Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 0.0e+00 1478.0 768 100.0
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 0.0e+00 1418.3 768 94.9
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1354.0 768 90.8
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1308.5 768 88.5
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1303.1 768 88.2
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1298.9 762 88.5
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 0.0e+00 1294.6 770 86.1
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 0.0e+00 1234.2 774 81.1
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 0.0e+00 1232.2 777 82.2
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 0.0e+00 1231.1 782 80.9
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 0.0e+00 1221.8 737 84.4
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 0.0e+00 1221.8 719 86.2
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 0.0e+00 1221.5 743 83.7
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1220.7 782 80.7
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 0.0e+00 1219.9 780 81.5
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 0.0e+00 1219.5 743 84.1
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 0.0e+00 1215.7 731 84.3
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 0.0e+00 1214.1 782 80.6
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 0.0e+00 1213.0 782 79.9
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 0.0e+00 1211.8 733 83.8
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 0.0e+00 1209.1 779 80.6
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 0.0e+00 1204.9 770 80.9
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 0.0e+00 1196.8 781 78.9
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 0.0e+00 1196.8 736 83.4
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 0.0e+00 1196.0 730 83.2
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 0.0e+00 1192.9 714 87.4
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 0.0e+00 1188.7 728 82.3
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 0.0e+00 1185.6 741 81.0
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 0.0e+00 1184.9 727 83.2
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 0.0e+00 1179.5 736 81.4
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1178.7 734 81.9
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 0.0e+00 1177.9 742 81.3
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 0.0e+00 1176.4 710 84.2
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 0.0e+00 1167.9 766 77.9
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 0.0e+00 1167.1 731 81.5
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 0.0e+00 1166.8 730 81.6
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 0.0e+00 1166.4 742 80.7
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 0.0e+00 1162.9 742 80.5
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 0.0e+00 1161.7 788 76.3
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 0.0e+00 1155.6 776 77.8
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1151.7 723 80.9
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 0.0e+00 1151.0 728 80.6
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 0.0e+00 1149.0 776 76.2
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 0.0e+00 1147.1 723 80.4
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 0.0e+00 1146.7 728 79.1
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 0.0e+00 1141.3 729 79.6
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 0.0e+00 1138.3 719 81.8
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 0.0e+00 1137.5 822 73.1
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 0.0e+00 1136.3 728 78.7
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1135.6 700 81.9
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 0.0e+00 1125.9 742 78.4
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 0.0e+00 1124.4 764 76.8
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1119.4 781 74.9
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 0.0e+00 1118.2 701 81.0
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 0.0e+00 1117.1 723 79.4
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 0.0e+00 1112.4 781 74.6
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 0.0e+00 1112.1 774 73.5
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 0.0e+00 1108.2 739 77.7
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1103.6 780 74.5
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 0.0e+00 1099.0 727 76.5
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 0.0e+00 1097.8 754 76.3
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1096.6 781 73.2
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 0.0e+00 1096.6 781 73.2
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 0.0e+00 1093.6 732 77.3
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 0.0e+00 1093.2 732 76.2
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 0.0e+00 1083.2 766 74.9
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 0.0e+00 1079.7 729 77.1
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 0.0e+00 1077.4 733 76.4
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 0.0e+00 1077.0 729 77.2
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 0.0e+00 1075.5 733 76.1
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 5.3e-312 1074.3 719 77.6
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 1.1e-311 1073.2 654 83.2
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 1.1e-311 1072.8 776 72.9
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 6.3e-311 1070.5 799 70.5
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 1.1e-310 1069.7 743 74.6
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 3.0e-310 1068.1 768 73.0
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 5.2e-310 1067.4 772 73.1
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 8.8e-310 1066.6 792 71.6
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 1.2e-309 1066.2 728 75.8
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 4.4e-309 1064.3 783 71.8
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 2.8e-308 1061.6 782 72.1
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 1.8e-307 1058.9 741 74.1
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 5.4e-307 1057.4 725 75.7
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 6.6e-305 1050.4 783 71.1
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 8.6e-305 1050.0 730 74.2
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 1.6e-303 1045.8 719 75.5
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 3.0e-302 1041.6 719 75.2
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 5.2e-302 1040.8 719 75.0
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 8.9e-302 1040.0 719 74.8
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 4.4e-301 1037.7 782 70.5
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 8.3e-300 1033.5 724 73.8
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 4.6e-298 1027.7 700 76.7
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 1.8e-294 1015.8 735 70.7
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 2.3e-294 1015.4 729 71.9
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 2.6e-293 1011.9 727 71.4
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 3.6e-287 991.5 732 70.9
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 1.6e-266 922.9 624 78.5
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 3.5e-250 868.6 562 78.1
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 6.0e-250 867.8 562 78.3
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 8.7e-241 837.4 757 59.0
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 1.3e-239 833.6 728 58.7
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 2.9e-236 822.4 729 58.8
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 6.7e-233 811.2 716 60.2
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.6e-226 790.0 541 68.9
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 1.0e-225 787.3 727 59.3
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 6.3e-215 751.5 531 68.2
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 1.4e-214 750.4 531 67.2
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.3e-199 700.7 552 63.2
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 3.3e-195 686.0 414 81.6
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 1.7e-180 637.1 403 80.1
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 3.1e-169 599.7 414 69.1
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 1.7e-151 540.8 343 79.3
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 3.0e-132 476.9 269 85.1
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 1.3e-106 391.7 689 36.9
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 1.4e-100 371.7 492 43.3
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 1.3e-98 365.2 620 41.8
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 2.4e-97 360.9 266 65.4
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 5.9e-96 356.3 268 69.4
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 5.2e-84 316.6 278 64.4
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 3.9e-71 273.9 351 48.7
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 1.5e-70 271.9 704 31.0
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 8.6e-47 193.0 134 75.4
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 4.2e-41 174.1 102 78.4
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 4.3e-38 164.1 83 90.4
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 3.9e-31 141.0 148 54.1
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 3.3e-30 137.9 118 60.2
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 6.7e-23 113.6 54 92.6
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 2.5e-22 111.7 133 50.4
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 3.8e-18 97.8 120 46.7
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 1.0e-15 89.7 156 36.5
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 1.5e-11 75.9 74 59.5
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 5.9e-11 73.9 41 82.9
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 7.6e-11 73.6 59 64.4
MBI06_g27478_MAGBIO Magnolia biondii HOM05D007982 ORTHO05D010255 5.5e-09 67.4 374 24.6
Gohir.D01G027900 Gossypium hirsutum HOM05D008447 ORTHO05D010638 6.1e-08 63.9 258 24.4
Gohir.A01G040200 Gossypium hirsutum HOM05D008447 ORTHO05D010638 1.8e-07 62.4 254 24.0
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.8e-07 62.4 80 47.5
Prupe.7G070400 Prunus persica HOM05D008447 ORTHO05D010638 2.3e-07 62.0 276 26.4
Pp3c10_15450 Physcomitrium patens HOM05D008447 ORTHO05D010638 3.0e-07 61.6 290 26.2
Gorai.002G037200 Gossypium raimondii HOM05D008447 ORTHO05D010638 5.1e-07 60.8 254 23.6
Mapoly0001s0484 Marchantia polymorpha HOM05D007982 ORTHO05D010255 6.7e-07 60.5 393 23.9
Gohir.D01G027950 Gossypium hirsutum HOM05D008447 ORTHO05D010638 1.5e-06 59.3 271 23.2
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 5.7e-06 57.4 80 41.2
PSO384G3680 Papaver somniferum HOM05D008447 ORTHO05D010638 9.7e-06 56.6 258 23.6


User provided reference genes

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