Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G085500 Prunus persica HOM05D005337 ORTHO05D006567 4.3e-193 679.1 824 100.0
MD10G1258300 Malus domestica HOM05D005337 ORTHO05D006567 1.6e-131 474.6 821 87.1
FAN25G3288 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.2e-107 395.2 825 81.8
FvH4_3g05050 Fragaria vesca HOM05D005337 ORTHO05D006567 2.3e-106 391.0 826 81.7
FAN11G3121 Fragaria x ananassa HOM05D005337 ORTHO05D006567 4.4e-105 386.7 825 81.3
FAN16G3117 Fragaria x ananassa HOM05D005337 ORTHO05D006567 1.1e-103 382.1 825 82.4
Ciclev10014263m.g Citrus clementina HOM05D005337 ORTHO05D006567 1.8e-87 328.2 817 72.8
QL05p055125 Quercus lobata HOM05D005337 ORTHO05D006567 9.5e-76 289.3 812 75.1
ClCG01G024880 Citrullus lanatus HOM05D005337 ORTHO05D006567 2.6e-73 281.2 802 72.8
CSS0008957 Camellia sinensis var. sinensis HOM05D005337 ORTHO05D006567 4.4e-73 280.4 800 76.1
FAN21G3303 Fragaria x ananassa HOM05D005337 ORTHO05D006567 7.5e-73 279.6 425 63.1
Manes.01G172900 Manihot esculenta HOM05D005337 ORTHO05D006567 9.2e-71 272.7 813 69.1
TWI73G0840 Tripterygium wilfordii HOM05D005337 ORTHO05D006567 4.6e-70 270.4 808 76.0
MELO3C007107.2 Cucumis melo HOM05D005337 ORTHO05D006567 1.3e-69 268.9 812 71.1
Peaxi162Scf00045g00242 Petunia axillaris HOM05D005337 ORTHO05D006567 1.3e-69 268.9 830 72.4
Sed0025020 Sechium edule HOM05D005337 ORTHO05D006567 1.3e-69 268.9 806 72.3
Nitab4.5_0002071g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 1.7e-69 268.5 817 70.7
COL.COLO4_31011 Corchorus olitorius HOM05D005337 ORTHO05D006567 1.1e-68 265.8 266 53.0
Glyma.15G090700 Glycine max HOM05D005337 ORTHO05D006567 2.5e-68 264.6 784 76.7
CsaV3_6G052010 Cucumis sativus L. HOM05D005337 ORTHO05D006567 3.3e-68 264.2 815 70.6
Gohir.D10G045100 Gossypium hirsutum HOM05D005337 ORTHO05D006567 3.6e-67 260.8 790 74.7
Glyma.13G221600 Glycine max HOM05D005337 ORTHO05D006567 8.1e-67 259.6 742 79.0
Gohir.A10G043900 Gossypium hirsutum HOM05D005337 ORTHO05D006567 1.4e-66 258.8 790 74.6
CiPaw.09G119800 Carya illinoinensis HOM05D005337 ORTHO05D006567 6.8e-66 256.5 696 83.6
THA.LOC104820664 Tarenaya hassleriana HOM05D005337 ORTHO05D006567 1.2e-65 255.8 789 76.7
Nitab4.5_0000315g0050 Nicotiana tabacum HOM05D005337 ORTHO05D006567 2.6e-65 254.6 724 76.7
Eucgr.E02454 Eucalyptus grandis HOM05D005337 ORTHO05D006567 7.6e-65 253.1 670 81.5
TAR624G0614 Trochodendron aralioides HOM05D005337 ORTHO05D006567 1.7e-64 251.9 788 73.7
Dinv21523 Davidia involucrata HOM05D005337 ORTHO05D006567 6.4e-64 250.0 268 53.4
Thecc.06G144500 Theobroma cacao HOM05D005337 ORTHO05D006567 1.1e-63 249.2 268 53.7
Gorai.011G048000 Gossypium raimondii HOM05D005337 ORTHO05D006567 2.4e-63 248.1 739 77.9
Cfa000901 Carpinus fangiana HOM05D005337 ORTHO05D006567 4.1e-63 247.3 696 83.6
arahy.Tifrunner.gnm1.ann1.WGPX7I Arachis hypogaea HOM05D005337 ORTHO05D006567 9.2e-63 246.1 806 74.7
arahy.Tifrunner.gnm1.ann1.QR7D30 Arachis hypogaea HOM05D005337 ORTHO05D006567 2.1e-62 245.0 674 84.3
PGR035G0002 Punica granatum HOM05D005337 ORTHO05D006567 7.8e-62 243.0 781 75.3
arahy.Tifrunner.gnm1.ann1.RN8PQ8 Arachis hypogaea HOM05D005337 ORTHO05D006567 1.3e-61 242.3 721 81.3
Haze_05675 Corylus avellana HOM05D005337 ORTHO05D006567 2.3e-61 241.5 239 61.9
Sp1g26130 Schrenkiella parvula HOM05D005337 ORTHO05D006567 2.3e-61 241.5 688 80.7
Duzib235G0011 Durio zibethinus HOM05D005337 ORTHO05D006567 1.1e-60 239.2 198 62.6
Lj2C569T6 Lonicera japonica HOM05D005337 ORTHO05D006567 1.5e-60 238.8 769 73.5
TAR624G0918 Trochodendron aralioides HOM05D005337 ORTHO05D006567 1.5e-60 238.8 252 57.1
CAN.G36.25 Capsicum annuum HOM05D005337 ORTHO05D006567 3.3e-60 237.7 823 68.8
Lj6g0017822 Lotus japonicus HOM05D005337 ORTHO05D006567 1.2e-59 235.7 802 74.2
Nn3g20334 Nelumbo nucifera HOM05D005337 ORTHO05D006567 1.6e-59 235.3 300 51.3
Sc05g0006000 Simmondsia chinensis HOM05D005337 ORTHO05D006567 1.1e-58 232.6 280 52.1
Psat3g019680 Pisum sativum HOM05D005337 ORTHO05D006567 1.4e-58 232.3 770 76.5
Solyc08g023490.4 Solanum lycopersicum HOM05D005337 ORTHO05D006567 1.8e-58 231.9 708 78.0
MSTRG.7512 Avicennia marina HOM05D005337 ORTHO05D006567 2.4e-58 231.5 787 62.9
Medtr2g018550 Medicago truncatula HOM05D005337 ORTHO05D006567 3.1e-58 231.1 251 51.4
TPR.G4722 Trifolium pratense HOM05D005337 ORTHO05D006567 6.8e-58 229.9 265 50.9
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 8.9e-58 229.6 676 80.5
Sopen08g008640 Solanum pennellii HOM05D005337 ORTHO05D006567 1.5e-57 228.8 754 74.3
RcHm_v2.0_Chr5g0014911 Rosa chinensis HOM05D005337 ORTHO05D006567 3.4e-57 227.6 123 88.6
PGSC0003DMG400002287 Solanum tuberosum HOM05D005337 ORTHO05D006567 3.4e-57 227.6 707 76.8
DCAR_004624 Daucus carota HOM05D005337 ORTHO05D000307 7.6e-57 226.5 768 71.9
CANSAT35G0686 Cannabis sativa HOM05D005337 ORTHO05D006567 2.9e-56 224.6 214 58.9
Phvul.006G168127 Phaseolus vulgaris HOM05D005337 ORTHO05D006567 2.9e-56 224.6 238 55.0
vmacro03433 Vaccinium macrocarpon HOM05D005337 ORTHO05D006567 8.4e-56 223.0 247 50.6
VMungo0540G1354 Vigna mungo HOM05D005337 ORTHO05D006567 4.2e-55 220.7 218 56.0
Cc11_g05070 Coffea canephora HOM05D005337 ORTHO05D006567 7.1e-55 219.9 788 72.3
CARHR029680 Cardamine hirsuta HOM05D005337 ORTHO05D006567 9.3e-55 219.5 789 73.6
Aa31LG6G5450 Aethionema arabicum HOM05D005337 ORTHO05D006567 1.6e-54 218.8 689 70.5
Hund17688 Selenicereus undatus HOM05D005337 ORTHO05D006567 2.1e-54 218.4 279 48.0
Actinidia13442 Actinidia chinensis HOM05D005337 ORTHO05D006567 2.7e-54 218.0 184 60.3
RcHm_v2.0_Chr3g0490541 Rosa chinensis HOM05D005337 ORTHO05D006567 4.6e-54 217.2 129 79.8
Atru.BG.302.p Acer truncatum HOM05D005337 ORTHO05D006567 1.7e-53 215.3 125 80.8
BcaC05g27061 Brassica carinata HOM05D005337 ORTHO05D006567 1.7e-53 215.3 174 63.8
BolC5t31652H Brassica oleracea HOM05D005337 ORTHO05D006567 1.7e-53 215.3 174 63.8
C05p29200 Brassica napus HOM05D005337 ORTHO05D006567 2.3e-53 214.9 174 63.8
GSVIVG01021547001 Vitis vinifera HOM05D005337 ORTHO05D006567 3.0e-53 214.5 818 67.4
Carub.0001s2852 Capsella rubella HOM05D005337 ORTHO05D006567 5.1e-53 213.8 805 72.3
Migut.M00881 Erythranthe guttata HOM05D005337 ORTHO05D006567 8.7e-53 213.0 279 49.8
Rhsim09G0050900 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.1e-52 212.6 809 63.9
AL1G44240 Arabidopsis lyrata HOM05D005337 ORTHO05D006567 1.5e-52 212.2 788 72.0
RcHm_v2.0_Chr3g0490551 Rosa chinensis HOM05D005337 ORTHO05D006567 2.5e-52 211.5 124 83.9
BcaB07g32639 Brassica carinata HOM05D005337 ORTHO05D006567 3.3e-52 211.1 245 55.1
Ah.01g015050 Amaranthus hybridus HOM05D005337 ORTHO05D006567 9.6e-52 209.5 286 45.1
BcaC05g27058 Brassica carinata HOM05D005337 ORTHO05D006567 9.6e-52 209.5 174 62.1
BolC5t31647H Brassica oleracea HOM05D005337 ORTHO05D006567 9.6e-52 209.5 174 62.1
Thhalv10006807m.g Eutrema salsugineum HOM05D005337 ORTHO05D006567 1.3e-51 209.1 147 70.1
BraA09t39143Z Brassica rapa HOM05D005337 ORTHO05D006567 1.6e-51 208.8 804 70.1
AUR62017465 Chenopodium quinoa HOM05D005337 ORTHO05D006567 1.6e-51 208.8 131 74.8
Cfa000900 Carpinus fangiana HOM05D005337 ORTHO05D006567 2.1e-51 208.4 816 72.1
AT1G30290 Arabidopsis thaliana HOM05D005337 ORTHO05D006567 3.6e-51 207.6 250 52.0
SalBow8G2351 Salvia bowleyana HOM05D005337 ORTHO05D006567 4.8e-51 207.2 242 49.6
C05p29160 Brassica napus HOM05D005337 ORTHO05D006567 8.1e-51 206.5 174 61.5
AUR62025016 Chenopodium quinoa HOM05D005337 ORTHO05D006567 1.1e-50 206.1 131 74.0
Potri.011G082300 Populus trichocarpa HOM05D005337 ORTHO05D006567 1.1e-50 206.1 828 74.0
EL10Ac9g22478 Beta vulgaris HOM05D005337 ORTHO05D006567 1.4e-50 205.7 218 53.7
ATR1098G077 Amborella trichopoda HOM05D005337 ORTHO05D006567 5.3e-50 203.8 663 83.1
MBI18_g11220_MAGBIO Magnolia biondii HOM05D005337 ORTHO05D006567 5.3e-50 203.8 147 70.7
A09p36160 Brassica napus HOM05D005337 ORTHO05D006567 1.2e-49 202.6 803 70.4
FAN21G0118 Fragaria x ananassa HOM05D005337 ORTHO05D006567 4.4e-49 200.7 109 89.9
Sabra11G0065300 Salix brachista HOM05D005337 ORTHO05D006567 7.6e-49 199.9 680 84.7
PSO384G4021 Papaver somniferum HOM05D005337 ORTHO05D006567 1.9e-47 195.3 140 67.1
QL07p034390 Quercus lobata HOM05D005337 ORTHO05D006567 7.1e-47 193.4 120 76.7
Aqoxy6G00107 Aquilegia oxysepala HOM05D005337 ORTHO05D006567 4.6e-46 190.7 124 74.2
HanXRQChr04g0116581 Helianthus annuus HOM05D005337 ORTHO05D006567 7.9e-46 189.9 662 82.0
CDE05G0694 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 6.6e-45 186.8 178 53.4
CDE02G1473 Ceratophyllum demersum HOM05D005337 ORTHO05D006567 8.7e-45 186.4 186 53.2
SGA_v2.0_scaffold223G42824 Striga asiatica HOM05D005337 ORTHO05D006567 9.6e-44 183.0 140 65.0
HPP92_001622 Vanilla planifolia HOM05D005337 ORTHO05D006567 9.6e-44 183.0 170 56.5
Cpa.g.sc17.49 Carica papaya HOM05D005337 ORTHO05D006567 1.2e-41 176.0 635 80.2
SHI24905 Sapria himalayana HOM05D005337 ORTHO05D006567 5.8e-41 173.7 200 49.5
A09p36200 Brassica napus HOM05D005337 ORTHO05D006567 2.1e-38 165.2 111 73.0
Lsat_1_v5_gn_7_27480 Lactuca sativa HOM05D005337 ORTHO05D006567 1.3e-37 162.5 115 65.2
CAN.G36.12 Capsicum annuum HOM05D005337 ORTHO05D006567 1.8e-37 162.2 109 72.5
ECA236G3236 Erigeron canadensis HOM05D005337 ORTHO05D006567 8.7e-37 159.8 115 67.0
Rhsim13G0117400 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.3e-35 156.0 101 73.3
unitig_37.g12089 Utricularia gibba HOM05D005337 ORTHO05D006567 6.2e-35 153.7 111 66.7
Oeu032720.1 Olea europaea HOM05D005337 ORTHO05D006567 3.1e-34 151.4 149 54.4
Os12g0615600 Oryza sativa ssp. japonica HOM05D005337 ORTHO05D006567 3.4e-33 147.9 134 60.4
Zm00001eb134800 Zea mays HOM05D005337 ORTHO05D006567 2.9e-32 144.8 138 58.0
TAR624G0810 Trochodendron aralioides HOM05D005337 ORTHO05D006567 7.9e-30 136.7 111 62.2
SEGI_37079 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 1.5e-28 132.5 113 54.0
BolC5t31646H Brassica oleracea HOM05D005337 ORTHO05D006567 4.3e-28 131.0 111 58.6
Ca_00508_v3 Cicer arietinum L. HOM05D005337 ORTHO05D006567 2.1e-27 128.6 106 60.4
Lalb_Chr15g0086601 Lupinus albus HOM05D005337 ORTHO05D006567 2.4e-26 125.2 86 72.1
Ca_18255_v3 Cicer arietinum L. HOM05D000068 ORTHO05D006567 9.0e-26 123.2 84 69.0
Sc05g0005990 Simmondsia chinensis HOM05D005337 ORTHO05D006567 5.8e-25 120.6 81 69.1
Nitab4.5_0000258g0100 Nicotiana tabacum HOM05D005337 ORTHO05D006567 7.6e-25 120.2 171 42.7
Atru.chr10.1089 Acer truncatum HOM05D005337 ORTHO05D006567 6.5e-24 117.1 118 53.4
arahy.Tifrunner.gnm1.ann1.S6HMEC Arachis hypogaea HOM05D005337 ORTHO05D006567 7.1e-23 113.6 85 64.7
BraA09t39145Z Brassica rapa HOM05D005337 ORTHO05D006567 7.9e-22 110.2 92 59.8
arahy.Tifrunner.gnm1.ann1.1U5Z8B Arachis hypogaea HOM05D005337 ORTHO05D006567 7.4e-20 103.6 95 52.6
MD05G1279600 Malus domestica HOM05D005337 ORTHO05D006567 2.0e-17 95.5 49 95.9
arahy.Tifrunner.gnm1.ann1.W21Z3V Arachis hypogaea HOM05D005337 ORTHO05D006567 5.9e-17 94.0 81 60.5
Medtr2g018580 Medicago truncatula HOM05D005337 ORTHO05D006567 3.0e-13 81.6 58 65.5
BcaB07g32630 Brassica carinata HOM05D005337 ORTHO05D006567 5.1e-13 80.9 54 74.1
SEGI_28981 Sequoiadendron giganteum HOM05D005337 ORTHO05D006567 6.7e-13 80.5 64 57.8
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 2.4e-10 72.0 109 33.0
AagrBONN_evm.TU.Sc2ySwM_362.2678__2679 Anthoceros agrestis HOM05D006749 ORTHO05D008352 1.7e-08 65.9 100 42.0
Peaxi162Scf00046g00155 Petunia axillaris HOM05D006740 ORTHO05D008571 1.9e-07 62.4 154 26.6
Nn5g27420 Nelumbo nucifera HOM05D006740 ORTHO05D008571 5.5e-07 60.8 101 30.7
CAN.G771.41 Capsicum annuum HOM05D006740 ORTHO05D008571 9.4e-07 60.1 110 26.4
MSTRG.19161 Avicennia marina HOM05D006740 ORTHO05D008571 1.2e-06 59.7 126 26.2
Sed0019079 Sechium edule HOM05D006740 ORTHO05D008571 1.2e-06 59.7 95 32.6
Lj2C113T11 Lonicera japonica HOM05D006740 ORTHO05D008571 2.1e-06 58.9 110 27.3
Sed0004940 Sechium edule HOM05D006740 ORTHO05D008571 2.7e-06 58.5 95 31.6
Solyc12g019290.1 Solanum lycopersicum HOM05D006740 ORTHO05D008571 2.7e-06 58.5 134 24.6
Sopen12g009600 Solanum pennellii HOM05D006740 ORTHO05D008571 2.7e-06 58.5 134 24.6
ECA233G5048 Erigeron canadensis HOM05D006926 ORTHO05D008863 3.6e-06 58.2 136 30.1
PGSC0003DMG400020392 Solanum tuberosum HOM05D006740 ORTHO05D008571 3.6e-06 58.2 134 24.6
TWI15G0380 Tripterygium wilfordii HOM05D004079 ORTHO05D005437 3.6e-06 58.2 96 36.5
Glyma.02G298900 Glycine max HOM05D006926 ORTHO05D008863 4.7e-06 57.8 118 29.7
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 4.7e-06 57.8 116 30.2
ClCG06G012850 Citrullus lanatus HOM05D006740 ORTHO05D008571 6.1e-06 57.4 103 29.1
DCAR_017698 Daucus carota HOM05D006740 ORTHO05D008571 6.1e-06 57.4 110 27.3
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 6.1e-06 57.4 116 29.3
Lsat_1_v5_gn_6_30921 Lactuca sativa HOM05D006740 ORTHO05D008571 6.1e-06 57.4 110 28.2
MD08G1066700 Malus domestica HOM05D006926 ORTHO05D008863 6.1e-06 57.4 117 31.6
Nitab4.5_0003215g0040 Nicotiana tabacum HOM05D006740 ORTHO05D008571 6.1e-06 57.4 110 25.5
Aqoxy2G00263 Aquilegia oxysepala HOM05D005973 ORTHO05D007285 7.9e-06 57.0 116 29.3


User provided reference genes

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