Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G064600 Prunus persica HOM05D004501 ORTHO05D004944 0.0e+00 1809.3 901 100.0
MD04G1060900 Malus domestica HOM05D004501 ORTHO05D004944 0.0e+00 1473.0 902 82.6
RcHm_v2.0_Chr7g0204151 Rosa chinensis HOM05D004501 ORTHO05D004944 0.0e+00 1353.2 904 77.3
FAN08G1352 Fragaria x ananassa HOM05D004501 ORTHO05D004944 0.0e+00 1324.3 904 75.9
FvH4_5g19540 Fragaria vesca HOM05D004501 ORTHO05D004944 0.0e+00 1322.0 905 75.7
FAN13G2915 Fragaria x ananassa HOM05D004501 ORTHO05D004944 0.0e+00 1304.7 911 74.9
FAN18G4013 Fragaria x ananassa HOM05D004501 ORTHO05D004944 0.0e+00 1263.8 938 71.3
Haze_07939 Corylus avellana HOM05D004501 ORTHO05D004944 0.0e+00 1105.9 903 65.2
CANSAT21G1630 Cannabis sativa HOM05D004501 ORTHO05D004944 0.0e+00 1099.7 905 65.7
QL12p011237 Quercus lobata HOM05D004501 ORTHO05D004944 0.0e+00 1097.4 894 65.8
Cfa012694 Carpinus fangiana HOM05D004501 ORTHO05D004944 0.0e+00 1095.5 903 65.1
CiPaw.11G082400 Carya illinoinensis HOM05D004501 ORTHO05D004944 0.0e+00 1083.2 903 63.5
Ciclev10018712m.g Citrus clementina HOM05D004501 ORTHO05D004944 1.8e-301 1039.3 907 61.4
Atru.chr9.1263 Acer truncatum HOM05D004501 ORTHO05D004944 1.0e-296 1023.5 910 60.5
Potri.001G155200 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.2e-296 1022.3 902 61.0
CiPaw.12G049700 Carya illinoinensis HOM05D004501 ORTHO05D004944 9.4e-295 1016.9 845 64.4
TWI15G0617 Tripterygium wilfordii HOM05D004501 ORTHO05D004944 3.6e-294 1015.0 902 60.4
Thecc.03G247200 Theobroma cacao HOM05D004501 ORTHO05D004944 5.4e-290 1001.1 907 59.6
GSVIVG01005813001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.6e-289 999.6 823 63.3
Eucgr.E00402 Eucalyptus grandis HOM05D004501 ORTHO05D004944 5.9e-289 997.7 903 59.9
Psat2g176440 Pisum sativum HOM05D004501 ORTHO05D004944 8.6e-288 993.8 906 58.3
PGR042G0255 Punica granatum HOM05D004501 ORTHO05D004944 7.2e-287 990.7 906 59.3
Ca_24594_v3 Cicer arietinum L. HOM05D004501 ORTHO05D004944 3.0e-285 985.3 907 58.5
Dinv21665 Davidia involucrata HOM05D004501 ORTHO05D004944 4.0e-285 984.9 857 62.5
Sabra03G0049600 Salix brachista HOM05D004501 ORTHO05D004944 5.4e-282 974.5 902 58.0
Medtr5g012940 Medicago truncatula HOM05D004501 ORTHO05D004944 1.2e-281 973.4 902 57.8
Potri.003G079700 Populus trichocarpa HOM05D004501 ORTHO05D004944 2.0e-281 972.6 903 58.8
vmacro14139 Vaccinium macrocarpon HOM05D004501 ORTHO05D004944 5.0e-280 968.0 905 59.0
Manes.01G084200 Manihot esculenta HOM05D004501 ORTHO05D004944 1.4e-277 959.9 902 58.4
Gorai.008G233400 Gossypium raimondii HOM05D004501 ORTHO05D004944 5.2e-277 958.0 908 58.3
COL.COLO4_37109 Corchorus olitorius HOM05D004501 ORTHO05D004944 2.6e-276 955.7 878 59.5
VMungo1215G1578 Vigna mungo HOM05D004501 ORTHO05D004944 3.4e-276 955.3 903 57.3
Glyma.01G207400 Glycine max HOM05D004501 ORTHO05D004944 1.3e-275 953.4 900 56.0
Duzib205G0832 Durio zibethinus HOM05D004501 ORTHO05D004944 4.9e-275 951.4 911 57.6
Rhsim07G0115200 Rhododendron simsii HOM05D004501 ORTHO05D004944 1.9e-274 949.5 923 57.0
Gohir.D12G217800 Gossypium hirsutum HOM05D004501 ORTHO05D004944 2.4e-274 949.1 908 57.7
Lj2C224T11 Lonicera japonica HOM05D004501 ORTHO05D004944 2.4e-274 949.1 914 58.1
Glyma.11G035800 Glycine max HOM05D004501 ORTHO05D004944 4.1e-274 948.3 902 56.1
Sabra01G0124800 Salix brachista HOM05D004501 ORTHO05D004944 1.2e-273 946.8 962 54.8
Gohir.A12G215200 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.5e-273 945.3 908 57.3
Lalb_Chr16g0379471 Lupinus albus HOM05D004501 ORTHO05D004944 4.6e-273 944.9 903 56.0
Lj2g0006235 Lotus japonicus HOM05D004501 ORTHO05D004944 2.5e-271 939.1 893 56.4
PGSC0003DMG400026239 Solanum tuberosum HOM05D004501 ORTHO05D004944 1.6e-270 936.4 899 57.7
Lalb_Chr09g0324311 Lupinus albus HOM05D004501 ORTHO05D004944 2.1e-270 936.0 888 56.1
Sed0022861 Sechium edule HOM05D004501 ORTHO05D004944 4.7e-270 934.9 907 56.1
Phvul.002G056400 Phaseolus vulgaris HOM05D004501 ORTHO05D004944 8.0e-270 934.1 901 55.9
AUR62007118 Chenopodium quinoa HOM05D004501 ORTHO05D004944 1.8e-269 932.9 903 56.4
arahy.Tifrunner.gnm1.ann1.0753T9 Arachis hypogaea HOM05D004501 ORTHO05D004944 8.9e-269 930.6 914 56.0
arahy.Tifrunner.gnm1.ann1.F6SWGC Arachis hypogaea HOM05D004501 ORTHO05D004944 8.9e-269 930.6 914 56.0
ClCG01G004260 Citrullus lanatus HOM05D004501 ORTHO05D004944 2.0e-268 929.5 945 54.7
CsaV3_5G004460 Cucumis sativus L. HOM05D004501 ORTHO05D004944 2.6e-268 929.1 907 56.2
Sed0003847 Sechium edule HOM05D004501 ORTHO05D004944 3.4e-268 928.7 899 57.8
Nn1g00910 Nelumbo nucifera HOM05D004501 ORTHO05D004944 7.5e-268 927.5 872 56.7
MELO3C005513.2 Cucumis melo HOM05D004501 ORTHO05D004944 9.2e-266 920.6 908 56.3
Sopen08g026820 Solanum pennellii HOM05D004501 ORTHO05D004944 1.6e-265 919.8 896 56.6
Solyc08g078320.3 Solanum lycopersicum HOM05D004501 ORTHO05D004944 2.7e-265 919.1 896 56.5
Cc08_g12070 Coffea canephora HOM05D004501 ORTHO05D004944 9.5e-263 910.6 903 55.4
Duzib068G0690 Durio zibethinus HOM05D004501 ORTHO05D004944 1.2e-262 910.2 910 56.3
Sc01g0008260 Simmondsia chinensis HOM05D004501 ORTHO05D004944 1.4e-261 906.7 842 56.9
Hund14524 Selenicereus undatus HOM05D004501 ORTHO05D004944 6.8e-261 904.4 903 54.9
CAN.G1178.8 Capsicum annuum HOM05D004501 ORTHO05D004944 4.9e-259 898.3 897 56.0
EL10Ac5g12334 Beta vulgaris HOM05D004501 ORTHO05D004944 1.1e-258 897.1 901 53.8
Gorai.003G175400 Gossypium raimondii HOM05D004501 ORTHO05D004944 3.2e-258 895.6 906 55.6
Oeu027013.1 Olea europaea HOM05D004501 ORTHO05D004944 1.2e-257 893.6 937 53.1
Gohir.D03G165700 Gossypium hirsutum HOM05D004501 ORTHO05D004944 6.0e-257 891.3 906 55.3
PSO675G3024 Papaver somniferum HOM05D004501 ORTHO05D004944 3.9e-256 888.6 924 53.7
THA.LOC104810067 Tarenaya hassleriana HOM05D004501 ORTHO05D004944 1.5e-255 886.7 902 54.2
Gohir.A03G006500 Gossypium hirsutum HOM05D004501 ORTHO05D004944 3.1e-253 879.0 906 55.2
Ah.12g054390 Amaranthus hybridus HOM05D004501 ORTHO05D004944 1.2e-252 877.1 849 55.4
TPR.G18132 Trifolium pratense HOM05D004501 ORTHO05D004944 5.4e-250 868.2 875 54.9
Aqoxy7G03746 Aquilegia oxysepala HOM05D004501 ORTHO05D004944 9.6e-247 857.4 911 52.7
CARHR134700 Cardamine hirsuta HOM05D004501 ORTHO05D004944 1.2e-246 857.1 907 51.9
PSO732G0005 Papaver somniferum HOM05D004501 ORTHO05D004944 3.1e-245 852.4 884 53.8
AL4G37360 Arabidopsis lyrata HOM05D004501 ORTHO05D004944 5.8e-244 848.2 907 52.0
Carub.0004s2192 Capsella rubella HOM05D004501 ORTHO05D004944 4.9e-243 845.1 908 52.2
AUR62019990 Chenopodium quinoa HOM05D004501 ORTHO05D004944 4.9e-243 845.1 902 52.5
Thhalv10016197m.g Eutrema salsugineum HOM05D004501 ORTHO05D004944 3.2e-242 842.4 904 51.7
AT2G39810 Arabidopsis thaliana HOM05D004501 ORTHO05D004944 1.0e-240 837.4 903 51.1
Hma1.2p1_1196F.1_g265990 Hydrangea macrophylla HOM05D004501 ORTHO05D004944 9.6e-239 830.9 805 56.6
Actinidia02160 Actinidia chinensis HOM05D004501 ORTHO05D004944 1.4e-237 827.0 902 51.6
Sp4g22100 Schrenkiella parvula HOM05D004501 ORTHO05D004944 2.4e-237 826.2 908 50.9
Nitab4.5_0010602g0010 Nicotiana tabacum HOM05D004501 ORTHO05D004944 1.5e-236 823.5 902 52.1
BcaB02g09084 Brassica carinata HOM05D004501 ORTHO05D004944 2.6e-236 822.8 876 51.9
ECA240G3755 Erigeron canadensis HOM05D004501 ORTHO05D004944 2.9e-235 819.3 877 52.9
Aa31LG5G19800 Aethionema arabicum HOM05D004501 ORTHO05D004944 2.1e-233 813.1 904 50.3
HanXRQChr13g0417701 Helianthus annuus HOM05D004501 ORTHO05D004944 2.7e-233 812.8 900 52.7
MSTRG.12127 Avicennia marina HOM05D004501 ORTHO05D004944 1.0e-232 810.8 619 65.3
A04p30230 Brassica napus HOM05D004501 ORTHO05D004944 2.3e-232 809.7 906 51.0
MD06G1054200 Malus domestica HOM05D004501 ORTHO05D004944 2.5e-231 806.2 516 79.7
HanXRQChr03g0088961 Helianthus annuus HOM05D004501 ORTHO05D004944 5.6e-231 805.1 900 52.0
C04p67630 Brassica napus HOM05D004501 ORTHO05D004944 1.4e-229 800.4 907 51.0
Peaxi162Scf00346g00112 Petunia axillaris HOM05D004501 ORTHO05D004944 1.8e-229 800.0 901 51.2
BraA04t18485Z Brassica rapa HOM05D004501 ORTHO05D004944 1.3e-227 793.9 931 49.7
BolC4t28262H Brassica oleracea HOM05D004501 ORTHO05D004944 1.4e-226 790.4 926 50.1
Lsat_1_v5_gn_6_93441 Lactuca sativa HOM05D004501 ORTHO05D004944 2.5e-226 789.6 903 51.1
SalBow6G6502 Salvia bowleyana HOM05D004501 ORTHO05D004944 5.8e-220 768.5 639 60.7
Migut.A01144 Erythranthe guttata HOM05D004501 ORTHO05D004944 2.9e-219 766.1 628 61.3
BcaB01g03573 Brassica carinata HOM05D004501 ORTHO05D004944 4.2e-218 762.3 871 49.6
Nitab4.5_0001590g0040 Nicotiana tabacum HOM05D004501 ORTHO05D004944 5.7e-215 751.9 929 47.9
ATR1145G029 Amborella trichopoda HOM05D004501 ORTHO05D004944 2.4e-213 746.5 952 47.6
SGA_v2.0_scaffold104G30193 Striga asiatica HOM05D004501 ORTHO05D004944 6.1e-209 731.9 648 58.8
BcaC01g05462 Brassica carinata HOM05D004501 ORTHO05D004944 2.8e-206 723.0 899 47.3
CSS0040587 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 2.8e-206 723.0 748 54.0
CDE11G0214 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 1.1e-197 694.5 682 54.3
Os03g0737200 Oryza sativa ssp. japonica HOM05D004501 ORTHO05D004944 5.3e-189 665.6 936 44.7
Rhsim13G0032200 Rhododendron simsii HOM05D004501 ORTHO05D004944 2.2e-187 660.2 551 62.6
SEGI_38311 Sequoiadendron giganteum HOM05D004501 ORTHO05D004944 9.4e-186 654.8 683 51.8
Zm00001eb056470 Zea mays HOM05D004501 ORTHO05D004944 8.0e-185 651.7 930 44.4
C03p26410 Brassica napus HOM05D004501 ORTHO05D004944 1.2e-180 637.9 882 44.2
HPP92_002600 Vanilla planifolia HOM05D004501 ORTHO05D004944 1.7e-179 634.0 685 51.2
CDE02G3094 Ceratophyllum demersum HOM05D004501 ORTHO05D004944 5.5e-178 629.0 920 43.9
Dinv39174 Davidia involucrata HOM05D004501 ORTHO05D004944 4.9e-166 589.3 385 76.4
CSS0032615 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.8e-165 587.4 721 48.5
DCAR_020178 Daucus carota HOM05D004501 ORTHO05D004944 1.5e-162 577.8 710 47.7
BolC3t15027H Brassica oleracea HOM05D004501 ORTHO05D004944 1.5e-159 567.8 472 59.1
Mapoly0088s0017 Marchantia polymorpha HOM05D004501 ORTHO05D004944 5.8e-159 565.8 679 47.1
Zm00001eb215300 Zea mays HOM05D004501 ORTHO05D004944 2.7e-156 557.0 870 41.6
Actinidia14399 Actinidia chinensis HOM05D004501 ORTHO05D004944 5.6e-154 549.3 759 44.5
TAR374G0010 Trochodendron aralioides HOM05D004501 ORTHO05D004944 1.2e-151 541.6 372 72.0
SMO356G0217 Selaginella moellendorffii HOM05D004501 ORTHO05D004944 5.6e-146 522.7 595 46.9
Pp3c24_4970 Physcomitrium patens HOM05D004501 ORTHO05D004944 2.2e-142 510.8 624 46.6
Pp3c10_5410 Physcomitrium patens HOM05D004501 ORTHO05D004944 3.7e-142 510.0 625 45.6
TAR374G0951 Trochodendron aralioides HOM05D004501 ORTHO05D004944 2.1e-121 441.0 542 48.9
Cpa.g.sc776.4 Carica papaya HOM05D004501 ORTHO05D004944 2.3e-115 421.0 286 73.4
unitig_0.g1052 Utricularia gibba HOM05D004501 ORTHO05D004944 3.5e-108 397.1 619 39.7
CBR_g20363 Chara braunii HOM05D004501 ORTHO05D004944 1.8e-104 384.8 653 36.6
AagrBONN_evm.TU.Sc2ySwM_368.3343 Anthoceros agrestis HOM05D004501 ORTHO05D004944 1.7e-102 378.3 483 45.1
MD06G1054400 Malus domestica HOM05D004501 ORTHO05D004944 2.0e-90 338.2 204 85.3
HanXRQChr15g0495741 Helianthus annuus HOM05D004501 ORTHO05D004944 3.7e-73 280.8 256 60.2
C04p07690 Brassica napus HOM05D004501 ORTHO05D004944 4.0e-67 260.8 372 43.0
BolC4t22385H Brassica oleracea HOM05D004501 ORTHO05D004944 7.0e-64 250.0 236 52.1
CSS0028018 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 6.8e-59 233.4 137 81.0
SHI29866 Sapria himalayana HOM05D004501 ORTHO05D004944 7.7e-55 219.9 198 59.6
DCAR_020177 Daucus carota HOM05D004501 ORTHO05D004944 9.5e-53 213.0 144 71.5
CSS0011270 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 1.1e-48 199.5 137 72.3
Zm00001eb142020 Zea mays HOM05D004501 ORTHO05D004944 2.0e-47 195.3 173 59.5
CAN.G201.38 Capsicum annuum HOM05D004501 ORTHO05D004944 2.3e-46 191.8 312 41.0
BolC4t22386H Brassica oleracea HOM05D004501 ORTHO05D004944 3.3e-45 188.0 214 50.0
FAN04G2417 Fragaria x ananassa HOM05D004501 ORTHO05D004944 5.0e-38 164.1 95 84.2
CAN.G26.29 Capsicum annuum HOM05D004501 ORTHO05D004944 3.4e-34 151.4 196 49.0
PRCOL_00000429 Prasinoderma coloniale HOM05D004501 ORTHO05D004944 1.7e-33 149.1 551 25.8
Cpa.g.sc776.5 Carica papaya HOM05D004501 ORTHO05D004944 3.7e-33 147.9 94 72.3
CSS0007149 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 8.3e-33 146.7 94 75.5
Cpa.g.sc776.3 Carica papaya HOM05D004501 ORTHO05D004944 3.2e-32 144.8 304 36.5
Zm00001eb047720 Zea mays HOM05D004501 ORTHO05D004944 6.6e-30 137.1 94 69.1
GSVIVG01006616001 Vitis vinifera HOM05D004501 ORTHO05D004944 9.9e-26 123.2 80 76.2
MCO16G596 Micromonas commoda HOM05D004501 ORTHO05D004944 1.1e-21 109.8 545 24.4
Sed0019349 Sechium edule HOM05D004501 ORTHO05D004944 3.1e-19 101.7 79 58.2
BcaC02g12114 Brassica carinata HOM05D004501 ORTHO05D023925 2.0e-18 99.0 323 29.7
CSS0048159 Camellia sinensis var. sinensis HOM05D004501 ORTHO05D004944 3.9e-14 84.7 43 88.4
Zm00001eb333660 Zea mays HOM05D000230 ORTHO05D010966 2.2e-09 68.9 47 66.0
GSVIVG01006141001 Vitis vinifera HOM05D004501 ORTHO05D004944 1.3e-06 59.7 66 45.5


User provided reference genes

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