Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G184800 Prunus persica HOM05D006220 ORTHO05D007590 3.1e-187 659.1 560 100.0
RcHm_v2.0_Chr5g0034391 Rosa chinensis HOM05D006220 ORTHO05D007590 1.2e-143 514.2 583 82.7
Cfa020552 Carpinus fangiana HOM05D006220 ORTHO05D007590 4.0e-134 482.6 583 77.9
Thecc.07G079000 Theobroma cacao HOM05D006220 ORTHO05D007590 5.8e-125 452.2 583 75.3
MD00G1090000 Malus domestica HOM05D006220 ORTHO05D007590 2.2e-124 450.3 557 80.1
MD11G1243700 Malus domestica HOM05D006220 ORTHO05D007590 6.6e-121 438.7 587 65.9
GSVIVG01014371001 Vitis vinifera HOM05D006220 ORTHO05D007590 2.1e-119 433.7 583 74.8
TWI38G2391 Tripterygium wilfordii HOM05D006220 ORTHO05D007590 4.7e-119 432.6 583 75.0
Gohir.A13G145200 Gossypium hirsutum HOM05D006220 ORTHO05D007590 1.4e-118 431.0 583 72.0
COL.COLO4_09426 Corchorus olitorius HOM05D006220 ORTHO05D007590 2.3e-118 430.3 581 75.6
HanXRQChr03g0078511 Helianthus annuus HOM05D006220 ORTHO05D007590 3.4e-117 426.4 581 73.7
CSS0010017 Camellia sinensis var. sinensis HOM05D006220 ORTHO05D007590 9.9e-117 424.9 583 73.6
Hund22942 Selenicereus undatus HOM05D006220 ORTHO05D007590 9.9e-117 424.9 581 72.6
Hma1.2p1_0148F.1_g066160 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.4e-115 421.0 583 75.1
Gorai.013G167800 Gossypium raimondii HOM05D006220 ORTHO05D007590 3.0e-113 413.3 583 71.5
Sed0021838 Sechium edule HOM05D006220 ORTHO05D007590 3.3e-112 409.8 581 73.1
Gohir.D13G150000 Gossypium hirsutum HOM05D006220 ORTHO05D007590 4.3e-112 409.5 583 71.2
MELO3C016523.2 Cucumis melo HOM05D006220 ORTHO05D007590 1.1e-110 404.8 583 70.3
PGR031G1387 Punica granatum HOM05D006220 ORTHO05D007590 2.4e-110 403.7 581 71.8
Sp3g13670 Schrenkiella parvula HOM05D006220 ORTHO05D007590 3.1e-110 403.3 583 67.8
THA.LOC104810484 Tarenaya hassleriana HOM05D006220 ORTHO05D007590 6.8e-110 402.1 581 72.8
CsaV3_3G006190 Cucumis sativus L. HOM05D006220 ORTHO05D007590 8.9e-110 401.7 583 69.1
Lalb_Chr20g0109761 Lupinus albus HOM05D006220 ORTHO05D007590 4.9e-108 396.0 583 71.7
arahy.Tifrunner.gnm1.ann1.LU5I8Y Arachis hypogaea HOM05D006220 ORTHO05D007590 1.9e-107 394.0 589 67.9
FAN25G1684 Fragaria x ananassa HOM05D006220 ORTHO05D007590 7.1e-107 392.1 584 74.1
Manes.03G112900 Manihot esculenta HOM05D006220 ORTHO05D007590 1.2e-106 391.3 583 70.0
Duzib213G0302 Durio zibethinus HOM05D006220 ORTHO05D007590 1.6e-106 391.0 505 80.6
ECA240G2314 Erigeron canadensis HOM05D006220 ORTHO05D007590 3.5e-106 389.8 581 70.9
FAN11G1997 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.2e-103 381.3 598 67.1
Cc05_g12250 Coffea canephora HOM05D006220 ORTHO05D007590 6.2e-103 379.0 583 70.3
FvH4_3g20490 Fragaria vesca HOM05D006220 ORTHO05D007590 1.4e-102 377.9 584 72.9
Nitab4.5_0000207g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 9.0e-102 375.2 593 61.6
FAN16G3027 Fragaria x ananassa HOM05D006220 ORTHO05D007590 1.2e-101 374.8 584 72.9
DCAR_017149 Daucus carota HOM05D006220 ORTHO05D007590 2.6e-101 373.6 515 78.6
SGA_v2.0_scaffold9G04934 Striga asiatica HOM05D006220 ORTHO05D007590 3.2e-99 366.7 600 68.7
Zm00001eb259320 Zea mays HOM05D006220 ORTHO05D007590 3.2e-99 366.7 581 69.0
AUR62029364 Chenopodium quinoa HOM05D006220 ORTHO05D007590 4.2e-99 366.3 588 53.2
Actinidia05212 Actinidia chinensis HOM05D006220 ORTHO05D007590 7.1e-99 365.5 583 69.5
CAN.G1110.52 Capsicum annuum HOM05D006220 ORTHO05D007590 2.1e-98 364.0 583 66.6
arahy.Tifrunner.gnm1.ann1.BQ9KJC Arachis hypogaea HOM05D006220 ORTHO05D007590 2.7e-98 363.6 589 66.0
AL3G27960 Arabidopsis lyrata HOM05D006220 ORTHO05D007590 3.9e-97 359.8 581 66.4
Carub.0003s1514 Capsella rubella HOM05D006220 ORTHO05D007590 3.9e-97 359.8 581 66.6
Ciclev10007835m.g Citrus clementina HOM05D006220 ORTHO05D007590 2.5e-96 357.1 583 69.3
AT3G15410 Arabidopsis thaliana HOM05D006220 ORTHO05D007590 5.6e-96 355.9 581 65.2
Os02g0826600 Oryza sativa ssp. japonica HOM05D006220 ORTHO05D007590 5.6e-96 355.9 583 65.0
BcaB06g29573 Brassica carinata HOM05D006220 ORTHO05D007590 9.6e-96 355.1 583 63.8
CANSAT56G4311 Cannabis sativa HOM05D006220 ORTHO05D007590 1.6e-95 354.4 583 66.6
Glyma.13G278800 Glycine max HOM05D006220 ORTHO05D007590 4.8e-95 352.8 583 69.1
Lsat_1_v5_gn_9_97140 Lactuca sativa HOM05D006220 ORTHO05D007590 4.8e-95 352.8 543 65.0
Sabra11G0107700 Salix brachista HOM05D006220 ORTHO05D007590 6.2e-95 352.4 683 62.7
Solyc10g006930.4 Solanum lycopersicum HOM05D006220 ORTHO05D007590 8.1e-95 352.1 583 65.4
Sopen10g002840 Solanum pennellii HOM05D006220 ORTHO05D007590 1.1e-94 351.7 583 65.5
TPR.G38952 Trifolium pratense HOM05D006220 ORTHO05D007590 1.4e-94 351.3 596 64.1
HPP92_022050 Vanilla planifolia HOM05D006220 ORTHO05D007590 1.4e-94 351.3 586 65.7
ClCG10G006830 Citrullus lanatus HOM05D006220 ORTHO05D007590 2.4e-94 350.5 539 72.0
Lj3g0017554 Lotus japonicus HOM05D006220 ORTHO05D007590 5.3e-94 349.4 585 67.7
AUR62034280 Chenopodium quinoa HOM05D006220 ORTHO05D007590 9.0e-94 348.6 579 57.3
Migut.H01927 Erythranthe guttata HOM05D006220 ORTHO05D007590 1.5e-93 347.8 583 68.3
Thhalv10020366m.g Eutrema salsugineum HOM05D006220 ORTHO05D007590 3.4e-93 346.7 583 63.5
Potri.011G121700 Populus trichocarpa HOM05D006220 ORTHO05D007590 8.4e-92 342.0 583 69.3
CARHR090460 Cardamine hirsuta HOM05D006220 ORTHO05D007590 1.4e-91 341.3 581 65.1
BraA05t22221Z Brassica rapa HOM05D006220 ORTHO05D007590 3.2e-91 340.1 589 62.6
Atru.chr2.2718 Acer truncatum HOM05D006220 ORTHO05D007590 4.2e-91 339.7 583 68.1
Eucgr.F03334 Eucalyptus grandis HOM05D006220 ORTHO05D007590 4.2e-91 339.7 581 67.0
TAR626G0245 Trochodendron aralioides HOM05D006220 ORTHO05D007590 5.4e-91 339.3 564 70.9
Aqoxy4G01032 Aquilegia oxysepala HOM05D006220 ORTHO05D007590 4.6e-90 336.3 582 68.6
Psat5g245040 Pisum sativum HOM05D006220 ORTHO05D007590 2.5e-88 330.5 584 68.3
Oeu008016.1 Olea europaea HOM05D006220 ORTHO05D007590 5.6e-88 329.3 316 60.1
Cpa.g.sc80.40 Carica papaya HOM05D006220 ORTHO05D007590 1.3e-87 328.2 590 62.5
Sc16g0006920 Simmondsia chinensis HOM05D006220 ORTHO05D007590 1.3e-87 328.2 519 70.7
Rhsim06G0196800 Rhododendron simsii HOM05D006220 ORTHO05D007590 8.1e-87 325.5 599 65.4
BolC5t33860H Brassica oleracea HOM05D006220 ORTHO05D007590 1.8e-86 324.3 589 61.1
CDE05G0932 Ceratophyllum demersum HOM05D006220 ORTHO05D007590 1.8e-86 324.3 585 66.7
Glyma.12G222700 Glycine max HOM05D006220 ORTHO05D007590 4.0e-86 323.2 584 64.2
MSTRG.14365 Avicennia marina HOM05D006220 ORTHO05D007590 1.2e-85 321.6 583 63.0
VMungo1080G0525 Vigna mungo HOM05D006220 ORTHO05D007590 2.0e-85 320.9 562 69.0
PSO210G4054 Papaver somniferum HOM05D006220 ORTHO05D007590 2.6e-85 320.5 583 66.9
Medtr2g079560 Medicago truncatula HOM05D006220 ORTHO05D007590 1.9e-83 314.3 563 68.0
Nn1g06599 Nelumbo nucifera HOM05D006220 ORTHO05D007590 2.4e-83 313.9 628 62.9
Phvul.005G083000 Phaseolus vulgaris HOM05D006220 ORTHO05D007590 7.4e-80 302.4 586 65.7
Dinv08311 Davidia involucrata HOM05D006220 ORTHO05D007590 2.1e-79 300.8 417 62.6
A05p33990 Brassica napus HOM05D006220 ORTHO05D007590 3.7e-79 300.1 563 60.2
Hma1.2p1_0148F.1_g066170 Hydrangea macrophylla HOM05D006220 ORTHO05D007590 1.8e-78 297.7 327 77.1
BcaC05g29008 Brassica carinata HOM05D006220 ORTHO05D007590 5.3e-78 296.2 562 60.9
Haze_09468 Corylus avellana HOM05D006220 ORTHO05D007590 5.3e-78 296.2 222 71.6
Nitab4.5_0001320g0170 Nicotiana tabacum HOM05D006220 ORTHO05D007590 7.6e-77 292.4 313 58.1
ATR0680G100 Amborella trichopoda HOM05D006220 ORTHO05D007590 1.3e-76 291.6 583 66.4
Aa31LG8G2650 Aethionema arabicum HOM05D006220 ORTHO05D007590 2.9e-76 290.4 641 53.5
CiPaw.11G172800 Carya illinoinensis HOM05D006220 ORTHO05D007590 3.2e-75 287.0 446 77.4
Peaxi162Scf00027g02813 Petunia axillaris HOM05D006220 ORTHO05D007590 1.2e-74 285.0 561 64.9
MBI17_g46353_MAGBIO Magnolia biondii HOM05D006220 ORTHO05D007590 6.0e-74 282.7 364 60.2
unitig_26.g9535 Utricularia gibba HOM05D006220 ORTHO05D007590 1.9e-72 277.7 558 42.5
PSO832G1845 Papaver somniferum HOM05D006220 ORTHO05D007590 3.7e-71 273.5 583 63.8
EL10Ac4g08136 Beta vulgaris HOM05D006220 ORTHO05D007590 1.7e-68 264.6 562 58.4
SalBow7G3592 Salvia bowleyana HOM05D006220 ORTHO05D007590 5.0e-68 263.1 558 54.7
vmacro11856 Vaccinium macrocarpon HOM05D006220 ORTHO05D007590 5.5e-67 259.6 586 60.2
Mapoly0029s0091 Marchantia polymorpha HOM05D006220 ORTHO05D007590 7.2e-67 259.2 589 61.3
MD11G1243500 Malus domestica HOM05D006220 ORTHO05D007590 7.9e-66 255.8 197 69.0
AagrBONN_evm.TU.Sc2ySwM_362.1464 Anthoceros agrestis HOM05D006220 ORTHO05D007590 5.7e-64 249.6 590 54.7
C05p51740 Brassica napus HOM05D006220 ORTHO05D007590 3.1e-62 243.8 518 62.0
Pp3c6_15930 Physcomitrium patens HOM05D006220 ORTHO05D007590 1.9e-59 234.6 593 55.0
FAN11G3846 Fragaria x ananassa HOM05D000189 ORTHO05D007610 7.7e-53 212.6 150 74.7
Lj1A847G19 Lonicera japonica HOM05D006220 ORTHO05D007590 2.9e-52 210.7 543 60.0
SMO200G0168 Selaginella moellendorffii HOM05D006220 ORTHO05D007590 4.5e-45 186.8 583 55.4
arahy.Tifrunner.gnm1.ann1.XCJ8AH Arachis hypogaea HOM05D006220 ORTHO05D007590 1.2e-40 172.2 251 54.6
Gohir.1Z049312 Gossypium hirsutum HOM05D006220 ORTHO05D007590 4.1e-38 163.7 121 67.8
CBR_g29878 Chara braunii HOM05D006220 ORTHO05D007590 2.0e-32 144.8 250 36.4
Lsat_1_v5_gn_9_85500 Lactuca sativa HOM05D006220 ORTHO05D007590 2.2e-31 141.4 113 63.7
Cc05_g12270 Coffea canephora HOM05D006220 ORTHO05D007590 3.6e-26 124.0 166 42.8
Cc05_g12290 Coffea canephora HOM05D006220 ORTHO05D007590 3.6e-26 124.0 166 42.8
Cc05_g12300 Coffea canephora HOM05D006220 ORTHO05D007590 3.6e-26 124.0 166 42.8
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 1.4e-22 112.1 80 68.8
Sabra11G0106700 Salix brachista HOM05D006220 ORTHO05D007590 7.0e-22 109.8 74 71.6
Sabra11G0107000 Salix brachista HOM05D006220 ORTHO05D007590 7.0e-22 109.8 74 71.6
Sabra11G0105900 Salix brachista HOM05D006220 ORTHO05D007590 9.2e-22 109.4 74 71.6
Nitab4.5_0001320g0180 Nicotiana tabacum HOM05D006220 ORTHO05D007590 3.5e-21 107.5 97 58.8
Sabra11G0105600 Salix brachista HOM05D006220 ORTHO05D007590 4.5e-21 107.1 74 70.3
HPP92_027622 Vanilla planifolia HOM05D006220 ORTHO05D007590 1.0e-20 105.9 74 67.6
Thecc.07G078400 Theobroma cacao HOM05D006220 ORTHO05D007590 1.6e-18 98.6 100 56.0
MCO03G083 Micromonas commoda HOM05D006220 ORTHO05D007590 1.0e-17 95.9 298 29.5
Haze_09464 Corylus avellana HOM05D006220 ORTHO05D007590 2.0e-16 91.7 51 84.3
Sc13g0008670 Simmondsia chinensis HOM05D006220 ORTHO05D007590 1.3e-15 89.0 98 50.0
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.4e-14 85.5 74 52.7
Cre01.g054100 Chlamydomonas reinhardtii HOM05D006220 ORTHO05D007590 1.4e-14 85.5 236 33.1
HanXRQChr09g0260971 Helianthus annuus HOM05D006220 ORTHO05D007590 7.0e-14 83.2 59 64.4
Atru.chr2.2722 Acer truncatum HOM05D006220 ORTHO05D017154 2.3e-12 78.2 133 40.6
Gorai.009G385200 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.6e-10 72.0 169 32.5
Gohir.A04G033300 Gossypium hirsutum HOM05D000101 ORTHO05D000089 2.8e-10 71.2 172 32.0
Gohir.D05G351100 Gossypium hirsutum HOM05D000101 ORTHO05D000089 4.7e-10 70.5 169 33.7
Gorai.009G381300 Gossypium raimondii HOM05D000101 ORTHO05D000089 4.7e-10 70.5 169 33.7
Gohir.D05G349700 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.1e-09 69.3 155 31.6
Gorai.009G379600 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.4e-09 68.9 155 31.6
Gorai.009G380200 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.4e-09 68.9 155 31.6
Thecc.07G078700 Theobroma cacao HOM05D006220 ORTHO05D007590 1.8e-09 68.6 104 42.3
Gohir.D05G350400 Gossypium hirsutum HOM05D000101 ORTHO05D000089 3.1e-09 67.8 173 31.2
Gohir.D05G353400 Gossypium hirsutum HOM05D000101 ORTHO05D000089 5.2e-09 67.0 188 31.4
Duzib268G1572 Durio zibethinus HOM05D000101 ORTHO05D000089 8.9e-09 66.2 170 33.5
Gorai.009G387600 Gossypium raimondii HOM05D000101 ORTHO05D000089 1.5e-08 65.5 188 30.9
Gohir.A04G033550 Gossypium hirsutum HOM05D000101 ORTHO05D000089 2.0e-08 65.1 224 31.2
Gorai.009G379700 Gossypium raimondii HOM05D000101 ORTHO05D000089 2.0e-08 65.1 169 31.4
Gorai.009G379900 Gossypium raimondii HOM05D000101 ORTHO05D000089 3.4e-08 64.3 167 29.9
Ciclev10024845m.g Citrus clementina HOM05D000101 ORTHO05D000089 4.4e-08 63.9 196 32.1
Gohir.D05G349800 Gossypium hirsutum HOM05D000101 ORTHO05D000089 4.4e-08 63.9 169 31.4
Gohir.D05G353800 Gossypium hirsutum HOM05D000101 ORTHO05D000089 4.4e-08 63.9 155 31.6
Gohir.D05G354400 Gossypium hirsutum HOM05D000101 ORTHO05D000089 5.8e-08 63.5 204 30.9
Gohir.D05G355200 Gossypium hirsutum HOM05D000101 ORTHO05D000089 5.8e-08 63.5 187 28.3
CSS0022045 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D000089 7.5e-08 63.2 215 29.3
Gohir.D05G355300 Gossypium hirsutum HOM05D000101 ORTHO05D000089 7.5e-08 63.2 188 30.3
Gorai.009G385600 Gossypium raimondii HOM05D000101 ORTHO05D000089 9.8e-08 62.8 200 29.5
Ciclev10024858m.g Citrus clementina HOM05D000101 ORTHO05D000089 1.3e-07 62.4 212 30.7
Gohir.D05G350300 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.3e-07 62.4 188 30.3
CSS0022234 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 2.9e-07 61.2 180 27.8
Duzib268G0075 Durio zibethinus HOM05D000101 ORTHO05D000089 2.9e-07 61.2 179 29.6
Duzib268G0383 Durio zibethinus HOM05D000101 ORTHO05D000089 2.9e-07 61.2 184 33.2
Gohir.D05G354500 Gossypium hirsutum HOM05D000101 ORTHO05D000089 2.9e-07 61.2 169 29.0
Potri.011G124000 Populus trichocarpa HOM05D000101 ORTHO05D000089 2.9e-07 61.2 156 33.3
Eucgr.F03323 Eucalyptus grandis HOM05D000101 ORTHO05D000089 4.9e-07 60.5 194 32.0
Gohir.A01G046175 Gossypium hirsutum HOM05D000101 ORTHO05D000089 4.9e-07 60.5 163 28.8
Gohir.D05G350100 Gossypium hirsutum HOM05D000101 ORTHO05D000089 4.9e-07 60.5 167 29.3
Gorai.009G381800 Gossypium raimondii HOM05D000101 ORTHO05D000089 4.9e-07 60.5 209 27.8
Gohir.D05G354700 Gossypium hirsutum HOM05D000101 ORTHO05D000089 6.4e-07 60.1 204 28.9
Gorai.009G386500 Gossypium raimondii HOM05D000101 ORTHO05D000089 6.4e-07 60.1 219 27.9
Thecc.07G090700 Theobroma cacao HOM05D000101 ORTHO05D000089 6.4e-07 60.1 203 30.0
Ciclev10027590m.g Citrus clementina HOM05D000101 ORTHO05D000089 8.3e-07 59.7 196 30.1
Thecc.07G091100 Theobroma cacao HOM05D000101 ORTHO05D000089 1.1e-06 59.3 205 28.3
Gohir.D01G036950 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.4e-06 58.9 204 28.9
Gohir.D05G353000 Gossypium hirsutum HOM05D000101 ORTHO05D000089 1.4e-06 58.9 199 28.6
Thecc.07G091000 Theobroma cacao HOM05D000101 ORTHO05D000089 1.4e-06 58.9 190 31.6
Duzib238G0002 Durio zibethinus HOM05D000101 ORTHO05D000089 1.9e-06 58.5 190 30.5
CAN.G1963.6 Capsicum annuum HOM05D000101 ORTHO05D000089 2.4e-06 58.2 125 34.4
Eucgr.L02387 Eucalyptus grandis HOM05D000101 ORTHO05D000089 2.4e-06 58.2 192 32.8
Gorai.009G383000 Gossypium raimondii HOM05D000101 ORTHO05D000089 2.4e-06 58.2 188 28.7
Ciclev10027635m.g Citrus clementina HOM05D000101 ORTHO05D000089 3.2e-06 57.8 173 33.5
Gohir.D05G360300 Gossypium hirsutum HOM05D000101 ORTHO05D000089 3.2e-06 57.8 166 32.5
CAN.G845.3 Capsicum annuum HOM05D000101 ORTHO05D000089 4.1e-06 57.4 150 30.7
Gohir.D05G349900 Gossypium hirsutum HOM05D000101 ORTHO05D000089 4.1e-06 57.4 155 30.3
Duzib268G1585 Durio zibethinus HOM05D000101 ORTHO05D000089 5.4e-06 57.0 194 30.4
Gohir.A04G036100 Gossypium hirsutum HOM05D000101 ORTHO05D000089 5.4e-06 57.0 201 29.9
MD01G1189200 Malus domestica HOM05D000005 ORTHO05D000012 5.4e-06 57.0 196 29.6
Gohir.D05G347200 Gossypium hirsutum HOM05D000101 ORTHO05D000089 7.0e-06 56.6 201 29.9
Nitab4.5_0000185g0090 Nicotiana tabacum HOM05D000101 ORTHO05D000089 7.0e-06 56.6 143 33.6
Actinidia29427 Actinidia chinensis HOM05D000101 ORTHO05D002559 9.2e-06 56.2 151 33.1


User provided reference genes

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