Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G168400 Prunus persica HOM05D000603 ORTHO05D025769 3.6e-76 288.9 240 100.0
Prupe.4G168200 Prunus persica HOM05D000603 ORTHO05D002962 3.0e-30 136.3 113 81.4
MD03G1240700 Malus domestica HOM05D000603 ORTHO05D002962 5.1e-22 109.0 200 71.5
Cfa019587 Carpinus fangiana HOM05D000603 ORTHO05D002962 1.3e-20 104.4 82 86.6
TAR629G2858 Trochodendron aralioides HOM05D000603 ORTHO05D002962 4.8e-20 102.4 81 84.0
Haze_09345 Corylus avellana HOM05D000603 ORTHO05D002962 6.3e-20 102.1 82 86.6
Nn1g09085 Nelumbo nucifera HOM05D000603 ORTHO05D002962 8.2e-20 101.7 81 84.0
FAN25G0270 Fragaria x ananassa HOM05D000603 ORTHO05D002962 1.5e-18 97.4 125 69.6
Nn1g04386 Nelumbo nucifera HOM05D000603 ORTHO05D002962 1.5e-18 97.4 81 81.5
FvH4_3g18600 Fragaria vesca HOM05D000603 ORTHO05D002962 2.0e-18 97.1 125 72.0
CANSAT01G2172 Cannabis sativa HOM05D000603 ORTHO05D002962 2.6e-18 96.7 87 80.5
FAN16G0599 Fragaria x ananassa HOM05D000603 ORTHO05D002962 5.9e-18 95.5 125 68.8
Manes.03G102700 Manihot esculenta HOM05D000603 ORTHO05D002962 5.9e-18 95.5 81 81.5
FAN21G1827 Fragaria x ananassa HOM05D000603 ORTHO05D002962 1.3e-17 94.4 125 66.4
TAR627G1122 Trochodendron aralioides HOM05D000603 ORTHO05D002962 1.3e-17 94.4 81 77.8
Dinv18349 Davidia involucrata HOM05D000603 ORTHO05D002962 1.7e-17 94.0 82 75.6
Ciclev10008185m.g Citrus clementina HOM05D000603 ORTHO05D002962 2.9e-17 93.2 85 74.1
TWI38G0354 Tripterygium wilfordii HOM05D000603 ORTHO05D002962 6.5e-17 92.0 84 79.8
Manes.15G092300 Manihot esculenta HOM05D000603 ORTHO05D002962 8.5e-17 91.7 81 77.8
FAN11G3602 Fragaria x ananassa HOM05D000603 ORTHO05D002962 1.1e-16 91.3 125 71.2
Glyma.12G228400 Glycine max HOM05D000603 ORTHO05D002962 1.4e-16 90.9 82 78.0
CDE03G0356 Ceratophyllum demersum HOM05D000603 ORTHO05D002962 1.9e-16 90.5 69 88.4
CDE04G3699 Ceratophyllum demersum HOM05D000603 ORTHO05D002962 1.9e-16 90.5 69 88.4
MBI03_g30505_MAGBIO Magnolia biondii HOM05D000603 ORTHO05D002962 1.9e-16 90.5 84 76.2
Psat5g239760 Pisum sativum HOM05D000603 ORTHO05D002962 7.2e-16 88.6 82 78.0
TWI38G1936 Tripterygium wilfordii HOM05D000603 ORTHO05D002962 7.2e-16 88.6 84 77.4
Sc03g0010440 Simmondsia chinensis HOM05D000603 ORTHO05D002962 9.4e-16 88.2 84 72.6
HPP92_023038 Vanilla planifolia HOM05D000603 ORTHO05D002962 9.4e-16 88.2 84 73.8
Eucgr.F01219 Eucalyptus grandis HOM05D000603 ORTHO05D002962 1.6e-15 87.4 83 77.1
Potri.011G112200 Populus trichocarpa HOM05D000603 ORTHO05D002962 1.6e-15 87.4 81 79.0
QL11p056780 Quercus lobata HOM05D000603 ORTHO05D002962 1.6e-15 87.4 81 79.0
Sabra11G0099400 Salix brachista HOM05D000603 ORTHO05D002962 1.6e-15 87.4 81 79.0
MBI13_g36732_MAGBIO Magnolia biondii HOM05D000603 ORTHO05D002962 2.1e-15 87.0 68 86.8
arahy.Tifrunner.gnm1.ann1.5AER9B Arachis hypogaea HOM05D000603 ORTHO05D002962 6.1e-15 85.5 78 78.2
Duzib187G1333 Durio zibethinus HOM05D000603 ORTHO05D002962 6.1e-15 85.5 81 76.5
Glyma.13G271400 Glycine max HOM05D000603 ORTHO05D002962 6.1e-15 85.5 82 73.2
CANSAT35G0382 Cannabis sativa HOM05D000603 ORTHO05D002962 7.9e-15 85.1 77 84.4
GSVIVG01014223001 Vitis vinifera HOM05D000603 ORTHO05D002962 1.0e-14 84.7 79 79.7
CSS0008226 Camellia sinensis var. sinensis HOM05D000603 ORTHO05D002962 1.4e-14 84.3 82 76.8
CSS0021694 Camellia sinensis var. sinensis HOM05D000603 ORTHO05D002962 1.4e-14 84.3 82 76.8
Potri.001G393400 Populus trichocarpa HOM05D000603 ORTHO05D002962 1.8e-14 84.0 81 75.3
Duzib213G0066 Durio zibethinus HOM05D000603 ORTHO05D002962 2.3e-14 83.6 81 75.3
COL.COLO4_17595 Corchorus olitorius HOM05D000603 ORTHO05D002962 3.0e-14 83.2 84 76.2
Lj3g0008870 Lotus japonicus HOM05D000603 ORTHO05D002962 3.0e-14 83.2 76 77.6
VMungo1080G0181 Vigna mungo HOM05D000603 ORTHO05D002962 3.0e-14 83.2 69 81.2
arahy.Tifrunner.gnm1.ann1.97KWX8 Arachis hypogaea HOM05D000603 ORTHO05D002962 3.9e-14 82.8 82 74.4
Lalb_Chr01g0006761 Lupinus albus HOM05D000603 ORTHO05D002962 3.9e-14 82.8 70 78.6
MBI13_g38282_MAGBIO Magnolia biondii HOM05D000603 ORTHO05D025769 3.9e-14 82.8 66 86.4
Actinidia12559 Actinidia chinensis HOM05D000603 ORTHO05D002962 5.1e-14 82.4 92 72.8
arahy.Tifrunner.gnm1.ann1.MA816V Arachis hypogaea HOM05D000603 ORTHO05D002962 5.1e-14 82.4 82 74.4
CSS0029084 Camellia sinensis var. sinensis HOM05D000603 ORTHO05D002962 5.1e-14 82.4 78 76.9
Duzib213G0806 Durio zibethinus HOM05D000603 ORTHO05D002962 6.7e-14 82.0 81 76.5
ATR0602G277 Amborella trichopoda HOM05D000603 ORTHO05D002962 8.8e-14 81.6 82 74.4
CsaV3_4G008290 Cucumis sativus L. HOM05D000603 ORTHO05D002962 8.8e-14 81.6 83 74.7
MD11G1260100 Malus domestica HOM05D000603 ORTHO05D002962 8.8e-14 81.6 83 75.9
arahy.Tifrunner.gnm1.ann1.PN9IID Arachis hypogaea HOM05D000603 ORTHO05D002962 1.1e-13 81.3 69 81.2
Lalb_Chr01g0016661 Lupinus albus HOM05D000603 ORTHO05D002962 1.5e-13 80.9 69 78.3
Lalb_Chr25g0285981 Lupinus albus HOM05D000603 ORTHO05D002962 1.5e-13 80.9 69 78.3
Phvul.005G067700 Phaseolus vulgaris HOM05D000603 ORTHO05D002962 1.5e-13 80.9 86 73.3
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 1.5e-13 80.9 69 81.2
Aqoxy1G03175 Aquilegia oxysepala HOM05D000603 ORTHO05D002962 2.6e-13 80.1 82 75.6
MELO3C032551.2 Cucumis melo HOM05D000603 ORTHO05D002962 2.6e-13 80.1 88 68.2
Os09g0509000 Oryza sativa ssp. japonica HOM05D000603 ORTHO05D002962 4.4e-13 79.3 87 72.4
RcHm_v2.0_Chr5g0031431 Rosa chinensis HOM05D000603 ORTHO05D002962 4.4e-13 79.3 82 75.6
ClCG00G004730 Citrullus lanatus HOM05D000603 ORTHO05D002962 9.7e-13 78.2 84 69.0
ClCG07G010040 Citrullus lanatus HOM05D000603 ORTHO05D002962 9.7e-13 78.2 84 69.0
Medtr2g078090 Medicago truncatula HOM05D000603 ORTHO05D002962 9.7e-13 78.2 77 74.0
QL11p056678 Quercus lobata HOM05D000603 ORTHO05D025769 9.7e-13 78.2 79 73.4
Thecc.07G106500 Theobroma cacao HOM05D000603 ORTHO05D002962 9.7e-13 78.2 85 70.6
vmacro11916 Vaccinium macrocarpon HOM05D000603 ORTHO05D002962 9.7e-13 78.2 86 68.6
Zm00001eb401990 Zea mays HOM05D000603 ORTHO05D002962 9.7e-13 78.2 77 76.6
ATR0681G239 Amborella trichopoda HOM05D000603 ORTHO05D002962 1.3e-12 77.8 72 52.8
Gohir.A04G039900 Gossypium hirsutum HOM05D000603 ORTHO05D002962 1.3e-12 77.8 81 71.6
PSO541G0477 Papaver somniferum HOM05D000603 ORTHO05D002962 1.3e-12 77.8 84 66.7
PSO675G3525 Papaver somniferum HOM05D000603 ORTHO05D002962 1.3e-12 77.8 84 66.7
Sabra16G0258100 Salix brachista HOM05D000603 ORTHO05D002962 1.7e-12 77.4 75 74.7
Gohir.D05G342700 Gossypium hirsutum HOM05D000603 ORTHO05D002962 2.2e-12 77.0 78 73.1
Gorai.009G369000 Gossypium raimondii HOM05D000603 ORTHO05D002962 2.2e-12 77.0 78 73.1
Lj1g0018379 Lotus japonicus HOM05D000603 ORTHO05D025769 2.8e-12 76.6 72 55.6
Os09g0132600 Oryza sativa ssp. japonica HOM05D000603 ORTHO05D002962 2.8e-12 76.6 82 73.2
PSO541G4172 Papaver somniferum HOM05D000603 ORTHO05D002962 2.8e-12 76.6 86 65.1
Sed0015464 Sechium edule HOM05D000603 ORTHO05D002962 2.8e-12 76.6 88 69.3
vmacro17431 Vaccinium macrocarpon HOM05D000603 ORTHO05D002962 2.8e-12 76.6 86 67.4
Gohir.D01G043500 Gossypium hirsutum HOM05D000603 ORTHO05D002962 3.7e-12 76.3 81 72.8
Gorai.002G062600 Gossypium raimondii HOM05D000603 ORTHO05D002962 3.7e-12 76.3 81 72.8
Sc16g0007480 Simmondsia chinensis HOM05D000603 ORTHO05D002962 3.7e-12 76.3 80 61.2
Cpa.g.sc131.58 Carica papaya HOM05D000603 ORTHO05D002962 1.8e-11 73.9 80 70.0
Nn2g13159 Nelumbo nucifera HOM05D000603 ORTHO05D002962 1.8e-11 73.9 83 68.7
Lj1C832T7 Lonicera japonica HOM05D000603 ORTHO05D002962 2.4e-11 73.6 65 78.5
HanXRQChr10g0304851 Helianthus annuus HOM05D000603 ORTHO05D002962 3.1e-11 73.2 84 69.0
THA.LOC104810444 Tarenaya hassleriana HOM05D000603 ORTHO05D002962 3.1e-11 73.2 74 74.3
DCAR_003707 Daucus carota HOM05D000603 ORTHO05D002962 4.1e-11 72.8 66 77.3
Lsat_1_v5_gn_5_127341 Lactuca sativa HOM05D000603 ORTHO05D002962 4.1e-11 72.8 56 91.1
Psat7g222960 Pisum sativum HOM05D000603 ORTHO05D025769 4.1e-11 72.8 78 73.1
Lsat_1_v5_gn_7_103261 Lactuca sativa HOM05D000603 ORTHO05D002962 5.3e-11 72.4 67 79.1
DCAR_019591 Daucus carota HOM05D000603 ORTHO05D002962 6.9e-11 72.0 32 90.6
Migut.H01981 Erythranthe guttata HOM05D000603 ORTHO05D002962 6.9e-11 72.0 32 90.6
Solyc12g014230.2 Solanum lycopersicum HOM05D000603 ORTHO05D002962 6.9e-11 72.0 86 68.6
Sopen12g006020 Solanum pennellii HOM05D000603 ORTHO05D002962 6.9e-11 72.0 86 68.6
Oeu051117.2 Olea europaea HOM05D000603 ORTHO05D002962 9.1e-11 71.6 35 80.0
HanXRQChr11g0331331 Helianthus annuus HOM05D000603 ORTHO05D002962 1.2e-10 71.2 84 69.0
Lju359C0T2 Lonicera japonica HOM05D000603 ORTHO05D002962 1.2e-10 71.2 66 71.2
MSTRG.14223 Avicennia marina HOM05D000603 ORTHO05D002962 1.5e-10 70.9 32 87.5
CAN.G292.4 Capsicum annuum HOM05D000603 ORTHO05D002962 1.5e-10 70.9 32 87.5
ECA236G2711 Erigeron canadensis HOM05D000603 ORTHO05D002962 1.5e-10 70.9 70 78.6
Medtr1g009840 Medicago truncatula HOM05D000603 ORTHO05D002962 1.5e-10 70.9 32 87.5
Nitab4.5_0000383g0290 Nicotiana tabacum HOM05D000603 ORTHO05D002962 1.5e-10 70.9 32 87.5
Oeu061347.1 Olea europaea HOM05D000603 ORTHO05D002962 1.5e-10 70.9 32 87.5
Peaxi162Scf00027g00058 Petunia axillaris HOM05D000603 ORTHO05D002962 1.5e-10 70.9 32 87.5
PGR083G0905 Punica granatum HOM05D000603 ORTHO05D002962 1.5e-10 70.9 32 87.5
Sopen10g003300 Solanum pennellii HOM05D000603 ORTHO05D002962 1.5e-10 70.9 81 72.8
PGSC0003DMG400021272 Solanum tuberosum HOM05D000603 ORTHO05D002962 1.5e-10 70.9 81 72.8
SGA_v2.0_scaffold130G34310 Striga asiatica HOM05D000603 ORTHO05D002962 2.0e-10 70.5 32 90.6
Ca_04005_v3 Cicer arietinum L. HOM05D000603 ORTHO05D002962 2.6e-10 70.1 69 72.5
Solyc10g007180.2 Solanum lycopersicum HOM05D000603 ORTHO05D002962 2.6e-10 70.1 79 73.4
Nitab4.5_0001208g0010 Nicotiana tabacum HOM05D000603 ORTHO05D002962 3.4e-10 69.7 32 84.4
CAN.G1119.12 Capsicum annuum HOM05D000603 ORTHO05D002962 4.5e-10 69.3 82 68.3
Peaxi162Scf00934g00134 Petunia axillaris HOM05D000603 ORTHO05D002962 4.5e-10 69.3 82 69.5
Aa31LG10G10900 Aethionema arabicum HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 87.5
Aa31LG8G2220 Aethionema arabicum HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 87.5
AL3G27330 Arabidopsis lyrata HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 87.5
AT3G15000 Arabidopsis thaliana HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 87.5
BcaB06g25343 Brassica carinata HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 87.5
BcaB06g29529 Brassica carinata HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 87.5
BcaC01g03908 Brassica carinata HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 87.5
A03p39090 Brassica napus HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 87.5
A05p34420 Brassica napus HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 87.5
C03p47370 Brassica napus HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 87.5
C05p52180 Brassica napus HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 87.5
BolC3t17007H Brassica oleracea HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 87.5
BolC5t33902H Brassica oleracea HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 87.5
BraA03t13058Z Brassica rapa HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 87.5
BraA05t22261Z Brassica rapa HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 87.5
Carub.0003s1466 Capsella rubella HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 87.5
CARHR089960 Cardamine hirsuta HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 87.5
Thhalv10020847m.g Eutrema salsugineum HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 87.5
Lj2g0024427 Lotus japonicus HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 84.4
Rhsim06G0205800 Rhododendron simsii HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 84.4
Sp3g13200 Schrenkiella parvula HOM05D000603 ORTHO05D002962 5.9e-10 68.9 32 87.5
CiPaw.11G162300 Carya illinoinensis HOM05D000603 ORTHO05D002962 7.7e-10 68.6 81 67.9
THA.LOC104815569 Tarenaya hassleriana HOM05D000603 ORTHO05D002962 7.7e-10 68.6 66 77.3
Atru.chr2.2211 Acer truncatum HOM05D000603 ORTHO05D002962 1.0e-09 68.2 32 87.5
BcaB04g20953 Brassica carinata HOM05D000603 ORTHO05D002962 1.3e-09 67.8 32 87.5
Nitab4.5_0000035g0110 Nicotiana tabacum HOM05D000603 ORTHO05D002962 1.3e-09 67.8 96 61.5
PGSC0003DMG400015383 Solanum tuberosum HOM05D000603 ORTHO05D002962 1.3e-09 67.8 86 51.2
MELO3C016106.2 Cucumis melo HOM05D000603 ORTHO05D002962 1.7e-09 67.4 83 54.2
Gohir.A01G057100 Gossypium hirsutum HOM05D000603 ORTHO05D002962 1.7e-09 67.4 81 67.9
SEGI_14471 Sequoiadendron giganteum HOM05D000603 ORTHO05D002962 2.2e-09 67.0 31 83.9
SEGI_28337 Sequoiadendron giganteum HOM05D000603 ORTHO05D002962 2.2e-09 67.0 31 83.9
unitig_26.g9519 Utricularia gibba HOM05D000603 ORTHO05D002962 2.9e-09 66.6 84 64.3
MELO3C005489.2 Cucumis melo HOM05D000603 ORTHO05D002962 3.8e-09 66.2 32 84.4
HanXRQChr15g0494681 Helianthus annuus HOM05D000603 ORTHO05D002962 3.8e-09 66.2 32 81.2
PSO675G2810 Papaver somniferum HOM05D000603 ORTHO05D002962 5.0e-09 65.9 84 59.5
SHI21681 Sapria himalayana HOM05D000603 ORTHO05D002962 5.0e-09 65.9 81 64.2
AUR62019531 Chenopodium quinoa HOM05D000603 ORTHO05D002962 6.5e-09 65.5 32 78.1
AUR62036106 Chenopodium quinoa HOM05D000603 ORTHO05D002962 6.5e-09 65.5 32 78.1
Dinv14974 Davidia involucrata HOM05D000603 ORTHO05D002962 6.5e-09 65.5 82 53.7
Lj3P163T14 Lonicera japonica HOM05D000603 ORTHO05D002962 6.5e-09 65.5 32 78.1
SGA_v2.0_scaffold130G34312 Striga asiatica HOM05D000603 ORTHO05D002962 6.5e-09 65.5 32 81.2
SGA_v2.0_scaffold70G23710 Striga asiatica HOM05D000603 ORTHO05D002962 1.4e-08 64.3 91 59.3
TAR636G1767 Trochodendron aralioides HOM05D000603 ORTHO05D002962 1.9e-08 63.9 76 44.7
TAR636G2784 Trochodendron aralioides HOM05D000603 ORTHO05D002962 1.9e-08 63.9 76 44.7
EL10Ac4g08304 Beta vulgaris HOM05D000603 ORTHO05D002962 2.5e-08 63.5 32 78.1
Hund23558 Selenicereus undatus HOM05D000603 ORTHO05D002962 2.5e-08 63.5 84 58.3
TAR629G0293 Trochodendron aralioides HOM05D000603 ORTHO05D002962 2.5e-08 63.5 83 65.1
A01p38910 Brassica napus HOM05D000603 ORTHO05D002962 3.2e-08 63.2 32 81.2
BraA01t03937Z Brassica rapa HOM05D000603 ORTHO05D002962 3.2e-08 63.2 32 81.2
Lj9A124T27 Lonicera japonica HOM05D000603 ORTHO05D002962 3.2e-08 63.2 31 80.6
unitig_749.g13535 Utricularia gibba HOM05D000603 ORTHO05D002962 4.2e-08 62.8 82 64.6
AT1G53260 Arabidopsis thaliana HOM05D000603 ORTHO05D002962 5.5e-08 62.4 32 78.1
ECA234G2000 Erigeron canadensis HOM05D000603 ORTHO05D002962 7.2e-08 62.0 90 61.1
Nitab4.5_0005440g0030 Nicotiana tabacum HOM05D000603 ORTHO05D002962 7.2e-08 62.0 44 63.6
Ah.04g156620 Amaranthus hybridus HOM05D000603 ORTHO05D002962 9.4e-08 61.6 83 59.0
Thhalv10012347m.g Eutrema salsugineum HOM05D000603 ORTHO05D002962 1.6e-07 60.8 30 80.0
PSO017G3112 Papaver somniferum HOM05D000603 ORTHO05D002962 1.6e-07 60.8 30 80.0
AL1G61680 Arabidopsis lyrata HOM05D000603 ORTHO05D002962 2.1e-07 60.5 73 45.2
Lj9A128T47 Lonicera japonica HOM05D000603 ORTHO05D002962 2.1e-07 60.5 31 77.4
Rhsim06G0205900 Rhododendron simsii HOM05D000603 ORTHO05D002962 2.1e-07 60.5 32 71.9
CsaV3_4G008300 Cucumis sativus L. HOM05D000603 ORTHO05D172643 2.7e-07 60.1 31 77.4
BcaC09g48460 Brassica carinata HOM05D000603 ORTHO05D002962 4.7e-07 59.3 82 42.7
THA.LOC104815568 Tarenaya hassleriana HOM05D000603 ORTHO05D002962 2.3e-06 57.0 30 73.3
Sed0026437 Sechium edule HOM05D000603 ORTHO05D002962 3.9e-06 56.2 32 68.8
PSO170G4774 Papaver somniferum HOM05D000603 ORTHO05D002962 5.2e-06 55.8 27 77.8
Aqoxy2G00921 Aquilegia oxysepala HOM05D000603 ORTHO05D002962 8.8e-06 55.1 92 55.4


User provided reference genes

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