Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G120800 Prunus persica HOM05D002102 ORTHO05D008242 1.9e-124 449.5 278 100.0
MD10G1224400 Malus domestica HOM05D002102 ORTHO05D008242 6.9e-95 351.3 286 77.6
RcHm_v2.0_Chr5g0021821 Rosa chinensis HOM05D002102 ORTHO05D008242 9.0e-87 324.3 288 75.0
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 6.7e-82 308.1 274 77.0
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 6.9e-79 298.1 246 78.0
FvH4_3g13341 Fragaria vesca HOM05D002102 ORTHO05D008242 1.2e-78 297.4 181 85.6
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 3.3e-73 279.3 170 84.7
GSVIVG01037088001 Vitis vinifera HOM05D002102 ORTHO05D008242 2.0e-70 270.0 181 77.9
QL11p010809 Quercus lobata HOM05D002102 ORTHO05D008242 1.4e-68 263.8 180 76.1
Oeu023527.1 Olea europaea HOM05D002102 ORTHO05D008242 1.9e-68 263.5 181 75.7
PGR004G2223 Punica granatum HOM05D002102 ORTHO05D008242 1.2e-67 260.8 180 74.4
TAR627G1208 Trochodendron aralioides HOM05D002102 ORTHO05D008242 1.6e-67 260.4 181 75.7
Eucgr.E03887 Eucalyptus grandis HOM05D002102 ORTHO05D008242 6.1e-67 258.5 180 76.7
CiPaw.09G140600 Carya illinoinensis HOM05D002102 ORTHO05D008242 1.0e-66 257.7 181 74.6
TWI63G1577 Tripterygium wilfordii HOM05D002102 ORTHO05D008242 3.9e-66 255.8 179 74.9
Rhsim02G0171500 Rhododendron simsii HOM05D002102 ORTHO05D008242 6.7e-66 255.0 181 72.4
Cpa.g.sc30.78 Carica papaya HOM05D002102 ORTHO05D008242 8.8e-66 254.6 182 75.3
Potri.001G074200 Populus trichocarpa HOM05D002102 ORTHO05D008242 8.8e-66 254.6 181 73.5
arahy.Tifrunner.gnm1.ann1.N8G6CJ Arachis hypogaea HOM05D002102 ORTHO05D008242 1.1e-65 254.2 181 72.9
CSS0016773 Camellia sinensis var. sinensis HOM05D002102 ORTHO05D008242 1.1e-65 254.2 181 73.5
Nn7g38425 Nelumbo nucifera HOM05D002102 ORTHO05D008242 3.3e-65 252.7 179 73.7
TPR.G19825 Trifolium pratense HOM05D002102 ORTHO05D008242 4.3e-65 252.3 182 73.6
Ciclev10016300m.g Citrus clementina HOM05D002102 ORTHO05D008242 7.4e-65 251.5 179 74.9
Actinidia34700 Actinidia chinensis HOM05D002102 ORTHO05D008242 1.3e-64 250.8 181 71.3
CANSAT35G0655 Cannabis sativa HOM05D002102 ORTHO05D008242 1.3e-64 250.8 180 73.9
Gorai.005G268700 Gossypium raimondii HOM05D002102 ORTHO05D008242 1.3e-64 250.8 170 76.5
Aqoxy1G01357 Aquilegia oxysepala HOM05D002102 ORTHO05D008242 1.7e-64 250.4 181 72.4
HanXRQChr09g0257721 Helianthus annuus HOM05D002102 ORTHO05D008242 1.7e-64 250.4 178 75.8
arahy.Tifrunner.gnm1.ann1.1TYS6L Arachis hypogaea HOM05D002102 ORTHO05D008242 2.2e-64 250.0 181 71.3
Gohir.A03G218300 Gossypium hirsutum HOM05D002102 ORTHO05D008242 2.2e-64 250.0 170 76.5
Lsat_1_v5_gn_8_106940 Lactuca sativa HOM05D002102 ORTHO05D008242 2.2e-64 250.0 181 74.0
Gohir.D02G240400 Gossypium hirsutum HOM05D002102 ORTHO05D008242 2.8e-64 249.6 170 75.9
CsaV3_6G053190 Cucumis sativus L. HOM05D002102 ORTHO05D008242 3.7e-64 249.2 242 58.7
Sabra01G0052500 Salix brachista HOM05D002102 ORTHO05D008242 3.7e-64 249.2 179 71.5
Ca_22534_v3 Cicer arietinum L. HOM05D002102 ORTHO05D008242 4.8e-64 248.8 181 74.0
Manes.03G073000 Manihot esculenta HOM05D002102 ORTHO05D008242 1.4e-63 247.3 179 70.9
vmacro11020 Vaccinium macrocarpon HOM05D002102 ORTHO05D008242 1.4e-63 247.3 204 65.2
Glyma.08G267700 Glycine max HOM05D002102 ORTHO05D008242 2.4e-63 246.5 181 71.3
Thecc.02G001200 Theobroma cacao HOM05D002102 ORTHO05D008242 2.4e-63 246.5 170 75.3
Medtr8g070680 Medicago truncatula HOM05D002102 ORTHO05D008242 4.1e-63 245.7 181 71.8
Sed0010823 Sechium edule HOM05D002102 ORTHO05D008242 4.1e-63 245.7 180 72.2
MELO3C006996.2 Cucumis melo HOM05D002102 ORTHO05D008242 6.9e-63 245.0 181 70.7
Cc09_g04620 Coffea canephora HOM05D002102 ORTHO05D008242 1.5e-62 243.8 181 70.7
Nitab4.5_0002246g0020 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.5e-62 243.8 181 69.1
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.0e-62 243.4 272 66.5
Lj4g0016411 Lotus japonicus HOM05D002102 ORTHO05D008242 2.6e-62 243.0 181 69.6
Lalb_Chr21g0315091 Lupinus albus HOM05D002102 ORTHO05D008242 3.4e-62 242.7 181 69.6
PGSC0003DMG402011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 3.4e-62 242.7 181 69.1
Glyma.16G094300 Glycine max HOM05D002102 ORTHO05D008242 1.3e-61 240.7 181 69.1
EL10Ac4g09967 Beta vulgaris HOM05D002102 ORTHO05D008242 1.7e-61 240.4 181 70.7
Peaxi162Scf00313g00048 Petunia axillaris HOM05D002102 ORTHO05D008242 5.0e-61 238.8 180 68.9
Solyc10g005180.3 Solanum lycopersicum HOM05D002102 ORTHO05D008242 6.5e-61 238.4 181 66.9
Haze_05188 Corylus avellana HOM05D002102 ORTHO05D008242 3.2e-60 236.1 332 52.1
PSO170G6365 Papaver somniferum HOM05D002102 ORTHO05D008242 5.5e-60 235.3 244 55.3
PSO675G4370 Papaver somniferum HOM05D002102 ORTHO05D008242 9.4e-60 234.6 244 54.9
Thhalv10000983m.g Eutrema salsugineum HOM05D002102 ORTHO05D008242 1.6e-59 233.8 181 68.5
Phvul.003G275400 Phaseolus vulgaris HOM05D002102 ORTHO05D008242 2.7e-59 233.0 182 68.7
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 3.6e-59 232.6 160 73.1
Os01g0798500 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D008242 3.6e-59 232.6 180 67.8
CARHR178230 Cardamine hirsuta HOM05D002102 ORTHO05D008242 1.4e-58 230.7 181 68.5
Carub.0008s0361 Capsella rubella HOM05D002102 ORTHO05D008242 2.3e-58 229.9 181 68.0
Sp2g09460 Schrenkiella parvula HOM05D002102 ORTHO05D008242 3.0e-58 229.6 182 66.5
AL8G14900 Arabidopsis lyrata HOM05D002102 ORTHO05D008242 6.7e-58 228.4 181 68.0
Psat0s2609g0120 Pisum sativum HOM05D002102 ORTHO05D008242 3.3e-57 226.1 173 68.2
BcaC06g31600 Brassica carinata HOM05D002102 ORTHO05D008242 4.4e-57 225.7 182 65.4
AT5G44650 Arabidopsis thaliana HOM05D002102 ORTHO05D008242 5.7e-57 225.3 181 65.7
Ah.06g191610 Amaranthus hybridus HOM05D002851 ORTHO05D003084 9.7e-57 224.6 174 69.0
ECA232G0416 Erigeron canadensis HOM05D002102 ORTHO05D008242 1.3e-56 224.2 167 69.5
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 1.7e-56 223.8 174 66.7
BcaB07g30508 Brassica carinata HOM05D002102 ORTHO05D008242 2.8e-56 223.0 182 65.4
Zm00001eb150810 Zea mays HOM05D002102 ORTHO05D008242 4.8e-56 222.2 180 65.0
BcaC06g34527 Brassica carinata HOM05D002102 ORTHO05D008242 6.3e-56 221.9 182 64.8
A06p47030 Brassica napus HOM05D002102 ORTHO05D008242 6.3e-56 221.9 182 64.8
C07p27540 Brassica napus HOM05D002102 ORTHO05D008242 6.3e-56 221.9 182 64.8
BolC7t43285H Brassica oleracea HOM05D002102 ORTHO05D008242 6.3e-56 221.9 182 64.8
PGSC0003DMG401011260 Solanum tuberosum HOM05D002102 ORTHO05D008242 1.2e-54 217.6 157 70.1
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 1.7e-53 213.8 167 67.1
BraA06t27576Z Brassica rapa HOM05D002102 ORTHO05D008242 2.2e-53 213.4 200 59.5
Atru.chr10.236 Acer truncatum HOM05D002102 ORTHO05D008242 3.2e-52 209.5 149 73.8
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 4.7e-51 205.7 148 70.3
Lj1A1152G38 Lonicera japonica HOM05D002102 ORTHO05D008242 8.8e-50 201.4 147 70.7
COL.COLO4_25027 Corchorus olitorius HOM05D002102 ORTHO05D008242 3.3e-49 199.5 151 70.2
Sc24g0002820 Simmondsia chinensis HOM05D002102 ORTHO05D008242 1.7e-48 197.2 149 68.5
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 4.8e-48 195.7 143 72.0
Sopen10g001170 Solanum pennellii HOM05D002102 ORTHO05D008242 2.4e-47 193.4 152 63.2
Migut.M02036 Erythranthe guttata HOM05D002102 ORTHO05D008242 1.2e-46 191.0 162 64.2
CDE11G0809 Ceratophyllum demersum HOM05D002102 ORTHO05D008242 7.7e-46 188.3 163 60.7
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 8.5e-45 184.9 103 90.3
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 1.1e-44 184.5 140 65.0
HPP92_001585 Vanilla planifolia HOM05D002102 ORTHO05D008242 5.5e-44 182.2 156 60.3
PSO541G0118 Papaver somniferum HOM05D002102 ORTHO05D008242 2.7e-43 179.9 244 46.7
Mapoly0033s0150 Marchantia polymorpha HOM05D002102 ORTHO05D008242 6.1e-43 178.7 176 55.7
MBI02_g17886_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D008242 1.7e-40 170.6 170 56.5
Pp3c15_7910 Physcomitrium patens HOM05D002102 ORTHO05D008242 3.1e-39 166.4 171 56.7
RcHm_v2.0_Chr5g0021891 Rosa chinensis HOM05D002102 ORTHO05D008242 1.2e-38 164.5 190 68.9
AUR62040994 Chenopodium quinoa HOM05D002102 ORTHO05D008242 3.8e-37 159.5 123 67.5
AUR62042810 Chenopodium quinoa HOM05D002102 ORTHO05D008242 1.9e-36 157.1 124 66.9
SGA_v2.0_scaffold423G51451 Striga asiatica HOM05D002102 ORTHO05D008242 4.2e-36 156.0 180 51.7
MD05G1242600 Malus domestica HOM05D002102 ORTHO05D008242 2.1e-35 153.7 169 80.5
Duzib132G0691 Durio zibethinus HOM05D002102 ORTHO05D008242 1.4e-34 151.0 140 59.3
ATR0073G005 Amborella trichopoda HOM05D002102 ORTHO05D008242 3.0e-34 149.8 162 53.7
RcHm_v2.0_Chr5g0021971 Rosa chinensis HOM05D002102 ORTHO05D008242 4.4e-33 146.0 183 67.2
AagrBONN_evm.TU.Sc2ySwM_368.1584 Anthoceros agrestis HOM05D002102 ORTHO05D008242 1.6e-30 137.5 161 52.8
Oeu011782.1 Olea europaea HOM05D002102 ORTHO05D008242 1.3e-29 134.4 132 59.1
Actinidia31357 Actinidia chinensis HOM05D002102 ORTHO05D008242 1.0e-26 124.8 120 58.3
C02p45240 Brassica napus HOM05D002102 ORTHO05D008242 3.0e-26 123.2 145 51.0
ATR0109G022 Amborella trichopoda HOM05D002102 ORTHO05D008242 2.2e-24 117.1 85 69.4
BolC2t10554H Brassica oleracea HOM05D002102 ORTHO05D008242 8.3e-24 115.2 145 50.3
RcHm_v2.0_Chr5g0021961 Rosa chinensis HOM05D002102 ORTHO05D008242 1.4e-23 114.4 65 83.1
HPP92_001768 Vanilla planifolia HOM05D001389 ORTHO05D002892 3.5e-22 109.8 94 57.4
CBR_g21832 Chara braunii HOM05D002102 ORTHO05D008242 3.9e-21 106.3 185 40.0
A02p28510 Brassica napus HOM05D002102 ORTHO05D008242 3.3e-20 103.2 171 38.6
RcHm_v2.0_Chr5g0021881 Rosa chinensis HOM05D002102 ORTHO05D008242 2.3e-18 97.1 85 61.2
Cre06.g280650 Chlamydomonas reinhardtii HOM05D002102 ORTHO05D008242 3.1e-18 96.7 193 39.4
Eucgr.L03440 Eucalyptus grandis HOM05D002102 ORTHO05D008242 4.0e-18 96.3 67 77.6
RcHm_v2.0_Chr5g0021951 Rosa chinensis HOM05D002102 ORTHO05D008242 2.6e-17 93.6 55 80.0
SEGI_24162 Sequoiadendron giganteum HOM05D002102 ORTHO05D008242 5.8e-17 92.4 93 51.6
Hund01844 Selenicereus undatus HOM05D002102 ORTHO05D008242 2.9e-16 90.1 66 72.7
BcaC03g16684 Brassica carinata HOM05D002102 ORTHO05D008242 2.0e-14 84.0 69 65.2
Actinidia31356 Actinidia chinensis HOM05D002102 ORTHO05D008242 3.3e-12 76.6 60 70.0
BraA02t07887Z Brassica rapa HOM05D002102 ORTHO05D008242 2.1e-11 73.9 106 39.6
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 2.4e-07 60.5 47 59.6
Nitab4.5_0007687g0040 Nicotiana tabacum HOM05D002102 ORTHO05D008242 9.2e-07 58.5 43 62.8


User provided reference genes

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