Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G065700 Prunus persica HOM05D004377 ORTHO05D005168 5.4e-156 554.3 282 100.0
MD04G1059900 Malus domestica HOM05D004377 ORTHO05D005168 9.3e-148 526.9 282 94.7
MD06G1053000 Malus domestica HOM05D004377 ORTHO05D005168 8.7e-146 520.4 282 93.3
RcHm_v2.0_Chr7g0203831 Rosa chinensis HOM05D004377 ORTHO05D005168 2.6e-142 508.8 282 90.1
FAN18G3774 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.3e-141 506.5 282 89.4
FAN13G0320 Fragaria x ananassa HOM05D004377 ORTHO05D005168 3.8e-141 505.0 282 88.7
FAN04G2360 Fragaria x ananassa HOM05D004377 ORTHO05D005168 6.4e-141 504.2 282 89.0
Manes.02G041200 Manihot esculenta HOM05D004377 ORTHO05D005168 2.3e-138 495.7 282 86.9
Cfa012684 Carpinus fangiana HOM05D004377 ORTHO05D005168 1.5e-137 493.0 282 86.5
Thecc.03G248500 Theobroma cacao HOM05D004377 ORTHO05D005168 5.6e-137 491.1 282 85.1
Ciclev10021569m.g Citrus clementina HOM05D004377 ORTHO05D005168 8.1e-136 487.3 282 84.0
Duzib205G1290 Durio zibethinus HOM05D004377 ORTHO05D005168 1.1e-135 486.9 282 84.0
Eucgr.D02097 Eucalyptus grandis HOM05D004377 ORTHO05D005168 1.8e-135 486.1 282 84.4
COL.COLO4_37134 Corchorus olitorius HOM05D004377 ORTHO05D005168 3.1e-135 485.3 282 83.7
Gohir.D12G218200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 3.1e-135 485.3 282 84.4
Gorai.008G233800 Gossypium raimondii HOM05D004377 ORTHO05D005168 3.1e-135 485.3 282 84.4
Hma1.2p1_0316F.1_g122900 Hydrangea macrophylla HOM05D004377 ORTHO05D005168 1.5e-134 483.0 282 82.3
Gohir.A12G215600 Gossypium hirsutum HOM05D004377 ORTHO05D005168 2.0e-134 482.6 282 83.3
CSS0001039 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 3.4e-134 481.9 282 81.9
Dinv39164 Davidia involucrata HOM05D004377 ORTHO05D005168 3.4e-134 481.9 280 81.8
CiPaw.12G050900 Carya illinoinensis HOM05D004377 ORTHO05D005168 7.6e-134 480.7 282 84.0
Atru.chr9.1283 Acer truncatum HOM05D004377 ORTHO05D005168 1.0e-133 480.3 280 83.6
PGR031G0408 Punica granatum HOM05D004377 ORTHO05D005168 1.3e-133 479.9 282 82.6
FAN08G2251 Fragaria x ananassa HOM05D004377 ORTHO05D005168 8.4e-133 477.2 277 85.9
Psat4g072760 Pisum sativum HOM05D004377 ORTHO05D005168 8.4e-133 477.2 282 83.0
CANSAT21G0788 Cannabis sativa HOM05D004377 ORTHO05D005168 1.9e-132 476.1 282 84.4
TWI81G0568 Tripterygium wilfordii HOM05D004377 ORTHO05D005168 3.2e-132 475.3 282 81.2
Potri.001G155900 Populus trichocarpa HOM05D004377 ORTHO05D005168 7.1e-132 474.2 282 83.3
Glyma.05G061700 Glycine max HOM05D004377 ORTHO05D005168 9.3e-132 473.8 282 81.9
Ca_21977_v3 Cicer arietinum L. HOM05D004377 ORTHO05D005168 2.7e-131 472.2 282 81.9
Medtr4g100740 Medicago truncatula HOM05D004377 ORTHO05D005168 2.7e-131 472.2 282 82.6
TPR.G37661 Trifolium pratense HOM05D004377 ORTHO05D005168 4.6e-131 471.5 282 81.9
CsaV3_5G004410 Cucumis sativus L. HOM05D004377 ORTHO05D005168 7.9e-131 470.7 282 80.1
arahy.Tifrunner.gnm1.ann1.XFA1VC Arachis hypogaea HOM05D004377 ORTHO05D005168 1.8e-130 469.5 281 81.9
MELO3C005517.2 Cucumis melo HOM05D004377 ORTHO05D005168 1.8e-130 469.5 282 79.8
Glyma.17G143400 Glycine max HOM05D004377 ORTHO05D005168 2.3e-130 469.2 282 81.2
Dinv21652 Davidia involucrata HOM05D004377 ORTHO05D005168 3.0e-130 468.8 282 79.8
Phvul.003G222200 Phaseolus vulgaris HOM05D004377 ORTHO05D005168 3.9e-130 468.4 282 80.9
Gohir.A11G027200 Gossypium hirsutum HOM05D004377 ORTHO05D005168 6.7e-130 467.6 282 80.1
Lalb_Chr05g0221171 Lupinus albus HOM05D004377 ORTHO05D005168 6.7e-130 467.6 282 80.1
Sed0026125 Sechium edule HOM05D004377 ORTHO05D005168 6.7e-130 467.6 282 80.1
Potri.003G078900 Populus trichocarpa HOM05D004377 ORTHO05D005168 3.3e-129 465.3 282 81.6
VMungo0251G2239 Vigna mungo HOM05D004377 ORTHO05D005168 3.3e-129 465.3 281 80.1
CAN.G1227.21 Capsicum annuum HOM05D004377 ORTHO05D005168 4.3e-129 464.9 282 78.7
Lalb_Chr16g0386801 Lupinus albus HOM05D004377 ORTHO05D005168 5.7e-129 464.5 282 79.4
Peaxi162Scf00102g00106 Petunia axillaris HOM05D004377 ORTHO05D005168 5.7e-129 464.5 282 79.8
Lj4g0001332 Lotus japonicus HOM05D004377 ORTHO05D005168 9.6e-129 463.8 282 79.4
ClCG01G004220 Citrullus lanatus HOM05D004377 ORTHO05D005168 1.3e-128 463.4 293 77.5
Solyc08g007320.3 Solanum lycopersicum HOM05D004377 ORTHO05D005168 1.6e-128 463.0 282 78.4
HanXRQChr03g0088831 Helianthus annuus HOM05D004377 ORTHO05D005168 8.2e-128 460.7 282 80.1
Nn1g02340 Nelumbo nucifera HOM05D004377 ORTHO05D005168 1.4e-127 459.9 282 78.7
Lsat_1_v5_gn_6_92481 Lactuca sativa HOM05D004377 ORTHO05D005168 1.8e-127 459.5 282 79.4
Sed0028099 Sechium edule HOM05D004377 ORTHO05D005168 1.8e-127 459.5 282 79.1
Migut.A01127 Erythranthe guttata HOM05D004377 ORTHO05D005168 2.4e-127 459.1 282 78.7
Nn4g26339 Nelumbo nucifera HOM05D004377 ORTHO05D005168 5.3e-127 458.0 282 78.7
Actinidia10840 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.2e-126 456.8 284 78.5
ECA240G2341 Erigeron canadensis HOM05D004377 ORTHO05D005168 1.2e-126 456.8 282 79.1
MSTRG.12119 Avicennia marina HOM05D004377 ORTHO05D005168 2.0e-126 456.1 282 77.7
DCAR_008505 Daucus carota HOM05D004377 ORTHO05D005168 2.0e-126 456.1 282 78.0
Cc08_g12200 Coffea canephora HOM05D004377 ORTHO05D005168 4.5e-126 454.9 282 75.5
Lj4g0011374 Lotus japonicus HOM05D004377 ORTHO05D005168 1.0e-125 453.8 282 78.7
Aqoxy5G00459 Aquilegia oxysepala HOM05D004377 ORTHO05D005168 8.4e-125 450.7 282 76.2
Actinidia02148 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.1e-124 450.3 282 77.0
CSS0042619 Camellia sinensis var. sinensis HOM05D004377 ORTHO05D005168 3.2e-124 448.7 269 77.7
TAR375G0521 Trochodendron aralioides HOM05D004377 ORTHO05D005168 9.3e-124 447.2 286 76.6
THA.LOC104798366 Tarenaya hassleriana HOM05D004377 ORTHO05D005168 1.2e-123 446.8 283 78.4
arahy.Tifrunner.gnm1.ann1.E2A47G Arachis hypogaea HOM05D004377 ORTHO05D005168 1.8e-122 443.0 341 67.7
Nitab4.5_0002225g0040 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.8e-122 443.0 288 75.7
PSO832G1836 Papaver somniferum HOM05D004377 ORTHO05D005168 3.0e-122 442.2 282 75.5
Sp2g12120 Schrenkiella parvula HOM05D004377 ORTHO05D005168 3.9e-122 441.8 283 77.4
Rhsim07G0110500 Rhododendron simsii HOM05D004377 ORTHO05D005168 1.1e-121 440.3 290 74.8
arahy.Tifrunner.gnm1.ann1.ID9RWP Arachis hypogaea HOM05D004377 ORTHO05D005168 1.9e-121 439.5 282 78.0
GSVIVG01006273001 Vitis vinifera HOM05D004377 ORTHO05D005168 2.5e-121 439.1 266 80.8
CARHR173960 Cardamine hirsuta HOM05D004377 ORTHO05D005168 3.3e-121 438.7 283 76.7
PSO210G5659 Papaver somniferum HOM05D004377 ORTHO05D005168 3.3e-121 438.7 282 74.8
Carub.0007s2400 Capsella rubella HOM05D004377 ORTHO05D005168 5.7e-121 438.0 286 77.3
AUR62007109 Chenopodium quinoa HOM05D004377 ORTHO05D005168 7.4e-121 437.6 283 75.6
vmacro00002 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 7.4e-121 437.6 316 68.7
Lj8A268T28 Lonicera japonica HOM05D004377 ORTHO05D005168 9.7e-121 437.2 266 77.4
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 1.3e-120 436.8 283 76.0
Thhalv10000986m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 1.3e-120 436.8 283 75.6
Carub.0008s0037 Capsella rubella HOM05D004377 ORTHO05D005168 1.6e-120 436.4 283 77.0
AT5G47420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 2.8e-120 435.6 283 77.0
Haze_07947 Corylus avellana HOM05D004377 ORTHO05D005168 2.8e-120 435.6 285 77.9
Ah.12g054290 Amaranthus hybridus HOM05D004377 ORTHO05D005168 3.7e-120 435.3 278 74.5
AL8G10630 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 4.8e-120 434.9 283 76.3
BraA02t08132Z Brassica rapa HOM05D004377 ORTHO05D005168 4.8e-120 434.9 281 75.4
CARHR224020 Cardamine hirsuta HOM05D004377 ORTHO05D005168 1.4e-119 433.3 286 75.5
Gohir.D11G026400 Gossypium hirsutum HOM05D004377 ORTHO05D005168 1.8e-119 433.0 282 76.2
HanXRQChr17g0549351 Helianthus annuus HOM05D004377 ORTHO05D005168 1.8e-119 433.0 282 75.9
Sabra03G0049000 Salix brachista HOM05D004377 ORTHO05D005168 3.1e-119 432.2 266 81.2
AT4G17420 Arabidopsis thaliana HOM05D004377 ORTHO05D005168 6.9e-119 431.0 286 75.9
RcHm_v2.0_Chr7g0203871 Rosa chinensis HOM05D004377 ORTHO05D005168 9.0e-119 430.6 282 79.8
Sabra01G0125600 Salix brachista HOM05D004377 ORTHO05D005168 3.4e-118 428.7 295 74.2
Lalb_Chr04g0253671 Lupinus albus HOM05D004377 ORTHO05D005168 4.5e-118 428.3 282 76.6
AL7G37300 Arabidopsis lyrata HOM05D004377 ORTHO05D005168 1.0e-117 427.2 286 75.5
Duzib068G0502 Durio zibethinus HOM05D004377 ORTHO05D005168 1.0e-117 427.2 282 77.0
DCAR_006841 Daucus carota HOM05D004377 ORTHO05D005168 1.3e-117 426.8 266 77.4
Thhalv10025916m.g Eutrema salsugineum HOM05D004377 ORTHO05D005168 2.9e-117 425.6 286 74.1
Nitab4.5_0000712g0120 Nicotiana tabacum HOM05D004377 ORTHO05D005168 3.8e-117 425.2 279 74.2
ATR0697G021 Amborella trichopoda HOM05D004377 ORTHO05D005168 8.5e-117 424.1 282 72.3
A01p19930 Brassica napus HOM05D004377 ORTHO05D005168 8.5e-117 424.1 286 75.2
BraA01t01921Z Brassica rapa HOM05D004377 ORTHO05D005168 8.5e-117 424.1 286 75.2
A01p19950 Brassica napus HOM05D004377 ORTHO05D005168 1.9e-116 422.9 286 75.2
BcaNung00095 Brassica carinata HOM05D004377 ORTHO05D005168 2.5e-116 422.5 286 74.5
Sp7g16770 Schrenkiella parvula HOM05D004377 ORTHO05D005168 2.5e-116 422.5 286 73.4
BcaC09g50474 Brassica carinata HOM05D004377 ORTHO05D005168 5.5e-116 421.4 286 74.8
vmacro14068 Vaccinium macrocarpon HOM05D004377 ORTHO05D005168 6.1e-115 417.9 267 76.0
C01p25030 Brassica napus HOM05D004377 ORTHO05D005168 7.9e-115 417.5 286 74.1
BolC2t10957H Brassica oleracea HOM05D004377 ORTHO05D005168 1.8e-114 416.4 281 73.3
CDE02G4267 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 3.0e-114 415.6 286 70.3
Sc07g0009230 Simmondsia chinensis HOM05D004377 ORTHO05D005168 3.9e-114 415.2 266 74.4
SGA_v2.0_scaffold199G41183 Striga asiatica HOM05D004377 ORTHO05D005168 5.1e-114 414.8 313 67.7
A02p31280 Brassica napus HOM05D004377 ORTHO05D005168 8.8e-114 414.1 325 64.9
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 1.7e-112 409.8 272 75.4
BolC1t02447H Brassica oleracea HOM05D004377 ORTHO05D005168 4.8e-112 408.3 276 74.3
TAR629G1293 Trochodendron aralioides HOM05D004377 ORTHO05D005168 2.4e-111 406.0 282 71.6
Cpa.g.sc29.192 Carica papaya HOM05D004377 ORTHO05D005168 6.9e-111 404.4 240 80.4
AUR62019971 Chenopodium quinoa HOM05D004377 ORTHO05D005168 6.9e-111 404.4 283 71.0
HPP92_007932 Vanilla planifolia HOM05D004377 ORTHO05D005168 1.2e-110 403.7 282 68.4
HPP92_007952 Vanilla planifolia HOM05D004377 ORTHO05D005168 1.2e-110 403.7 282 68.4
CDE05G2427 Ceratophyllum demersum HOM05D004377 ORTHO05D005168 7.7e-110 401.0 286 67.5
BcaC03g16958 Brassica carinata HOM05D004377 ORTHO05D005168 1.4e-108 396.7 282 72.3
C02p48650 Brassica napus HOM05D004377 ORTHO05D005168 1.4e-108 396.7 282 72.3
SEGI_38141 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 2.5e-108 396.0 281 69.4
MBI09_g26154_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 4.2e-108 395.2 306 65.7
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 2.7e-107 392.5 272 73.2
unitig_736.g22277 Utricularia gibba HOM05D004377 ORTHO05D005168 6.7e-106 387.9 247 74.5
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 2.0e-105 386.3 250 76.0
FvH4_5g19370 Fragaria vesca HOM05D004377 ORTHO05D005168 2.6e-105 386.0 213 88.3
Lsat_1_v5_gn_3_1221 Lactuca sativa HOM05D004377 ORTHO05D005168 3.3e-105 385.6 287 68.3
Gorai.007G028700 Gossypium raimondii HOM05D004377 ORTHO05D005168 2.8e-104 382.5 282 70.6
RcHm_v2.0_Chr2g0120481 Rosa chinensis HOM05D004377 ORTHO05D005168 2.0e-102 376.3 225 83.1
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 7.7e-102 374.4 276 69.9
Sopen08g003260 Solanum pennellii HOM05D004377 ORTHO05D005168 2.2e-101 372.9 231 76.6
EL10Ac5g12360 Beta vulgaris HOM05D004377 ORTHO05D005168 1.9e-100 369.8 283 66.8
MBI08_g41738_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 1.2e-99 367.1 266 67.3
Os03g0747300 Oryza sativa ssp. japonica HOM05D004377 ORTHO05D005168 1.6e-99 366.7 283 61.5
arahy.Tifrunner.gnm1.ann1.CS1SDE Arachis hypogaea HOM05D004377 ORTHO05D005168 3.6e-99 365.5 341 59.8
SGA_v2.0_scaffold199G41214 Striga asiatica HOM05D004377 ORTHO05D005168 4.1e-95 352.1 213 77.5
Nitab4.5_0000618g0130 Nicotiana tabacum HOM05D004377 ORTHO05D005168 1.2e-94 350.5 279 63.4
Actinidia14411 Actinidia chinensis HOM05D004377 ORTHO05D005168 4.5e-94 348.6 258 69.4
SHI09598 Sapria himalayana HOM05D004377 ORTHO05D005168 1.7e-88 330.1 267 60.7
BcaC06g34256 Brassica carinata HOM05D004377 ORTHO05D005168 2.7e-86 322.8 249 68.3
BcaC06g31391 Brassica carinata HOM05D004377 ORTHO05D005168 2.4e-79 299.7 281 59.8
SMO356G0134 Selaginella moellendorffii HOM05D004377 ORTHO05D005168 3.5e-78 295.8 283 54.4
Oeu027011.1 Olea europaea HOM05D004377 ORTHO05D005168 1.6e-75 287.0 239 60.7
Zm00001eb057110 Zea mays HOM05D004377 ORTHO05D005168 1.7e-72 276.9 213 59.6
FAN15G2264 Fragaria x ananassa HOM05D004377 ORTHO05D005168 3.1e-58 229.6 282 52.5
FAN27G2545 Fragaria x ananassa HOM05D004377 ORTHO05D005168 1.2e-57 227.6 328 46.3
Mapoly0006s0223 Marchantia polymorpha HOM05D004377 ORTHO05D005168 2.7e-54 216.5 172 62.8
AagrBONN_evm.TU.Sc2ySwM_362.367 Anthoceros agrestis HOM05D004377 ORTHO05D005168 5.1e-53 212.2 173 59.0
Hund14575 Selenicereus undatus HOM05D004377 ORTHO05D005168 5.6e-52 208.8 172 63.4
Actinidia31514 Actinidia chinensis HOM05D004377 ORTHO05D005168 7.6e-49 198.4 209 56.9
Oeu012199.1 Olea europaea HOM05D004377 ORTHO05D005168 4.9e-48 195.7 120 70.8
Aa31LG6G160 Aethionema arabicum HOM05D004377 ORTHO05D005168 1.6e-46 190.7 269 43.9
TAR374G0316 Trochodendron aralioides HOM05D004377 ORTHO05D005168 4.0e-42 176.0 122 68.9
MBI09_g24445_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 5.4e-39 165.6 180 51.1
FAN24G1967 Fragaria x ananassa HOM05D004377 ORTHO05D005168 3.4e-33 146.4 283 40.6
FvH4_2g20120 Fragaria vesca HOM05D004377 ORTHO05D005168 1.1e-28 131.3 275 38.9
GSVIVG01015047001 Vitis vinifera HOM05D004377 ORTHO05D005168 1.3e-27 127.9 85 65.9
MCO15G334 Micromonas commoda HOM05D004377 ORTHO05D005168 3.1e-26 123.2 220 34.1
SEGI_12924 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 9.9e-25 118.2 120 50.0
MBI09_g42042_MAGBIO Magnolia biondii HOM05D004377 ORTHO05D005168 2.2e-24 117.1 175 43.4
Nitab4.5_0002372g0030 Nicotiana tabacum HOM05D004377 ORTHO05D005168 2.1e-22 110.5 66 84.8
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 7.9e-22 108.6 118 50.8
SEGI_18353 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 3.3e-20 103.2 94 55.3
Actinidia31513 Actinidia chinensis HOM05D004377 ORTHO05D005168 1.6e-14 84.3 52 82.7
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.1e-13 79.3 47 83.0
SEGI_16571 Sequoiadendron giganteum HOM05D004377 ORTHO05D005168 2.1e-06 57.4 49 59.2


User provided reference genes

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