Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G271100 Prunus persica HOM05D006465 ORTHO05D008207 1.2e-79 299.7 142 100.0
MD07G1057500 Malus domestica HOM05D006465 ORTHO05D008207 2.1e-63 245.7 142 82.4
RcHm_v2.0_Chr6g0264391 Rosa chinensis HOM05D006465 ORTHO05D008207 4.5e-58 228.0 130 83.1
FvH4_2g08820 Fragaria vesca HOM05D006465 ORTHO05D008207 7.6e-58 227.3 134 82.1
FAN10G0435 Fragaria x ananassa HOM05D006465 ORTHO05D008207 7.6e-58 227.3 134 82.1
FAN15G0521 Fragaria x ananassa HOM05D006465 ORTHO05D008207 7.6e-58 227.3 134 82.1
Thecc.01G132600 Theobroma cacao HOM05D006465 ORTHO05D008207 1.0e-54 216.9 143 73.4
Ciclev10002814m.g Citrus clementina HOM05D006465 ORTHO05D008207 8.7e-54 213.8 143 71.3
CANSAT01G2296 Cannabis sativa HOM05D006465 ORTHO05D008207 2.5e-53 212.2 116 83.6
Potri.005G063100 Populus trichocarpa HOM05D006465 ORTHO05D008207 1.3e-52 209.9 140 72.1
CiPaw.04G082200 Carya illinoinensis HOM05D006465 ORTHO05D008207 1.6e-52 209.5 122 78.7
Glyma.06G153700 Glycine max HOM05D006465 ORTHO05D008207 3.7e-52 208.4 142 73.9
Dinv07122 Davidia involucrata HOM05D006465 ORTHO05D008207 1.4e-51 206.5 136 71.3
Duzib187G1992 Durio zibethinus HOM05D006465 ORTHO05D008207 1.4e-51 206.5 115 79.1
Psat5g062320 Pisum sativum HOM05D006465 ORTHO05D008207 1.8e-51 206.1 143 71.3
THA.LOC104800074 Tarenaya hassleriana HOM05D006465 ORTHO05D008207 2.4e-51 205.7 139 69.1
TWI79G1280 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 6.9e-51 204.1 115 78.3
TPR.G28231 Trifolium pratense HOM05D006465 ORTHO05D008207 9.1e-51 203.8 142 69.7
TAR381G0246 Trochodendron aralioides HOM05D006465 ORTHO05D008207 9.1e-51 203.8 119 76.5
Haze_25235 Corylus avellana HOM05D006465 ORTHO05D008207 2.0e-50 202.6 136 69.1
Lalb_Chr08g0238351 Lupinus albus HOM05D006465 ORTHO05D008207 2.0e-50 202.6 136 73.5
Medtr3g096320 Medicago truncatula HOM05D006465 ORTHO05D008207 2.6e-50 202.2 114 82.5
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 3.4e-50 201.8 125 74.4
GSVIVG01026483001 Vitis vinifera HOM05D006465 ORTHO05D008207 4.5e-50 201.4 114 77.2
Ca_16948_v3 Cicer arietinum L. HOM05D002517 ORTHO05D003040 5.9e-50 201.1 127 74.8
Ca_16968_v3 Cicer arietinum L. HOM05D006465 ORTHO05D008207 5.9e-50 201.1 127 74.8
Manes.03G123050 Manihot esculenta HOM05D006465 ORTHO05D008207 1.0e-49 200.3 133 70.7
PGR119G2011 Punica granatum HOM05D006465 ORTHO05D008207 1.3e-49 199.9 112 78.6
Phvul.009G150900 Phaseolus vulgaris HOM05D006465 ORTHO05D008207 2.2e-49 199.1 134 73.1
Hund23271 Selenicereus undatus HOM05D006465 ORTHO05D008207 2.9e-49 198.7 131 70.2
Sabra05G0052300 Salix brachista HOM05D006465 ORTHO05D008207 3.8e-49 198.4 126 73.0
A10p27930 Brassica napus HOM05D006465 ORTHO05D008207 5.0e-49 198.0 144 66.7
BolC3t12987H Brassica oleracea HOM05D006465 ORTHO05D008207 5.0e-49 198.0 132 72.0
Glyma.04G212600 Glycine max HOM05D006465 ORTHO05D008207 5.0e-49 198.0 116 78.4
A03p04100 Brassica napus HOM05D006465 ORTHO05D008207 6.5e-49 197.6 132 71.2
C03p04560 Brassica napus HOM05D006465 ORTHO05D008207 6.5e-49 197.6 132 72.0
BraA03t09753Z Brassica rapa HOM05D006465 ORTHO05D008207 6.5e-49 197.6 132 71.2
BcaB08g37219 Brassica carinata HOM05D006465 ORTHO05D008207 1.1e-48 196.8 126 73.8
BraA10t44842Z Brassica rapa HOM05D006465 ORTHO05D008207 1.4e-48 196.4 144 66.7
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.4e-48 196.4 111 78.4
Dinv24364 Davidia involucrata HOM05D006465 ORTHO05D008207 1.9e-48 196.1 124 74.2
FAN24G0187 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.9e-48 196.1 120 79.2
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 2.5e-48 195.7 111 77.5
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 2.5e-48 195.7 111 77.5
Atru.chr4.901 Acer truncatum HOM05D006465 ORTHO05D008207 7.2e-48 194.1 142 64.8
Lj4A839G53 Lonicera japonica HOM05D006465 ORTHO05D008207 7.2e-48 194.1 134 65.7
AL6G19700 Arabidopsis lyrata HOM05D006465 ORTHO05D008207 9.4e-48 193.7 146 65.8
Lj1g0025116 Lotus japonicus HOM05D006465 ORTHO05D008207 9.4e-48 193.7 142 67.6
AUR62003565 Chenopodium quinoa HOM05D006465 ORTHO05D008207 1.6e-47 193.0 131 67.9
Thhalv10014951m.g Eutrema salsugineum HOM05D006465 ORTHO05D008207 1.6e-47 193.0 146 65.1
Actinidia06618 Actinidia chinensis HOM05D006465 ORTHO05D008207 2.7e-47 192.2 131 67.9
EL10Ac6g15303 Beta vulgaris HOM05D006465 ORTHO05D008207 2.7e-47 192.2 131 70.2
TWI75G0808 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 2.7e-47 192.2 112 75.9
arahy.Tifrunner.gnm1.ann1.X6LXMM Arachis hypogaea HOM05D006465 ORTHO05D008207 4.6e-47 191.4 126 72.2
CSS0043698 Camellia sinensis var. sinensis HOM05D006465 ORTHO05D008207 4.6e-47 191.4 110 75.5
CARHR204090 Cardamine hirsuta HOM05D006465 ORTHO05D008207 6.1e-47 191.0 150 61.3
Lsat_1_v5_gn_9_25981 Lactuca sativa HOM05D006465 ORTHO05D008207 7.9e-47 190.7 135 65.9
Carub.0006s0786 Capsella rubella HOM05D006465 ORTHO05D008207 1.0e-46 190.3 146 63.7
AUR62017880 Chenopodium quinoa HOM05D006465 ORTHO05D008207 1.0e-46 190.3 131 67.2
CsaV3_2G018330 Cucumis sativus L. HOM05D006465 ORTHO05D008207 1.0e-46 190.3 131 70.2
Sp6g34010 Schrenkiella parvula HOM05D006465 ORTHO05D008207 1.0e-46 190.3 142 66.9
Sed0005537 Sechium edule HOM05D006465 ORTHO05D008207 1.0e-46 190.3 118 73.7
Hma1.2p1_0476F.1_g160840 Hydrangea macrophylla HOM05D006465 ORTHO05D008207 1.8e-46 189.5 127 67.7
AT5G09310 Arabidopsis thaliana HOM05D006465 ORTHO05D008207 2.3e-46 189.1 148 62.8
Nn5g28548 Nelumbo nucifera HOM05D006465 ORTHO05D008207 3.0e-46 188.7 116 71.6
HanXRQChr15g0491331 Helianthus annuus HOM05D006465 ORTHO05D008207 3.9e-46 188.3 112 75.0
vmacro12798 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 1.1e-45 186.8 114 70.2
Ah.02g121490 Amaranthus hybridus HOM05D006465 ORTHO05D008207 1.5e-45 186.4 139 61.9
arahy.Tifrunner.gnm1.ann1.Q2CXKS Arachis hypogaea HOM05D006465 ORTHO05D008207 1.5e-45 186.4 142 64.8
Sc07g0001830 Simmondsia chinensis HOM05D006465 ORTHO05D008207 1.5e-45 186.4 108 76.9
VMungo1309G0274 Vigna mungo HOM05D006465 ORTHO05D008207 2.0e-45 186.0 124 72.6
TAR625G1289 Trochodendron aralioides HOM05D006465 ORTHO05D008207 2.6e-45 185.7 116 71.6
Aqoxy5G02229 Aquilegia oxysepala HOM05D006465 ORTHO05D000054 4.4e-45 184.9 136 64.7
ClCG02G000500 Citrullus lanatus HOM05D006465 ORTHO05D008207 7.4e-45 184.1 118 73.7
Cc07_g18520 Coffea canephora HOM05D006465 ORTHO05D008207 3.7e-44 181.8 110 72.7
PSO170G5905 Papaver somniferum HOM05D006465 ORTHO05D008207 3.7e-44 181.8 111 73.9
FvH4_3g04510 Fragaria vesca HOM05D006465 ORTHO05D008207 2.4e-43 179.1 95 86.3
FAN11G3155 Fragaria x ananassa HOM05D006465 ORTHO05D008207 2.4e-43 179.1 95 87.4
PSO017G4081 Papaver somniferum HOM05D006465 ORTHO05D008207 2.4e-43 179.1 111 73.0
CDE04G1235 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 4.1e-43 178.3 115 65.2
QL10p043584 Quercus lobata HOM05D006465 ORTHO05D008207 4.1e-43 178.3 183 51.9
Sopen06g005870 Solanum pennellii HOM05D006465 ORTHO05D008207 4.1e-43 178.3 136 61.0
Peaxi162Scf00270g01115 Petunia axillaris HOM05D006465 ORTHO05D008207 9.1e-43 177.2 154 56.5
PGSC0003DMG400030138 Solanum tuberosum HOM05D006465 ORTHO05D008207 2.6e-42 175.6 150 56.7
ECA247G0944 Erigeron canadensis HOM05D006465 ORTHO05D008207 3.4e-42 175.3 127 63.8
CAN.G934.1 Capsicum annuum HOM05D006465 ORTHO05D008207 5.9e-42 174.5 142 56.3
Nitab4.5_0000181g0060 Nicotiana tabacum HOM05D006465 ORTHO05D008207 5.9e-42 174.5 150 57.3
Migut.L00880 Erythranthe guttata HOM05D006465 ORTHO05D008207 1.3e-41 173.3 123 63.4
MSTRG.3605 Avicennia marina HOM05D006465 ORTHO05D008207 3.8e-41 171.8 110 68.2
DCAR_014336 Daucus carota HOM05D006465 ORTHO05D008207 3.8e-41 171.8 108 66.7
Migut.L00965 Erythranthe guttata HOM05D006465 ORTHO05D008207 3.8e-41 171.8 123 63.4
Hund04414 Selenicereus undatus HOM05D006465 ORTHO05D008207 4.2e-40 168.3 184 50.0
HPP92_019397 Vanilla planifolia HOM05D006465 ORTHO05D008207 7.2e-40 167.5 119 64.7
MELO3C023238.2 Cucumis melo HOM05D006465 ORTHO05D008207 6.1e-39 164.5 160 55.6
unitig_88.g27767 Utricularia gibba HOM05D006465 ORTHO05D008207 1.8e-38 162.9 117 62.4
Oeu004242.1 Olea europaea HOM05D006465 ORTHO05D008207 6.7e-38 161.0 109 65.1
SGA_v2.0_scaffold19G08773 Striga asiatica HOM05D006465 ORTHO05D008207 8.8e-38 160.6 145 52.4
ATR0138G005 Amborella trichopoda HOM05D006465 ORTHO05D008207 2.6e-37 159.1 114 64.0
SalBow7G2903 Salvia bowleyana HOM05D006465 ORTHO05D008207 4.4e-37 158.3 125 58.4
Oeu050125.1 Olea europaea HOM05D006465 ORTHO05D008207 1.8e-35 152.9 109 63.3
Os01g0960000 Oryza sativa ssp. japonica HOM05D006465 ORTHO05D008207 3.1e-35 152.1 116 58.6
Zm00001eb362550 Zea mays HOM05D006465 ORTHO05D008207 2.0e-34 149.4 113 59.3
MD02G1262600 Malus domestica HOM05D006465 ORTHO05D008207 1.3e-33 146.7 89 78.7
AagrBONN_evm.TU.Sc2ySwM_117.2181 Anthoceros agrestis HOM05D006465 ORTHO05D008207 8.5e-33 144.1 120 53.3
Mapoly0113s0017 Marchantia polymorpha HOM05D006465 ORTHO05D008207 2.4e-27 125.9 111 47.7
Pp3c15_3010 Physcomitrium patens HOM05D006465 ORTHO05D008207 7.7e-26 120.9 102 52.9
SMO367G0154 Selaginella moellendorffii HOM05D006465 ORTHO05D008207 5.7e-21 104.8 112 42.9
SEGI_17702 Sequoiadendron giganteum HOM05D006465 ORTHO05D008207 2.2e-20 102.8 96 51.0
Potri.007G106200 Populus trichocarpa HOM05D006465 ORTHO05D008207 3.7e-20 102.1 89 59.6
CDE12G0205 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 7.0e-19 97.8 63 63.5
Solyc06g016760.3 Solanum lycopersicum HOM05D006465 ORTHO05D008207 4.5e-18 95.1 107 50.5
Lalb_Chr11g0068481 Lupinus albus HOM05D006465 ORTHO05D008207 4.2e-16 88.6 53 79.2
Cc00_g19040 Coffea canephora HOM05D006465 ORTHO05D008207 9.5e-16 87.4 49 79.6
vmacro20733 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 3.6e-15 85.5 51 70.6
Rhsim10G0133300 Rhododendron simsii HOM05D006465 ORTHO05D008207 4.7e-15 85.1 51 70.6
CBR_g29852 Chara braunii HOM05D006465 ORTHO05D008207 1.8e-14 83.2 114 36.0
Lj4A838T21 Lonicera japonica HOM05D006465 ORTHO05D008207 3.0e-14 82.4 51 68.6
Cc00_g31500 Coffea canephora HOM05D006465 ORTHO05D008207 4.0e-14 82.0 48 75.0
Lalb_Chr11g0068471 Lupinus albus HOM05D006465 ORTHO05D008207 1.2e-13 80.5 48 75.0
Eucgr.I00202 Eucalyptus grandis HOM05D006465 ORTHO05D008207 5.7e-13 78.2 50 68.0
BolC9t59563H Brassica oleracea HOM05D006465 ORTHO05D008207 8.3e-12 74.3 45 71.1


User provided reference genes

Program Settings