Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G097800 Prunus persica HOM05D001588 ORTHO05D006118 1.4e-96 356.3 186 100.0
Prupe.5G097600 Prunus persica HOM05D001588 ORTHO05D006118 3.7e-52 208.8 136 82.4
FvH4_5g02070 Fragaria vesca HOM05D001588 ORTHO05D006118 7.7e-50 201.1 137 78.1
FAN18G1170 Fragaria x ananassa HOM05D001588 ORTHO05D006118 7.7e-50 201.1 137 78.1
FAN04G2309 Fragaria x ananassa HOM05D001588 ORTHO05D006118 1.3e-49 200.3 137 78.1
FAN08G1628 Fragaria x ananassa HOM05D001588 ORTHO05D006118 2.2e-49 199.5 137 78.1
FAN13G0628 Fragaria x ananassa HOM05D001588 ORTHO05D006118 2.9e-49 199.1 137 78.1
MD06G1079200 Malus domestica HOM05D001588 ORTHO05D006118 2.9e-49 199.1 137 77.4
RcHm_v2.0_Chr7g0198231 Rosa chinensis HOM05D001588 ORTHO05D006118 6.5e-49 198.0 136 76.5
TAR629G2281 Trochodendron aralioides HOM05D001588 ORTHO05D006118 1.1e-48 197.2 137 75.2
Dinv37655 Davidia involucrata HOM05D001588 ORTHO05D006118 1.6e-47 193.4 136 75.0
CSS0014008 Camellia sinensis var. sinensis HOM05D001588 ORTHO05D006118 8.0e-47 191.0 137 73.7
Actinidia27390 Actinidia chinensis HOM05D001588 ORTHO05D006118 1.4e-46 190.3 136 72.8
Aqoxy5G04005 Aquilegia oxysepala HOM05D001588 ORTHO05D006118 1.4e-46 190.3 136 72.8
CSS0006311 Camellia sinensis var. sinensis HOM05D001588 ORTHO05D006118 1.8e-46 189.9 137 73.0
CiPaw.11G137200 Carya illinoinensis HOM05D001588 ORTHO05D006118 1.8e-46 189.9 136 72.8
Atru.chr9.2223 Acer truncatum HOM05D001588 ORTHO05D006118 3.0e-46 189.1 136 73.5
CANSAT21G1525 Cannabis sativa HOM05D001588 ORTHO05D006118 5.2e-46 188.3 137 74.5
GSVIVG01019772001 Vitis vinifera HOM05D001588 ORTHO05D006118 5.2e-46 188.3 137 73.7
CANSAT21G1717 Cannabis sativa HOM05D001588 ORTHO05D006118 6.7e-46 188.0 137 73.0
Ciclev10021870m.g Citrus clementina HOM05D001588 ORTHO05D006118 2.0e-45 186.4 136 72.8
vmacro13949 Vaccinium macrocarpon HOM05D001588 ORTHO05D006118 2.6e-45 186.0 136 69.9
Nn1g01478 Nelumbo nucifera HOM05D001588 ORTHO05D006118 3.3e-45 185.7 136 70.6
Cfa012158 Carpinus fangiana HOM05D001588 ORTHO05D006118 4.4e-45 185.3 136 73.5
COL.COLO4_34441 Corchorus olitorius HOM05D001588 ORTHO05D006118 9.7e-45 184.1 137 70.8
Hma1.2p1_1788F.1_g302410 Hydrangea macrophylla HOM05D001588 ORTHO05D006118 9.7e-45 184.1 136 72.1
Haze_08869 Corylus avellana HOM05D001588 ORTHO05D006118 1.3e-44 183.7 136 72.8
TWI81G0248 Tripterygium wilfordii HOM05D001588 ORTHO05D006118 1.7e-44 183.3 137 71.5
DCAR_000604 Daucus carota HOM05D001588 ORTHO05D006118 2.2e-44 183.0 136 71.3
Gohir.A12G227500 Gossypium hirsutum HOM05D001588 ORTHO05D006118 2.2e-44 183.0 137 70.8
Gohir.D12G229800 Gossypium hirsutum HOM05D001588 ORTHO05D006118 2.2e-44 183.0 137 70.8
Gorai.008G246100 Gossypium raimondii HOM05D001588 ORTHO05D006118 2.2e-44 183.0 137 70.8
Medtr8g098460 Medicago truncatula HOM05D001588 ORTHO05D006118 2.8e-44 182.6 136 69.1
ECA246G0963 Erigeron canadensis HOM05D001588 ORTHO05D006118 3.7e-44 182.2 136 69.1
Lj4g0014630 Lotus japonicus HOM05D001588 ORTHO05D006118 8.2e-44 181.0 136 69.1
Lalb_Chr16g0389911 Lupinus albus HOM05D001588 ORTHO05D006118 8.2e-44 181.0 136 69.9
Lj1g0021351 Lotus japonicus HOM05D001588 ORTHO05D006118 1.1e-43 180.6 136 68.4
QL12p018372 Quercus lobata HOM05D001588 ORTHO05D006118 1.4e-43 180.3 136 72.8
Rhsim07G0091600 Rhododendron simsii HOM05D001588 ORTHO05D006118 1.4e-43 180.3 136 69.1
TPR.G12758 Trifolium pratense HOM05D001588 ORTHO05D006118 1.4e-43 180.3 136 68.4
Lsat_1_v5_gn_3_7600 Lactuca sativa HOM05D001588 ORTHO05D006118 1.8e-43 179.9 114 78.1
PGR031G0224 Punica granatum HOM05D001588 ORTHO05D006118 1.8e-43 179.9 137 69.3
Sc07g0009680 Simmondsia chinensis HOM05D001588 ORTHO05D006118 4.1e-43 178.7 137 70.1
SGA_v2.0_scaffold253G45125 Striga asiatica HOM05D001588 ORTHO05D006118 4.1e-43 178.7 141 67.4
arahy.Tifrunner.gnm1.ann1.C1C7DX Arachis hypogaea HOM05D001588 ORTHO05D006118 5.3e-43 178.3 136 66.9
MELO3C005662.2 Cucumis melo HOM05D001588 ORTHO05D006118 5.3e-43 178.3 137 67.2
Sed0017409 Sechium edule HOM05D001588 ORTHO05D006118 5.3e-43 178.3 137 66.4
CsaV3_5G002940 Cucumis sativus L. HOM05D001588 ORTHO05D006118 9.1e-43 177.6 137 66.4
Glyma.05G206600 Glycine max HOM05D001588 ORTHO05D006118 1.6e-42 176.8 136 67.6
PSO170G0774 Papaver somniferum HOM05D001588 ORTHO05D006118 1.6e-42 176.8 136 66.2
Eucgr.D01864 Eucalyptus grandis HOM05D001588 ORTHO05D006118 2.0e-42 176.4 136 67.6
VMungo0251G1987 Vigna mungo HOM05D001588 ORTHO05D006118 2.6e-42 176.0 136 66.2
AL6G46210 Arabidopsis lyrata HOM05D001588 ORTHO05D006118 3.5e-42 175.6 136 66.9
ClCG01G002850 Citrullus lanatus HOM05D001588 ORTHO05D006118 3.5e-42 175.6 139 64.0
BcaC03g16342 Brassica carinata HOM05D001588 ORTHO05D006118 7.7e-42 174.5 136 64.7
C02p41670 Brassica napus HOM05D001588 ORTHO05D006118 7.7e-42 174.5 136 64.7
BolC2t10183H Brassica oleracea HOM05D001588 ORTHO05D006118 7.7e-42 174.5 136 64.7
CARHR254790 Cardamine hirsuta HOM05D001588 ORTHO05D006118 7.7e-42 174.5 136 67.6
HanXRQChr06g0165801 Helianthus annuus HOM05D001588 ORTHO05D006118 1.0e-41 174.1 136 64.7
Thecc.03G276800 Theobroma cacao HOM05D001588 ORTHO05D006118 1.0e-41 174.1 129 72.1
AUR62017239 Chenopodium quinoa HOM05D001588 ORTHO05D006118 1.3e-41 173.7 136 64.0
Thhalv10028795m.g Eutrema salsugineum HOM05D001588 ORTHO05D006118 1.3e-41 173.7 136 66.2
Manes.02G023300 Manihot esculenta HOM05D001588 ORTHO05D006118 1.3e-41 173.7 137 66.4
Aa31LG9G10710 Aethionema arabicum HOM05D001588 ORTHO05D006118 1.7e-41 173.3 136 66.2
A02p26200 Brassica napus HOM05D001588 ORTHO05D006118 1.7e-41 173.3 136 64.7
BraA02t07619Z Brassica rapa HOM05D001588 ORTHO05D006118 1.7e-41 173.3 136 64.7
Phvul.002G288200 Phaseolus vulgaris HOM05D001588 ORTHO05D006118 1.7e-41 173.3 137 66.4
PGSC0003DMG400005820 Solanum tuberosum HOM05D001588 ORTHO05D006118 1.7e-41 173.3 140 63.6
Solyc08g008010.4 Solanum lycopersicum HOM05D001588 ORTHO05D006118 2.2e-41 172.9 143 63.6
Carub.0006s3072 Capsella rubella HOM05D001588 ORTHO05D006118 2.9e-41 172.6 136 66.2
CAN.G792.82 Capsicum annuum HOM05D001588 ORTHO05D006118 2.9e-41 172.6 136 64.7
Sp6g05900 Schrenkiella parvula HOM05D001588 ORTHO05D006118 2.9e-41 172.6 136 66.2
Sopen08g003890 Solanum pennellii HOM05D001588 ORTHO05D006118 2.9e-41 172.6 143 63.6
Ah.12g057170 Amaranthus hybridus HOM05D001588 ORTHO05D006118 3.8e-41 172.2 136 64.0
Duzib084G0785 Durio zibethinus HOM05D001588 ORTHO05D006118 3.8e-41 172.2 136 66.2
Medtr7g103510 Medicago truncatula HOM05D001588 ORTHO05D006118 3.8e-41 172.2 132 66.7
Sopen08g003870 Solanum pennellii HOM05D001588 ORTHO05D006118 3.8e-41 172.2 136 64.7
Sopen08g003880 Solanum pennellii HOM05D001588 ORTHO05D006118 3.8e-41 172.2 136 64.7
MBI18_g19084_MAGBIO Magnolia biondii HOM05D001588 ORTHO05D006118 6.5e-41 171.4 131 67.9
Os04g0555900 Oryza sativa ssp. japonica HOM05D001588 ORTHO05D006118 6.5e-41 171.4 136 65.4
PGSC0003DMG401014619 Solanum tuberosum HOM05D001588 ORTHO05D006118 6.5e-41 171.4 136 64.0
AUR62010596 Chenopodium quinoa HOM05D001588 ORTHO05D006118 8.5e-41 171.0 136 64.0
Ca_17543_v3 Cicer arietinum L. HOM05D001588 ORTHO05D006118 1.5e-40 170.2 131 68.7
AT4G11640 Arabidopsis thaliana HOM05D001588 ORTHO05D006118 1.9e-40 169.9 136 65.4
MSTRG.25594 Avicennia marina HOM05D001588 ORTHO05D006118 1.9e-40 169.9 136 67.6
Potri.001G106000 Populus trichocarpa HOM05D001588 ORTHO05D006118 1.9e-40 169.9 136 65.4
Cc08_g14500 Coffea canephora HOM05D001588 ORTHO05D006118 2.5e-40 169.5 136 66.2
Glyma.08G013500 Glycine max HOM05D001588 ORTHO05D006118 2.5e-40 169.5 136 65.4
Nitab4.5_0003907g0030 Nicotiana tabacum HOM05D001588 ORTHO05D006118 3.2e-40 169.1 136 64.0
Psat6g176200 Pisum sativum HOM05D001588 ORTHO05D006118 3.2e-40 169.1 132 66.7
Psat7g034240 Pisum sativum HOM05D001588 ORTHO05D006118 3.2e-40 169.1 130 66.9
Solyc08g008000.2 Solanum lycopersicum HOM05D001588 ORTHO05D006118 3.2e-40 169.1 136 63.2
EL10Ac5g12783 Beta vulgaris HOM05D001588 ORTHO05D006118 4.2e-40 168.7 136 63.2
Manes.02G023000 Manihot esculenta HOM05D001588 ORTHO05D006118 4.2e-40 168.7 133 64.7
Sabra01G0080300 Salix brachista HOM05D001588 ORTHO05D006118 4.2e-40 168.7 136 65.4
PGR031G0451 Punica granatum HOM05D001588 ORTHO05D006118 7.2e-40 167.9 105 79.0
Migut.N02016 Erythranthe guttata HOM05D001588 ORTHO05D006118 9.4e-40 167.5 136 64.0
Migut.N01981 Erythranthe guttata HOM05D001588 ORTHO05D006118 1.6e-39 166.8 136 64.0
Hund14771 Selenicereus undatus HOM05D001588 ORTHO05D006118 2.1e-39 166.4 136 63.2
SalBow3G3462 Salvia bowleyana HOM05D001588 ORTHO05D006118 6.1e-39 164.9 136 63.2
Peaxi162Scf00102g01542 Petunia axillaris HOM05D001588 ORTHO05D006118 8.0e-39 164.5 136 63.2
Psat7g008360 Pisum sativum HOM05D001588 ORTHO05D006118 8.0e-39 164.5 136 62.5
HanXRQChr15g0469471 Helianthus annuus HOM05D001588 ORTHO05D006118 1.4e-38 163.7 109 72.5
SEGI_39536 Sequoiadendron giganteum HOM05D001588 ORTHO05D006118 1.4e-38 163.7 137 62.8
THA.LOC104806384 Tarenaya hassleriana HOM05D001588 ORTHO05D006118 1.8e-38 163.3 128 68.0
HanXRQChr15g0469771 Helianthus annuus HOM05D001588 ORTHO05D006118 3.0e-38 162.5 109 73.4
Lj1g0001953 Lotus japonicus HOM05D001588 ORTHO05D006118 6.7e-38 161.4 135 61.5
HanXRQChr15g0469751 Helianthus annuus HOM05D001588 ORTHO05D006118 1.2e-37 160.6 109 72.5
BcaB05g23820 Brassica carinata HOM05D001588 ORTHO05D006118 5.7e-37 158.3 127 64.6
HanXRQChr15g0469621 Helianthus annuus HOM05D001588 ORTHO05D006118 4.8e-36 155.2 110 71.8
HanXRQChr15g0469631 Helianthus annuus HOM05D001588 ORTHO05D006118 6.3e-36 154.8 110 71.8
HanXRQChr15g0469761 Helianthus annuus HOM05D001588 ORTHO05D006118 3.1e-35 152.5 103 71.8
Actinidia33759 Actinidia chinensis HOM05D001588 ORTHO05D006118 4.5e-34 148.7 115 67.0
HanXRQChr02g0046401 Helianthus annuus HOM05D001588 ORTHO05D006118 4.5e-34 148.7 113 65.5
HanXRQChr15g0469451 Helianthus annuus HOM05D001588 ORTHO05D006118 1.1e-32 144.1 101 67.3
Mapoly0138s0043 Marchantia polymorpha HOM05D001588 ORTHO05D006118 2.5e-32 142.9 135 55.6
SMO351G0491 Selaginella moellendorffii HOM05D001588 ORTHO05D006118 2.5e-32 142.9 132 55.3
ATR0680G293 Amborella trichopoda HOM05D001588 ORTHO05D006118 2.1e-31 139.8 165 49.1
HanXRQChr15g0469461 Helianthus annuus HOM05D001588 ORTHO05D006118 1.8e-30 136.7 109 63.3
Lj2A189T33 Lonicera japonica HOM05D001588 ORTHO05D006118 2.3e-30 136.3 111 66.7
AagrBONN_evm.TU.Sc2ySwM_344.4994 Anthoceros agrestis HOM05D001588 ORTHO05D006118 3.0e-30 136.0 105 58.1
AagrBONN_evm.TU.Sc2ySwM_344.5005 Anthoceros agrestis HOM05D001588 ORTHO05D006118 3.0e-30 136.0 105 58.1
CBR_g31514 Chara braunii HOM05D001588 ORTHO05D006118 1.2e-29 134.0 132 52.3
Oeu009178.1 Olea europaea HOM05D001588 ORTHO05D006118 1.4e-27 127.1 137 54.0
Lj1g0019141 Lotus japonicus HOM05D001588 ORTHO05D006118 4.1e-27 125.6 147 51.0
unitig_37.g12250 Utricularia gibba HOM05D004635 ORTHO05D005899 7.0e-27 124.8 110 61.8
Cre06.g278101 Chlamydomonas reinhardtii HOM05D001588 ORTHO05D006118 9.1e-27 124.4 136 47.1
Cpa.g.sc74.12 Carica papaya HOM05D001588 ORTHO05D006118 7.7e-26 121.3 76 76.3
PRCOL_00005312 Prasinoderma coloniale HOM05D001588 ORTHO05D006118 2.5e-24 116.3 135 48.1
ECA246G1451 Erigeron canadensis HOM05D001588 ORTHO05D006118 2.8e-23 112.8 76 69.7
HPP92_008513 Vanilla planifolia HOM05D001588 ORTHO05D006118 2.8e-23 112.8 86 65.1
MCO03G466 Micromonas commoda HOM05D001588 ORTHO05D006118 1.4e-22 110.5 117 52.1
HanXRQChr15g0469611 Helianthus annuus HOM05D001588 ORTHO05D006118 2.8e-20 102.8 109 52.3
ECA247G1386 Erigeron canadensis HOM05D003827 ORTHO05D004518 5.4e-19 98.6 77 66.2
Nitab4.5_0004836g0070 Nicotiana tabacum HOM05D001588 ORTHO05D006118 1.0e-17 94.4 60 71.7
PGSC0003DMG402014619 Solanum tuberosum HOM05D001588 ORTHO05D006118 5.2e-14 82.0 57 68.4
Cfa025518 Carpinus fangiana HOM05D001588 ORTHO05D006118 3.2e-11 72.8 111 39.6
CAN.G792.84 Capsicum annuum HOM05D004635 ORTHO05D005899 1.7e-09 67.0 43 72.1
MCO05G122 Micromonas commoda HOM05D001588 ORTHO05D006118 1.8e-06 57.0 107 32.7


User provided reference genes

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