.0 155 61.3
Cre17.g702400 Chlamydomonas reinhardtii HOM05D005705 ORTHO05D007152 5.7e-49 199.1 310 41.3
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 2.7e-43 180.3 290 36.9
Haze_27069 Corylus avellana HOM05D005705 ORTHO05D007152 1.0e-42 178.3 268 38.8
CBR_g48327 Chara braunii HOM05D005705 ORTHO05D007152 1.7e-32 144.4 177 45.8
MCO02G106 Micromonas commoda HOM05D005705 ORTHO05D007152 3.6e-27 126.7 179 41.9
Cpa.g.sc4.148 Carica papaya HOM05D005705 ORTHO05D007152 8.8e-26 122.1 95 64.2
arahy.Tifrunner.gnm1.ann1.MH3CCF Arachis hypogaea HOM05D001440 ORTHO05D007152 5.3e-23 112.8 85 64.7
arahy.Tifrunner.gnm1.ann1.N812UT Arachis hypogaea HOM05D005705 ORTHO05D007152 5.9e-22 109.4 64 78.1
Cpa.g.sc4.145 Carica papaya HOM05D005705 ORTHO05D007152 7.7e-22 109.0 57 77.2
Eucgr.K02687 Eucalyptus grandis HOM05D005705 ORTHO05D007152 7.7e-22 109.0 96 54.2
arahy.Tifrunner.gnm1.ann1.5M4P4Y Arachis hypogaea HOM05D005705 ORTHO05D007152 8.5e-21 105.5 64 76.6
arahy.Tifrunner.gnm1.ann1.WM01PM Arachis hypogaea HOM05D001440 ORTHO05D013218 2.5e-20 104.0 65 73.8
arahy.Tifrunner.gnm1.ann1.DA2DAM Arachis hypogaea HOM05D005705 ORTHO05D007152 9.4e-20 102.1 64 75.0
Pp3s46_330 Physcomitrium patens HOM05D007020 ORTHO05D008935 7.2e-12 75.9 259 26.3
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 1.8e-10 71.2 79 53.2
MELO3C002896.2 Cucumis melo HOM05D006791 ORTHO05D008221 3.4e-09 67.0 333 25.2
Cpa.g.sc466.9 Carica papaya HOM05D006791 ORTHO05D008221 5.7e-09 66.2 336 25.0
unitig_747.g21478 Utricularia gibba HOM05D006791 ORTHO05D008221 5.7e-09 66.2 257 28.0
Zm00001eb013230 Zea mays HOM05D006791 ORTHO05D008221 1.3e-08 65.1 337 24.6
Cc02_g11450 Coffea canephora HOM05D006791 ORTHO05D008221 6.3e-08 62.8 282 25.9
CsaV3_5G025780 Cucumis sativus L. HOM05D006791 ORTHO05D008221 1.8e-07 61.2 335 25.1
QL08p056563 Quercus lobata HOM05D006791 ORTHO05D008221 2.4e-07 60.8 273 26.7
MSTRG.371 Avicennia marina HOM05D006791 ORTHO05D008221 3.1e-07 60.5 268 25.0
MCO13G347 Micromonas commoda HOM05D005705 ORTHO05D007152 3.1e-07 60.5 311 25.4
Nn2g10715 Nelumbo nucifera HOM05D006791 ORTHO05D008221 3.1e-07 60.5 343 25.7
RcHm_v2.0_Chr1g0363851 Rosa chinensis HOM05D006791 ORTHO05D008221 3.1e-07 60.5 322 25.8
Pp3c20_1270 Physcomitrium patens HOM05D006791 ORTHO05D008221 4.1e-07 60.1 313 22.7
Pp3c21_5880 Physcomitrium patens HOM05D007020 ORTHO05D008935 5.4e-07 59.7 268 22.4
Manes.07G103500 Manihot esculenta HOM05D006791 ORTHO05D008221 1.2e-06 58.5 269 24.5
TWI15G0354 Tripterygium wilfordii HOM05D006791 ORTHO05D008221 1.6e-06 58.2 249 24.1
VMungo0720G1069 Vigna mungo HOM05D006791 ORTHO05D008221 2.0e-06 57.8 277 22.0
GSVIVG01016310001 Vitis vinifera HOM05D006791 ORTHO05D008221 2.0e-06 57.8 271 26.6
MCO01G778 Micromonas commoda HOM05D007020 ORTHO05D008935 2.7e-06 57.4 264 25.0
PSO339G2849 Papaver somniferum HOM05D006791 ORTHO05D008221 2.7e-06 57.4 272 25.4
Migut.F01766 Erythranthe guttata HOM05D006791 ORTHO05D008221 4.5e-06 56.6 264 26.1
Glyma.20G178400 Glycine max HOM05D006791 ORTHO05D008221 4.5e-06 56.6 262 22.5
PSO384G4004 Papaver somniferum HOM05D006791 ORTHO05D008221 4.5e-06 56.6 272 25.4
CiPaw.01G274700 Carya illinoinensis HOM05D006791 ORTHO05D008221 5.9e-06 56.2 269 24.5
PSO170G4315 Papaver somniferum HOM05D007020 ORTHO05D008935 5.9e-06 56.2 277 21.7


User provided reference genes

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