Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 0.0e+00 1349.0 680 100.0
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 2.9e-227 792.3 743 59.6
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 3.5e-217 758.8 724 59.7
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 6.2e-206 721.5 715 56.9
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 6.4e-203 711.4 804 52.7
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.4e-194 682.9 707 55.4
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 4.6e-185 652.1 660 53.5
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 5.6e-183 645.2 748 51.5
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 3.1e-181 639.4 667 54.1
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 9.0e-173 611.3 636 52.7
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 5.9e-164 582.0 653 51.6
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 3.8e-163 579.3 662 51.4
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 3.3e-159 566.2 661 49.8
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 1.7e-158 563.9 663 49.2
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.3e-155 554.3 663 48.1
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 3.7e-150 536.2 679 46.4
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.1e-149 534.6 662 46.8
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 3.1e-149 533.1 662 46.7
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 7.0e-149 531.9 662 46.4
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 1.0e-147 528.1 632 48.3
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 6.1e-145 518.8 667 47.1
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 6.1e-145 518.8 661 45.8
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.3e-144 516.9 673 48.4
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.5e-143 514.2 667 47.1
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.0e-140 503.8 663 44.9
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 1.1e-138 498.0 656 44.1
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 3.2e-138 496.5 664 46.2
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 3.1e-133 479.9 659 43.2
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 7.0e-133 478.8 647 43.6
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 2.0e-132 477.2 663 45.1
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 4.5e-132 476.1 661 44.2
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 3.8e-131 473.0 661 44.0
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 1.5e-130 471.1 661 42.7
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 1.6e-129 467.6 665 43.0
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 4.0e-128 463.0 647 42.5
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 5.2e-128 462.6 685 43.9
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 5.2e-128 462.6 649 42.8
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 3.4e-127 459.9 664 44.3
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 9.8e-127 458.4 665 42.7
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 1.3e-126 458.0 668 42.2
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 2.2e-126 457.2 678 44.0
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 7.0e-125 452.2 662 44.4
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 5.0e-123 446.0 661 42.2
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.1e-122 444.9 655 42.6
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 2.5e-122 443.7 662 42.3
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.2e-121 441.4 521 51.2
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.2e-121 441.4 663 40.4
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 3.6e-121 439.9 666 41.0
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 6.8e-120 435.6 675 40.3
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 6.8e-120 435.6 661 42.4
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 8.9e-120 435.3 663 41.2
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 3.4e-119 433.3 651 40.6
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 5.7e-119 432.6 647 42.7
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 1.8e-117 427.6 663 41.0
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 1.2e-116 424.9 659 42.5
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 1.6e-116 424.5 652 41.0
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 1.6e-113 414.5 659 41.3
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 4.0e-112 409.8 595 42.9
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 1.5e-111 407.9 651 38.7
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 1.1e-106 391.7 611 40.6
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 2.5e-106 390.6 654 39.0
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.6e-105 386.7 644 37.6
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 4.7e-105 386.3 674 37.4
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.1e-104 385.2 658 37.7
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 1.4e-104 384.8 658 37.7
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 1.8e-104 384.4 664 37.7
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 5.2e-104 382.9 578 42.0
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.2e-103 381.7 631 39.0
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 4.4e-103 379.8 658 36.2
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 5.8e-103 379.4 658 37.5
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.2e-102 377.5 658 36.2
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 5.4e-101 372.9 658 35.6
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 2.7e-100 370.5 660 38.0
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 6.0e-100 369.4 645 37.8
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 1.7e-99 367.9 658 39.2
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 6.2e-97 359.4 663 37.3
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 8.1e-97 359.0 662 37.2
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 3.1e-96 357.1 661 37.7
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 6.8e-96 355.9 669 38.1
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 9.9e-95 352.1 654 36.4
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 2.9e-94 350.5 656 36.1
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 1.9e-93 347.8 604 38.7
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 7.1e-93 345.9 633 36.7
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 3.5e-92 343.6 633 36.7
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.0e-91 342.0 666 35.7
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 1.0e-91 342.0 663 37.1
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 1.9e-90 337.8 612 39.4
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 7.3e-90 335.9 676 34.3
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 8.9e-88 328.9 614 36.2
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 3.4e-87 327.0 650 35.2
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 2.5e-82 310.8 606 37.0
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.3e-78 298.5 664 32.1
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 2.1e-76 291.2 641 33.5
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.5e-76 290.4 506 39.7
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 7.8e-76 289.3 664 31.9
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.3e-75 288.5 665 30.5
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 4.5e-71 273.5 580 32.2
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 5.8e-71 273.1 670 32.1
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 3.2e-69 267.3 648 30.1
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 1.5e-66 258.5 675 29.3
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 3.3e-66 257.3 573 34.0
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 9.6e-66 255.8 643 29.9
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 3.4e-63 247.3 658 30.5
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 4.2e-61 240.4 327 45.0
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 3.9e-59 233.8 567 33.9
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.7e-54 218.4 300 43.0
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 8.4e-54 216.1 247 46.2
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 3.5e-52 210.7 660 27.7
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 2.4e-48 198.0 216 45.8
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 9.0e-48 196.1 223 44.4
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.0e-47 194.9 213 45.1
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.3e-46 192.2 609 27.1
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 2.2e-46 191.4 213 44.6
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.2e-46 191.4 278 41.0
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 1.1e-45 189.1 214 43.9
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 7.2e-45 186.4 291 38.8
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 9.4e-45 186.0 217 42.9
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.4e-43 182.2 270 38.9
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 1.8e-43 181.8 258 39.5
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 3.0e-43 181.0 592 30.1
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 1.1e-42 179.1 643 27.1
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.1e-40 172.6 407 32.7
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.1e-40 172.6 541 29.2
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.4e-40 172.2 473 31.7
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 2.4e-40 171.4 101 74.3
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 1.1e-37 162.5 364 33.0
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 1.1e-37 162.5 155 45.8
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 3.2e-37 161.0 380 32.6
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 3.6e-36 157.5 364 32.4
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 2.3e-35 154.8 431 30.6
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 2.3e-35 154.8 366 32.2
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 2.3e-35 154.8 366 32.2
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 6.7e-35 153.3 103 65.0
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.1e-34 152.5 182 46.2
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 1.1e-34 152.5 474 31.0
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 2.0e-34 151.8 464 32.3
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 2.8e-33 147.9 488 30.1
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 2.8e-33 147.9 488 30.1
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 8.2e-33 146.4 573 25.3
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 2.0e-31 141.7 449 30.7
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 5.0e-30 137.1 304 31.9
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 7.2e-29 133.3 636 26.6
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 8.8e-27 126.3 177 38.4
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.1e-26 125.9 242 35.5
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 3.3e-26 124.4 651 22.3
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 8.2e-25 119.8 173 34.7
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 2.9e-22 111.3 391 28.1
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.0e-22 110.5 95 54.7
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 3.6e-12 77.8 125 33.6
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 6.1e-12 77.0 72 38.9
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.8e-11 75.5 70 47.1
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 9.1e-08 63.2 108 28.7
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 7.7e-07 60.1 61 34.4


User provided reference genes

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