Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 9.3e-193 676.8 361 100.0
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 4.2e-161 571.6 363 85.4
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 2.1e-160 569.3 369 84.3
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 7.2e-153 544.3 328 91.5
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 2.7e-152 542.3 361 80.9
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 7.0e-148 527.7 365 80.5
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 7.0e-148 527.7 384 77.9
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 1.2e-147 526.9 330 87.0
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 3.8e-146 521.9 364 79.4
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 5.7e-142 508.1 362 76.8
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 1.3e-141 506.9 361 77.6
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 1.3e-141 506.9 361 76.2
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 2.8e-141 505.8 361 77.3
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 8.2e-141 504.2 361 76.7
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 1.4e-140 503.4 365 76.2
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 1.8e-140 503.1 362 76.8
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.6e-139 500.0 363 74.4
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 2.2e-138 496.1 362 75.1
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 2.2e-138 496.1 362 75.1
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 6.5e-138 494.6 331 81.3
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 6.5e-138 494.6 362 75.1
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 8.5e-138 494.2 361 74.2
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 1.5e-137 493.4 361 74.0
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 4.2e-137 491.9 359 76.0
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 1.6e-136 490.0 363 75.8
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 2.1e-136 489.6 363 75.8
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 3.6e-136 488.8 363 76.0
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 3.0e-135 485.7 388 70.1
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 4.0e-135 485.3 351 76.9
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 6.8e-135 484.6 363 74.9
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 8.8e-135 484.2 362 73.8
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 1.2e-134 483.8 388 70.1
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 1.6e-131 473.4 328 77.7
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 1.6e-131 473.4 359 72.7
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 3.5e-131 472.2 363 73.0
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 7.2e-129 464.5 353 72.2
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 1.6e-128 463.4 363 73.6
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 2.7e-128 462.6 359 71.0
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 3.6e-128 462.2 363 73.0
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 4.7e-128 461.8 364 70.9
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 1.4e-127 460.3 363 72.5
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 4.0e-127 458.8 373 72.1
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 2.6e-126 456.1 263 90.9
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 2.6e-126 456.1 367 72.2
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 2.6e-126 456.1 367 71.4
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 4.4e-126 455.3 347 73.2
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 1.3e-125 453.8 315 78.1
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 1.3e-125 453.8 359 72.1
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 1.7e-125 453.4 362 71.5
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 3.7e-125 452.2 364 70.1
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 1.4e-124 450.3 299 81.6
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 2.4e-124 449.5 266 89.1
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 4.1e-124 448.7 314 78.0
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 9.2e-124 447.6 354 70.6
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 4.5e-123 445.3 267 86.9
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 4.5e-123 445.3 352 71.3
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 5.9e-123 444.9 354 69.8
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 7.7e-123 444.5 300 81.0
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 1.3e-122 443.7 364 71.7
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 2.9e-122 442.6 363 71.1
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 3.8e-122 442.2 358 71.5
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 3.8e-122 442.2 367 71.4
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 5.0e-122 441.8 363 68.0
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 1.5e-121 440.3 363 70.0
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 1.5e-121 440.3 283 83.0
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 4.3e-121 438.7 363 70.5
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 2.1e-120 436.4 290 80.0
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 2.1e-120 436.4 363 70.0
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 2.8e-120 436.0 318 74.2
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 3.6e-120 435.6 364 70.6
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 3.6e-120 435.6 366 70.2
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 8.0e-120 434.5 341 71.8
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 1.4e-119 433.7 357 70.3
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 1.4e-119 433.7 370 70.0
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 2.3e-119 433.0 332 75.9
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 3.0e-119 432.6 356 70.5
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 8.9e-119 431.0 337 70.3
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 1.5e-118 430.3 286 82.2
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 1.3e-117 427.2 391 66.8
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 1.3e-117 427.2 306 76.8
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 1.7e-117 426.8 293 79.2
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 3.7e-117 425.6 306 77.1
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 3.7e-117 425.6 293 77.5
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 4.9e-117 425.2 396 65.7
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 4.6e-115 418.7 283 79.5
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 2.3e-114 416.4 365 64.7
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 3.9e-114 415.6 314 75.5
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 8.9e-111 404.4 292 77.1
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 3.4e-110 402.5 325 68.9
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 1.3e-109 400.6 306 72.2
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 1.1e-108 397.5 304 73.0
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 1.4e-108 397.1 318 69.2
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 1.9e-108 396.7 270 78.9
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 1.1e-105 387.5 396 60.9
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 1.6e-104 383.6 396 60.6
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 3.4e-102 375.9 355 62.8
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 2.9e-101 372.9 328 67.1
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 1.1e-100 370.9 246 78.9
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 1.4e-100 370.5 260 75.8
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 2.5e-97 359.8 257 74.3
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 4.7e-96 355.5 226 85.0
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 9.9e-94 347.8 365 60.8
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 1.7e-93 347.1 253 71.9
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 9.2e-92 341.3 195 91.3
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 1.5e-89 334.0 240 76.7
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 6.2e-88 328.6 290 65.9
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 1.5e-86 323.9 291 64.3
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 7.3e-81 305.1 260 63.5
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 6.4e-77 292.0 297 58.9
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.8e-74 283.9 246 67.5
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 4.2e-68 262.7 244 58.6
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 9.3e-68 261.5 245 58.8
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 1.3e-61 241.1 258 57.4
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 2.2e-61 240.4 301 54.2
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 4.9e-61 239.2 281 51.6
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 7.4e-57 225.3 230 62.6
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 1.8e-55 220.7 207 63.8
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 2.5e-49 200.3 140 82.1
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 4.5e-46 189.5 135 76.3
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 2.6e-41 173.7 98 91.8
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 5.3e-39 166.0 204 57.4
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 5.9e-38 162.5 142 69.0
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 1.0e-34 151.8 93 84.9
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 9.7e-33 145.2 157 56.7
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 2.8e-32 143.7 157 56.1
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 8.2e-32 142.1 114 69.3
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 9.4e-20 102.1 80 67.5
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 1.7e-16 91.3 96 59.4
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 2.0e-14 84.3 60 76.7
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 1.1e-12 78.6 225 32.9
RcHm_v2.0_Chr5g0035691 Rosa chinensis HOM05D005990 ORTHO05D347831 6.1e-11 72.8 83 57.8
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 1.5e-09 68.2 47 76.6
MBI07_g21055_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022192 3.5e-06 57.0 41 70.7
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 4.5e-06 56.6 29 100.0


User provided reference genes

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