Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 5.6e-66 255.0 233 100.0
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 1.3e-57 227.3 127 92.9
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 8.1e-57 224.6 237 77.2
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.8e-56 223.4 233 79.8
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.4e-56 223.0 234 82.5
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 5.3e-56 221.9 237 83.1
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 2.0e-55 219.9 127 88.2
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 2.6e-55 219.5 127 87.4
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 7.6e-55 218.0 127 87.4
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 1.7e-54 216.9 127 89.0
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 1.7e-54 216.9 126 86.5
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 2.2e-54 216.5 127 88.2
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 2.2e-54 216.5 127 88.2
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 2.9e-54 216.1 127 88.2
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 1.1e-53 214.2 128 85.2
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 1.9e-53 213.4 127 85.8
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 3.2e-53 212.6 127 83.5
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 5.5e-53 211.8 128 84.4
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 5.5e-53 211.8 126 86.5
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 7.1e-53 211.5 127 83.5
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 7.1e-53 211.5 127 83.5
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 1.2e-52 210.7 125 84.0
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.2e-52 210.7 127 85.0
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.6e-52 210.3 127 84.3
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 2.1e-52 209.9 128 82.8
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 2.1e-52 209.9 127 82.7
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 2.7e-52 209.5 127 86.6
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 3.5e-52 209.1 128 82.0
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 3.5e-52 209.1 127 84.3
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 3.5e-52 209.1 131 81.7
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 4.6e-52 208.8 128 84.4
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 6.0e-52 208.4 127 84.3
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 1.0e-51 207.6 126 85.7
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.0e-51 207.6 127 81.1
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 1.0e-51 207.6 126 85.7
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 1.3e-51 207.2 128 82.8
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.8e-51 206.8 128 82.0
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 1.8e-51 206.8 127 84.3
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 1.8e-51 206.8 125 84.0
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 2.3e-51 206.5 127 81.9
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 3.0e-51 206.1 127 83.5
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 3.0e-51 206.1 127 85.0
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 3.9e-51 205.7 127 81.1
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 5.1e-51 205.3 128 85.9
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 1.1e-50 204.1 127 81.1
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 1.9e-50 203.4 127 78.7
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 1.9e-50 203.4 127 83.5
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 1.9e-50 203.4 127 83.5
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.9e-50 203.4 128 82.0
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 1.9e-50 203.4 127 78.7
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.3e-50 202.6 127 79.5
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 3.3e-50 202.6 127 79.5
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 3.3e-50 202.6 128 81.2
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 3.3e-50 202.6 127 81.1
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 3.3e-50 202.6 127 78.7
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 3.3e-50 202.6 127 78.7
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 4.3e-50 202.2 127 81.9
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 4.3e-50 202.2 127 81.9
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 4.3e-50 202.2 126 79.4
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 5.6e-50 201.8 122 86.1
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 7.4e-50 201.4 128 81.2
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 1.3e-49 200.7 127 81.9
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.3e-49 200.7 128 80.5
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 1.6e-49 200.3 127 79.5
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 1.6e-49 200.3 126 83.3
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 3.7e-49 199.1 128 79.7
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 3.7e-49 199.1 126 82.5
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 4.8e-49 198.7 128 79.7
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 4.8e-49 198.7 127 79.5
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 6.2e-49 198.4 127 81.9
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 6.2e-49 198.4 126 80.2
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 8.2e-49 198.0 128 78.9
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 1.4e-48 197.2 125 80.8
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 1.4e-48 197.2 126 80.2
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 2.4e-48 196.4 127 77.2
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 3.1e-48 196.1 127 75.6
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 4.0e-48 195.7 129 76.7
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 9.0e-48 194.5 127 79.5
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 9.0e-48 194.5 127 79.5
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.2e-47 194.1 127 78.0
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.5e-47 193.7 124 81.5
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.5e-47 193.7 126 79.4
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 2.6e-47 193.0 127 76.4
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 3.4e-47 192.6 127 77.2
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 3.4e-47 192.6 127 81.1
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 3.4e-47 192.6 126 79.4
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 1.0e-46 191.0 120 80.8
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 1.0e-46 191.0 127 75.6
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 2.2e-46 189.9 126 75.4
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 6.5e-46 188.3 162 65.4
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 8.4e-46 188.0 143 69.2
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 1.9e-45 186.8 118 77.1
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 2.5e-45 186.4 127 74.8
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 2.5e-45 186.4 111 85.6
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 4.2e-45 185.7 127 74.0
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 5.5e-45 185.3 115 81.7
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 9.3e-45 184.5 127 74.0
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 9.3e-45 184.5 127 74.0
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 9.3e-45 184.5 203 53.7
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.6e-44 183.7 127 73.2
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 2.1e-44 183.3 126 73.8
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 3.5e-44 182.6 126 73.8
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 4.6e-44 182.2 126 73.8
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 1.0e-43 181.0 127 73.2
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 1.3e-43 180.6 127 71.7
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 2.3e-43 179.9 125 72.0
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 2.3e-43 179.9 125 72.0
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 2.3e-43 179.9 134 71.6
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 3.0e-43 179.5 125 71.2
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 3.0e-43 179.5 106 87.7
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 6.7e-43 178.3 125 71.2
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 6.7e-43 178.3 109 84.4
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 1.5e-42 177.2 108 80.6
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 5.9e-39 165.2 125 70.4
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 1.0e-38 164.5 111 78.4
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 1.0e-38 164.5 125 66.4
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.8e-38 162.5 206 80.1
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 6.5e-38 161.8 126 69.0
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 8.5e-38 161.4 128 69.5
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 5.5e-37 158.7 109 78.9
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 7.2e-37 158.3 125 63.2
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 7.2e-37 158.3 129 65.9
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 4.6e-36 155.6 95 81.1
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 7.9e-36 154.8 101 79.2
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 1.1e-34 151.0 126 61.1
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.5e-34 150.6 125 63.2
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 8.2e-33 144.8 128 61.7
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.4e-32 144.1 84 88.1
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 6.9e-32 141.7 95 73.7
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 2.0e-31 140.2 113 66.4
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 5.9e-31 138.7 84 83.3
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 1.3e-30 137.5 130 59.2
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 3.8e-30 136.0 134 57.5
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 3.8e-30 136.0 134 57.5
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 5.0e-30 135.6 84 83.3
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 6.5e-30 135.2 131 56.5
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 1.9e-29 133.7 134 56.7
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 7.2e-29 131.7 128 57.0
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 9.4e-29 131.3 127 61.4
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 2.1e-28 130.2 84 81.0
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 6.7e-27 125.2 103 59.2
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 2.0e-26 123.6 85 74.1
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 4.4e-26 122.5 128 53.9
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 4.4e-26 122.5 82 80.5
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 5.3e-24 115.5 138 51.4
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.4e-19 100.9 79 67.1
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 1.2e-15 87.8 52 80.8
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.2e-15 87.8 51 82.4
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 2.6e-15 86.7 48 85.4
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 1.0e-14 84.7 74 63.5
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 1.3e-14 84.3 87 51.7
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 2.7e-12 76.6 58 65.5
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 2.3e-11 73.6 83 45.8
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 7.5e-10 68.6 41 75.6
SEGI_17825 Sequoiadendron giganteum HOM05D004341 ORTHO05D005075 1.3e-09 67.8 52 63.5
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 1.7e-09 67.4 104 35.6
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 4.8e-09 65.9 37 81.1
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 9.1e-08 61.6 110 39.1
arahy.Tifrunner.gnm1.ann1.W2JFNW Arachis hypogaea HOM05D004341 ORTHO05D005075 2.2e-06 57.0 34 76.5
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 2.9e-06 56.6 46 63.0


User provided reference genes

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