Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G084200 Prunus persica HOM05D004841 ORTHO05D005874 3.0e-193 678.3 342 100.0
MD05G1280700 Malus domestica HOM05D004841 ORTHO05D005874 1.0e-172 610.1 338 89.6
MD10G1259100 Malus domestica HOM05D004841 ORTHO05D005874 5.7e-168 594.3 338 86.1
RcHm_v2.0_Chr5g0014571 Rosa chinensis HOM05D004841 ORTHO05D005874 1.1e-155 553.5 341 80.4
FAN11G3214 Fragaria x ananassa HOM05D004841 ORTHO05D005874 3.1e-153 545.4 342 79.5
FvH4_3g05180 Fragaria vesca HOM05D004841 ORTHO05D005874 6.8e-153 544.3 342 79.2
FAN16G1445 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.0e-152 542.7 342 78.9
FAN21G1690 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.0e-152 542.7 342 79.2
FAN25G3271 Fragaria x ananassa HOM05D004841 ORTHO05D005874 2.6e-152 542.3 342 79.2
FAN16G2733 Fragaria x ananassa HOM05D004841 ORTHO05D005874 1.2e-149 533.5 328 80.2
CANSAT11G1247 Cannabis sativa HOM05D004841 ORTHO05D005874 2.3e-145 519.2 340 74.1
Sed0021741 Sechium edule HOM05D004841 ORTHO05D005874 2.4e-142 509.2 333 74.2
CiPaw.10G089600 Carya illinoinensis HOM05D004841 ORTHO05D005874 3.2e-142 508.8 343 75.5
QL05p055481 Quercus lobata HOM05D004841 ORTHO05D005874 7.1e-142 507.7 344 75.3
Manes.17G073300 Manihot esculenta HOM05D004841 ORTHO05D005874 1.6e-141 506.5 340 73.5
CiPaw.09G120900 Carya illinoinensis HOM05D004841 ORTHO05D005874 1.7e-140 503.1 341 76.0
GSVIVG01034157001 Vitis vinifera HOM05D004841 ORTHO05D005874 2.1e-138 496.1 340 72.4
MELO3C007114.2 Cucumis melo HOM05D004841 ORTHO05D005874 3.6e-138 495.4 334 73.7
CsaV3_6G051930 Cucumis sativus L. HOM05D004841 ORTHO05D005874 4.7e-138 495.0 334 73.1
Duzib235G0160 Durio zibethinus HOM05D004841 ORTHO05D005874 8.1e-138 494.2 339 72.6
Atru.chr10.1099 Acer truncatum HOM05D004841 ORTHO05D005874 1.1e-137 493.8 336 73.2
Cfa000914 Carpinus fangiana HOM05D004841 ORTHO05D005874 3.1e-137 492.3 341 73.6
Haze_05641 Corylus avellana HOM05D004841 ORTHO05D005874 5.8e-136 488.0 344 72.4
Hma1.2p1_0594F.1_g185890 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 9.9e-136 487.3 340 69.4
PGR031G1170 Punica granatum HOM05D004841 ORTHO05D005874 4.9e-135 485.0 342 71.9
Potri.012G107400 Populus trichocarpa HOM05D004841 ORTHO05D005874 6.4e-135 484.6 337 72.4
TWI63G0939 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 8.4e-135 484.2 339 70.8
CSS0019612 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.1e-134 483.8 339 69.0
CSS0027900 Camellia sinensis var. sinensis HOM05D004841 ORTHO05D005874 1.1e-134 483.8 339 69.0
Gohir.D10G043800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 1.1e-134 483.8 339 71.4
THA.LOC104821761 Tarenaya hassleriana HOM05D004841 ORTHO05D005874 1.9e-134 483.0 344 70.6
Gohir.A10G042800 Gossypium hirsutum HOM05D004841 ORTHO05D005874 4.1e-134 481.9 339 71.4
TWI34G1122 Tripterygium wilfordii HOM05D004841 ORTHO05D005874 5.4e-134 481.5 333 71.8
Gorai.011G046600 Gossypium raimondii HOM05D004841 ORTHO05D005874 1.2e-133 480.3 333 71.2
COL.COLO4_31030 Corchorus olitorius HOM05D004841 ORTHO05D005874 2.1e-133 479.6 339 69.9
Ciclev10015824m.g Citrus clementina HOM05D004841 ORTHO05D005874 5.1e-132 474.9 341 69.5
Thhalv10018816m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 1.5e-131 473.4 339 69.3
Thecc.06G146500 Theobroma cacao HOM05D004841 ORTHO05D005874 3.3e-131 472.2 339 69.6
BcaB05g24290 Brassica carinata HOM05D004841 ORTHO05D005874 4.3e-131 471.9 330 69.4
Sp5g22530 Schrenkiella parvula HOM05D004841 ORTHO05D005874 5.6e-131 471.5 338 68.6
A07p34060 Brassica napus HOM05D004841 ORTHO05D005874 9.6e-131 470.7 339 68.1
AT1G65030 Arabidopsis thaliana HOM05D004841 ORTHO05D005874 1.2e-130 470.3 342 68.1
A02p14280 Brassica napus HOM05D004841 ORTHO05D005874 1.2e-130 470.3 341 66.9
Eucgr.E02427 Eucalyptus grandis HOM05D004841 ORTHO05D005874 1.2e-130 470.3 334 69.2
BraA07t31032Z Brassica rapa HOM05D004841 ORTHO05D005874 1.6e-130 469.9 344 67.2
BraA02t06489Z Brassica rapa HOM05D004841 ORTHO05D005874 2.1e-130 469.5 341 66.6
BolC2t08451H Brassica oleracea HOM05D004841 ORTHO05D005874 2.8e-130 469.2 339 68.4
C06p42730 Brassica napus HOM05D004841 ORTHO05D005874 3.6e-130 468.8 339 67.8
BcaB03g15189 Brassica carinata HOM05D004841 ORTHO05D005874 8.1e-130 467.6 339 67.8
Sabra13G0019700 Salix brachista HOM05D000092 ORTHO05D005874 1.4e-129 466.8 319 72.4
Aa31LG2G2230 Aethionema arabicum HOM05D004841 ORTHO05D005874 2.4e-129 466.1 339 66.7
C02p23090 Brassica napus HOM05D004841 ORTHO05D005874 3.1e-129 465.7 339 68.1
CARHR056500 Cardamine hirsuta HOM05D004841 ORTHO05D005874 3.1e-129 465.7 336 67.6
AL2G19660 Arabidopsis lyrata HOM05D004841 ORTHO05D005874 6.9e-129 464.5 345 67.2
Carub.0002s1024 Capsella rubella HOM05D004841 ORTHO05D005874 1.2e-128 463.8 343 67.1
ClCG01G024810 Citrullus lanatus HOM05D004841 ORTHO05D005874 1.2e-128 463.8 334 71.3
Rhsim13G0116700 Rhododendron simsii HOM05D004841 ORTHO05D005874 1.5e-128 463.4 340 67.6
C06p42780 Brassica napus HOM05D004841 ORTHO05D005874 2.0e-128 463.0 339 67.6
MSTRG.7507 Avicennia marina HOM05D004841 ORTHO05D005874 7.6e-128 461.1 337 66.2
vmacro03353 Vaccinium macrocarpon HOM05D004841 ORTHO05D005874 9.9e-128 460.7 339 67.3
Lalb_Chr11g0073321 Lupinus albus HOM05D004841 ORTHO05D005874 1.4e-126 456.8 334 69.8
DCAR_027897 Daucus carota HOM05D004841 ORTHO05D005874 5.4e-126 454.9 337 67.1
BolC6t39162H Brassica oleracea HOM05D004841 ORTHO05D005874 7.1e-126 454.5 368 62.8
Migut.M00886 Erythranthe guttata HOM05D004841 ORTHO05D005874 1.6e-125 453.4 338 66.3
Dinv21532 Davidia involucrata HOM05D004841 ORTHO05D005874 1.3e-124 450.3 342 66.7
Nitab4.5_0004020g0010 Nicotiana tabacum HOM05D004841 ORTHO05D005874 2.3e-124 449.5 328 67.4
Solyc02g078830.4 Solanum lycopersicum HOM05D004841 ORTHO05D005874 2.3e-124 449.5 340 65.6
PGSC0003DMG400022420 Solanum tuberosum HOM05D004841 ORTHO05D005874 3.0e-124 449.1 340 65.3
Sopen02g023650 Solanum pennellii HOM05D004841 ORTHO05D005874 1.1e-123 447.2 340 65.0
Psat1g020080 Pisum sativum HOM05D004841 ORTHO05D005874 1.5e-123 446.8 335 68.7
Ca_03447_v3 Cicer arietinum L. HOM05D004841 ORTHO05D005874 5.6e-123 444.9 333 68.2
arahy.Tifrunner.gnm1.ann1.0DR3QG Arachis hypogaea HOM05D004841 ORTHO05D005874 1.3e-122 443.7 334 68.0
arahy.Tifrunner.gnm1.ann1.9IA9LY Arachis hypogaea HOM05D004841 ORTHO05D005874 2.1e-122 443.0 319 69.9
TPR.G29935 Trifolium pratense HOM05D004841 ORTHO05D005874 2.1e-122 443.0 336 68.5
HanXRQChr17g0564621 Helianthus annuus HOM05D004841 ORTHO05D005874 2.8e-122 442.6 340 65.9
Nitab4.5_0000501g0020 Nicotiana tabacum HOM05D004841 ORTHO05D005874 2.8e-122 442.6 340 65.3
Lsat_1_v5_gn_4_29561 Lactuca sativa HOM05D004841 ORTHO05D005874 1.8e-121 439.9 343 64.7
arahy.Tifrunner.gnm1.ann1.V1DCF9 Arachis hypogaea HOM05D004841 ORTHO05D005874 4.0e-121 438.7 319 69.9
arahy.Tifrunner.gnm1.ann1.4L8DWS Arachis hypogaea HOM05D004841 ORTHO05D005874 6.9e-121 438.0 341 66.6
TAR628G1076 Trochodendron aralioides HOM05D004841 ORTHO05D005874 6.9e-121 438.0 336 65.5
Peaxi162Scf00465g00119 Petunia axillaris HOM05D004841 ORTHO05D005874 9.0e-121 437.6 339 64.3
MBI02_g29870_MAGBIO Magnolia biondii HOM05D004841 ORTHO05D005874 7.6e-120 434.5 333 64.6
BcaNung05075 Brassica carinata HOM05D004841 ORTHO05D005874 1.3e-119 433.7 339 64.3
Medtr2g049300 Medicago truncatula HOM05D004841 ORTHO05D005874 1.7e-119 433.3 333 67.0
Actinidia01573 Actinidia chinensis HOM05D004841 ORTHO05D005874 6.4e-119 431.4 342 63.5
Cc02_g29720 Coffea canephora HOM05D004841 ORTHO05D005874 1.1e-118 430.6 331 64.7
SGA_v2.0_scaffold146G36131 Striga asiatica HOM05D004841 ORTHO05D005874 7.1e-118 427.9 319 67.4
Nn3g20436 Nelumbo nucifera HOM05D004841 ORTHO05D005874 3.5e-117 425.6 327 62.7
Oeu013128.1 Olea europaea HOM05D004841 ORTHO05D005874 6.0e-117 424.9 338 63.0
Glyma.15G195000 Glycine max HOM05D004841 ORTHO05D005874 7.9e-117 424.5 333 66.4
Glyma.09G086200 Glycine max HOM05D004841 ORTHO05D005874 1.1e-115 420.6 329 66.3
ECA234G4271 Erigeron canadensis HOM05D004841 ORTHO05D005874 4.3e-115 418.7 339 61.7
Lj6g0003285 Lotus japonicus HOM05D004841 ORTHO05D005874 5.6e-115 418.3 340 63.2
VMungo1309G2918 Vigna mungo HOM05D004841 ORTHO05D005874 1.8e-113 413.3 343 64.4
Phvul.009G215400 Phaseolus vulgaris HOM05D004841 ORTHO05D005874 3.1e-113 412.5 340 62.9
Sc02g0001540 Simmondsia chinensis HOM05D004841 ORTHO05D005874 4.0e-113 412.1 321 62.6
Lj2A321T65 Lonicera japonica HOM05D004841 ORTHO05D005874 9.0e-113 411.0 319 63.9
EL10Ac7g16662 Beta vulgaris HOM05D004841 ORTHO05D005874 5.8e-112 408.3 335 62.7
Ah.08g211520 Amaranthus hybridus HOM05D004841 ORTHO05D005874 8.4e-111 404.4 328 62.8
Hund20587 Selenicereus undatus HOM05D004841 ORTHO05D005874 4.2e-110 402.1 341 60.4
PSO541G1633 Papaver somniferum HOM05D004841 ORTHO05D005874 2.1e-106 389.8 333 57.7
PSO675G7289 Papaver somniferum HOM05D004841 ORTHO05D005874 2.1e-106 389.8 333 57.7
Dinv32222 Davidia involucrata HOM05D004841 ORTHO05D005874 4.5e-104 382.1 261 70.5
Aqoxy5G03944 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 1.1e-102 377.5 336 56.2
SalBow8G2637 Salvia bowleyana HOM05D004841 ORTHO05D005874 1.6e-101 373.6 338 58.3
SHI02861 Sapria himalayana HOM05D004841 ORTHO05D005874 1.6e-101 373.6 286 65.0
PSO017G5522 Papaver somniferum HOM05D004841 ORTHO05D005874 7.9e-101 371.3 323 58.2
Aqoxy7G03441 Aquilegia oxysepala HOM05D004841 ORTHO05D005874 2.3e-100 369.8 319 57.4
HPP92_012189 Vanilla planifolia HOM05D004841 ORTHO05D005874 2.5e-99 366.3 318 55.7
AUR62026924 Chenopodium quinoa HOM05D004841 ORTHO05D005874 3.4e-88 329.3 252 63.9
Zm00001eb328580 Zea mays HOM05D004841 ORTHO05D005874 1.8e-84 317.0 332 53.3
SEGI_08519 Sequoiadendron giganteum HOM05D004841 ORTHO05D005874 1.5e-80 303.9 351 43.6
ATR0772G214 Amborella trichopoda HOM05D004841 ORTHO05D005874 2.2e-79 300.1 322 45.3
Mapoly0001s0498 Marchantia polymorpha HOM05D004841 ORTHO05D005874 1.8e-68 263.8 320 41.2
BcaNung05072 Brassica carinata HOM05D004841 ORTHO05D005874 3.5e-64 249.6 184 66.3
BcaNung05071 Brassica carinata HOM05D004841 ORTHO05D005874 5.9e-64 248.8 184 66.3
CDE07G1158 Ceratophyllum demersum HOM05D004841 ORTHO05D005874 8.5e-63 245.0 226 54.4
Os12g0615900 Oryza sativa ssp. japonica HOM05D004841 ORTHO05D005874 2.3e-60 236.9 251 52.6
AUR62042056 Chenopodium quinoa HOM05D004841 ORTHO05D005874 1.2e-59 234.6 174 64.4
SMO358G0291 Selaginella moellendorffii HOM05D004841 ORTHO05D005874 6.6e-55 218.8 319 38.9
Sabra13G0018400 Salix brachista HOM05D004841 ORTHO05D004358 8.9e-52 208.4 145 66.9
Cpa.g.sc17.34 Carica papaya HOM05D004841 ORTHO05D005874 3.7e-50 203.0 135 74.8
unitig_749.g13802 Utricularia gibba HOM05D004841 ORTHO05D005874 3.1e-49 199.9 161 64.6
Cre03.g205800 Chlamydomonas reinhardtii HOM05D004841 ORTHO05D005874 2.9e-42 176.8 291 36.4
Oeu062572.1 Olea europaea HOM05D004841 ORTHO05D005874 4.9e-42 176.0 143 61.5
Sabra13G0018300 Salix brachista HOM05D004841 ORTHO05D005874 2.7e-40 170.2 127 70.9
C06p41890 Brassica napus HOM05D004841 ORTHO05D005874 5.0e-39 166.0 118 68.6
BolC6t39240H Brassica oleracea HOM05D004841 ORTHO05D005874 9.5e-38 161.8 116 68.1
Sabra13G0014000 Salix brachista HOM05D000092 ORTHO05D000042 1.6e-37 161.0 116 71.6
Hma1.2p1_0594F.1_g185900 Hydrangea macrophylla HOM05D004841 ORTHO05D005874 4.7e-37 159.5 100 77.0
unitig_749.g13803 Utricularia gibba HOM05D004841 ORTHO05D005874 5.2e-36 156.0 119 62.2
Sabra13G0014700 Salix brachista HOM05D000070 ORTHO05D000047 6.8e-36 155.6 152 57.9
Sabra13G0015400 Salix brachista HOM05D004841 ORTHO05D005874 6.8e-36 155.6 117 69.2
Sabra13G0014300 Salix brachista HOM05D004841 ORTHO05D005874 2.0e-35 154.1 99 76.8
CBR_g4467 Chara braunii HOM05D004841 ORTHO05D005874 3.2e-33 146.7 284 31.7
MCO15G572 Micromonas commoda HOM05D004841 ORTHO05D005874 3.9e-31 139.8 340 28.8
Pp3c9_24890 Physcomitrium patens HOM05D004841 ORTHO05D005874 3.9e-31 139.8 207 38.2
Cpa.g.c47956 Carica papaya HOM05D004841 ORTHO05D005874 1.5e-30 137.9 98 62.2
Pp3c15_25070 Physcomitrium patens HOM05D004841 ORTHO05D005874 1.6e-29 134.4 171 42.1
Sabra13G0015100 Salix brachista HOM05D004841 ORTHO05D005874 2.3e-28 130.6 84 77.4
Sabra13G0019300 Salix brachista HOM05D004841 ORTHO05D005874 2.3e-28 130.6 84 77.4
Oeu030952.1 Olea europaea HOM05D004841 ORTHO05D005874 8.9e-28 128.6 184 44.6
AagrBONN_evm.TU.Sc2ySwM_117.2336 Anthoceros agrestis HOM05D004841 ORTHO05D005874 2.9e-26 123.6 171 41.5
Thhalv10019798m.g Eutrema salsugineum HOM05D004841 ORTHO05D005874 7.1e-25 119.0 140 48.6
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 4.6e-24 116.3 129 53.5
ATR1098G095 Amborella trichopoda HOM05D004841 ORTHO05D005874 3.9e-23 113.2 165 34.5
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 8.6e-23 112.1 129 52.7
VMungo0331G1481 Vigna mungo HOM05D004841 ORTHO05D005874 2.2e-18 97.4 113 45.1
VMungo1382G0002 Vigna mungo HOM05D004841 ORTHO05D005874 4.2e-17 93.2 97 51.5
Sabra13G0018600 Salix brachista HOM05D004841 ORTHO05D005874 2.3e-15 87.4 79 62.0
Oeu030951.1 Olea europaea HOM05D004841 ORTHO05D005874 1.4e-12 78.2 128 46.1
BcaC03g14843 Brassica carinata HOM05D004841 ORTHO05D005874 2.4e-12 77.4 56 67.9
Actinidia16778 Actinidia chinensis HOM05D004841 ORTHO05D005874 3.4e-11 73.6 57 61.4
BcaC08g46242 Brassica carinata HOM05D004841 ORTHO05D005874 7.8e-08 62.4 40 65.0
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 1.7e-07 61.2 234 29.5
Nitab4.5_0006462g0010 Nicotiana tabacum HOM05D003238 ORTHO05D003571 1.1e-06 58.5 36 77.8
VMungo0712G0001 Vigna mungo HOM05D004841 ORTHO05D005874 4.3e-06 56.6 127 40.9
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 5.6e-06 56.2 287 25.8


User provided reference genes

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