Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 0.0e+00 1282.7 659 100.0
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 5.3e-303 1043.9 652 82.5
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.6e-296 1022.3 652 79.3
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 4.8e-296 1020.8 652 79.8
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 4.2e-292 1007.7 652 78.4
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 5.5e-292 1007.3 652 78.4
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 2.3e-282 975.3 652 76.8
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 7.9e-275 950.3 653 73.8
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 6.3e-272 940.6 653 73.4
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 1.6e-262 909.4 656 71.0
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 4.5e-262 907.9 654 71.1
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 1.5e-260 902.9 655 69.9
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 3.6e-259 898.3 651 70.2
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 4.7e-259 897.9 651 68.8
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.2e-257 893.3 649 68.9
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 2.0e-257 892.5 654 69.3
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 4.8e-256 887.9 654 69.7
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 8.2e-256 887.1 649 68.4
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 1.1e-255 886.7 649 68.9
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 4.1e-255 884.8 653 70.1
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 3.5e-254 881.7 652 67.8
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 2.2e-253 879.0 656 68.9
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 6.5e-253 877.5 652 68.9
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 8.5e-253 877.1 652 67.9
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 4.2e-252 874.8 653 69.1
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 9.4e-252 873.6 650 66.8
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 3.4e-249 865.1 655 66.9
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 7.5e-249 864.0 651 67.0
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 6.3e-248 860.9 654 66.1
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 1.2e-246 856.7 652 66.3
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 1.6e-246 856.3 654 65.0
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 2.0e-246 855.9 653 65.7
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 6.6e-245 850.9 654 67.9
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 1.5e-244 849.7 656 67.4
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 1.9e-244 849.4 652 66.1
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 4.2e-244 848.2 651 65.7
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 1.6e-243 846.3 651 65.1
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 1.6e-243 846.3 656 65.1
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 2.1e-243 845.9 653 65.8
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 8.0e-243 844.0 651 66.4
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 4.0e-242 841.6 652 65.2
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 6.8e-242 840.9 651 64.5
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 5.7e-241 837.8 652 65.0
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 7.5e-241 837.4 656 66.2
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 9.8e-241 837.0 652 65.8
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 2.8e-240 835.5 655 66.9
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 5.6e-236 821.2 654 64.1
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 4.7e-235 818.1 656 63.0
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 1.4e-234 816.6 651 64.2
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 3.0e-234 815.5 654 63.6
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 3.0e-234 815.5 654 63.9
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 8.9e-234 813.9 659 64.6
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 4.9e-232 808.1 655 62.7
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 6.4e-232 807.7 658 64.0
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 1.2e-230 803.5 665 62.4
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 1.3e-229 800.0 657 62.4
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 6.6e-229 797.7 658 61.9
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 2.5e-228 795.8 652 62.0
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 1.6e-227 793.1 652 62.0
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 2.1e-227 792.7 654 62.5
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 1.1e-226 790.4 651 61.1
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 4.0e-226 788.5 651 61.8
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 4.0e-226 788.5 659 60.7
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 1.5e-225 786.6 676 60.1
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 2.6e-225 785.8 641 63.3
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 4.4e-225 785.0 630 62.9
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 1.3e-224 783.5 656 61.6
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 1.7e-224 783.1 649 62.4
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 2.9e-224 782.3 655 61.8
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 6.4e-224 781.2 656 61.4
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 9.2e-223 777.3 654 60.7
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 7.8e-222 774.2 654 60.1
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 2.3e-221 772.7 656 60.2
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 6.6e-221 771.2 659 60.2
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 6.6e-221 771.2 664 60.4
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 2.3e-218 762.7 656 60.1
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 5.8e-217 758.1 654 59.6
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 5.8e-217 758.1 655 59.4
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 8.3e-216 754.2 654 59.3
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 1.9e-215 753.1 654 59.5
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 3.2e-215 752.3 654 59.3
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 4.6e-214 748.4 655 59.8
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 1.7e-213 746.5 657 59.4
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 1.7e-213 746.5 657 59.4
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 5.8e-209 731.5 655 56.2
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 5.8e-209 731.5 652 58.1
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 1.3e-208 730.3 665 57.1
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 1.1e-207 727.2 644 61.5
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 1.0e-205 720.7 654 56.1
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 1.7e-205 719.9 657 57.7
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 4.7e-203 711.8 655 56.6
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 1.4e-199 700.3 652 58.0
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 5.4e-199 698.4 514 70.8
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 1.3e-195 687.2 656 55.5
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 9.0e-194 681.0 686 52.9
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 8.7e-189 664.5 657 55.6
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 4.3e-188 662.1 663 52.3
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 3.8e-184 649.0 662 52.7
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 8.4e-184 647.9 488 67.2
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 9.4e-143 511.5 519 52.0
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 1.4e-138 497.7 420 60.5
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 3.6e-134 483.0 359 68.0
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 2.3e-133 480.3 619 47.2
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 6.3e-131 472.2 364 64.6
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 8.3e-131 471.9 486 52.7
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 2.3e-120 437.2 665 37.6
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 9.5e-111 405.2 654 36.7
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 2.6e-100 370.5 661 34.5
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 1.4e-90 338.2 269 63.2
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 1.4e-90 338.2 368 48.6
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 9.3e-90 335.5 283 60.8
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 8.7e-88 328.9 509 39.1
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 3.3e-87 327.0 270 65.2
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 1.3e-75 288.5 229 68.1
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 3.8e-75 287.0 761 29.8
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 1.4e-69 268.5 358 41.9
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 7.4e-63 246.1 718 28.4
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 1.7e-59 235.0 270 48.5
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 9.1e-45 186.0 128 76.6
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 1.7e-35 155.2 82 85.4
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 5.3e-29 133.7 220 34.5
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.6e-25 120.9 101 51.5
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 3.4e-23 114.4 99 61.6
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 4.4e-23 114.0 86 54.7
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 1.1e-21 109.4 212 31.1
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.8e-21 108.6 104 56.7
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 9.1e-21 106.3 76 69.7
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 3.5e-20 104.4 215 34.9
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 7.2e-18 96.7 319 27.6
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 2.1e-17 95.1 156 35.3
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 3.6e-17 94.4 62 75.8
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 4.4e-15 87.4 95 49.5
RcHm_v2.0_Chr6g0291761 Rosa chinensis HOM05D005402 ORTHO05D007036 5.7e-15 87.0 73 60.3
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.8e-14 84.7 68 63.2
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 6.3e-14 83.6 95 45.3
RcHm_v2.0_Chr0c11g0499491 Rosa chinensis HOM05D005402 ORTHO05D348090 9.8e-07 59.7 48 66.7


User provided reference genes

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