Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G077100 Prunus persica HOM05D004468 ORTHO05D008180 5.0e-134 481.1 243 100.0
MD05G1288800 Malus domestica HOM05D004468 ORTHO05D008180 4.9e-113 411.4 244 87.7
MD10G1264900 Malus domestica HOM05D004468 ORTHO05D008180 5.4e-112 407.9 244 85.7
FvH4_3g06000 Fragaria vesca HOM05D004468 ORTHO05D008180 1.8e-91 339.7 245 73.5
RcHm_v2.0_Chr5g0013411 Rosa chinensis HOM05D004468 ORTHO05D008180 1.5e-90 336.7 247 74.1
FAN11G2204 Fragaria x ananassa HOM05D004468 ORTHO05D008180 9.9e-90 334.0 244 72.5
FAN25G3280 Fragaria x ananassa HOM05D004468 ORTHO05D008180 2.9e-89 332.4 244 72.5
FAN21G2255 Fragaria x ananassa HOM05D004468 ORTHO05D008180 4.9e-89 331.6 244 72.1
FAN16G0098 Fragaria x ananassa HOM05D004468 ORTHO05D008180 3.2e-88 328.9 244 71.7
Manes.15G119000 Manihot esculenta HOM05D004468 ORTHO05D008180 1.1e-80 303.9 237 67.5
Dinv05249 Davidia involucrata HOM05D004468 ORTHO05D008180 5.5e-80 301.6 245 67.3
MD05G1288300 Malus domestica HOM05D004468 ORTHO05D008180 7.1e-80 301.2 220 75.0
MD05G1288000 Malus domestica HOM05D004468 ORTHO05D008180 2.1e-79 299.7 220 74.5
QL05p059278 Quercus lobata HOM05D004468 ORTHO05D008180 1.0e-78 297.4 242 66.5
Potri.011G080000 Populus trichocarpa HOM05D004468 ORTHO05D008180 1.1e-77 293.9 243 66.3
Dinv33636 Davidia involucrata HOM05D004468 ORTHO05D008180 1.5e-77 293.5 245 66.1
Haze_05549 Corylus avellana HOM05D004468 ORTHO05D008180 4.3e-77 292.0 244 66.0
Thecc.06G154000 Theobroma cacao HOM05D004468 ORTHO05D008180 4.3e-77 292.0 242 65.7
Dinv30712 Davidia involucrata HOM05D004468 ORTHO05D008180 5.6e-77 291.6 241 66.0
CiPaw.09G126600 Carya illinoinensis HOM05D004468 ORTHO05D008180 3.1e-75 285.8 241 66.4
Cfa000973 Carpinus fangiana HOM05D004468 ORTHO05D008180 5.3e-75 285.0 243 64.6
Ciclev10016464m.g Citrus clementina HOM05D004468 ORTHO05D008180 6.9e-75 284.6 244 65.2
COL.COLO4_06070 Corchorus olitorius HOM05D004468 ORTHO05D008180 1.6e-71 273.5 242 61.2
Gorai.011G042000 Gossypium raimondii HOM05D004468 ORTHO05D008180 3.9e-70 268.9 239 62.8
Duzib160G0871 Durio zibethinus HOM05D004468 ORTHO05D008180 1.9e-69 266.5 242 59.9
Gohir.A10G039100 Gossypium hirsutum HOM05D004468 ORTHO05D008180 2.5e-69 266.2 239 62.8
Duzib235G1094 Durio zibethinus HOM05D004468 ORTHO05D008180 6.3e-68 261.5 239 62.3
Duzib192G0660 Durio zibethinus HOM05D004468 ORTHO05D008180 8.2e-68 261.2 242 61.6
Atru.chr10.1342 Acer truncatum HOM05D004468 ORTHO05D008180 2.4e-67 259.6 243 60.9
Sabra11G0068700 Salix brachista HOM05D004468 ORTHO05D008180 1.5e-66 256.9 243 59.3
Sabra11G0070800 Salix brachista HOM05D004468 ORTHO05D008180 1.5e-66 256.9 243 59.3
CiPaw.10G093500 Carya illinoinensis HOM05D004468 ORTHO05D008180 3.4e-66 255.8 242 61.6
Gorai.009G156700 Gossypium raimondii HOM05D004468 ORTHO05D008180 5.9e-66 255.0 242 57.9
Gohir.A05G150000 Gossypium hirsutum HOM05D004468 ORTHO05D008180 1.0e-65 254.2 242 57.4
Gohir.D05G152600 Gossypium hirsutum HOM05D004468 ORTHO05D008180 2.2e-65 253.1 242 57.9
Manes.17G067600 Manihot esculenta HOM05D004468 ORTHO05D008180 1.9e-64 250.0 243 58.8
TWI53G1884 Tripterygium wilfordii HOM05D004468 ORTHO05D008180 1.9e-64 250.0 243 59.7
CsaV3_6G051560 Cucumis sativus L. HOM05D004468 ORTHO05D008180 4.3e-61 238.8 248 55.6
Solyc02g070880.1 Solanum lycopersicum HOM05D004468 ORTHO05D008180 1.7e-60 236.9 245 57.1
Sopen02g019960 Solanum pennellii HOM05D004468 ORTHO05D008180 1.7e-60 236.9 245 56.7
PGSC0003DMG400008295 Solanum tuberosum HOM05D004468 ORTHO05D008180 2.8e-60 236.1 245 58.0
Peaxi162Scf00291g00015 Petunia axillaris HOM05D004468 ORTHO05D008180 1.8e-59 233.4 231 58.4
vmacro10945 Vaccinium macrocarpon HOM05D004468 ORTHO05D008180 3.1e-59 232.6 244 58.2
Nitab4.5_0001040g0150 Nicotiana tabacum HOM05D004468 ORTHO05D008180 4.1e-59 232.3 243 58.4
CAN.G257.6 Capsicum annuum HOM05D004468 ORTHO05D008180 1.3e-57 227.3 242 56.6
Sed0007839 Sechium edule HOM05D004468 ORTHO05D008180 1.1e-56 224.2 246 52.4
Aqoxy1G01779 Aquilegia oxysepala HOM05D004468 ORTHO05D008180 3.6e-55 219.2 244 51.6
Hma1.2p1_0164F.1_g073090 Hydrangea macrophylla HOM05D004468 ORTHO05D008180 4.7e-55 218.8 250 55.2
Sed0014650 Sechium edule HOM05D004468 ORTHO05D008180 5.1e-54 215.3 243 51.9
TAR629G0415 Trochodendron aralioides HOM05D004468 ORTHO05D008180 8.8e-54 214.5 247 54.7
Glyma.05G129400 Glycine max HOM05D004468 ORTHO05D008180 2.6e-53 213.0 239 51.5
Ca_18271_v3 Cicer arietinum L. HOM05D004468 ORTHO05D008180 3.3e-53 212.6 239 51.5
RhsimUnG0149400 Rhododendron simsii HOM05D004468 ORTHO05D008180 7.4e-53 211.5 246 54.1
Nn4g26508 Nelumbo nucifera HOM05D004468 ORTHO05D008180 4.1e-51 205.7 216 52.8
TPR.G4895 Trifolium pratense HOM05D004468 ORTHO05D008180 9.1e-51 204.5 241 49.8
Lalb_Chr13g0291991 Lupinus albus HOM05D004468 ORTHO05D008180 1.5e-50 203.8 238 53.4
Sc17g0005060 Simmondsia chinensis HOM05D004468 ORTHO05D008180 2.0e-50 203.4 241 51.9
Phvul.002G194400 Phaseolus vulgaris HOM05D004468 ORTHO05D008180 5.9e-50 201.8 240 48.3
Psat7g090880 Pisum sativum HOM05D004468 ORTHO05D008180 2.2e-49 199.9 241 49.4
Oeu052384.1 Olea europaea HOM05D004468 ORTHO05D008180 2.9e-49 199.5 243 50.2
Gohir.D10G039900 Gossypium hirsutum HOM05D004468 ORTHO05D008180 5.0e-49 198.7 239 54.0
Cc09_g09510 Coffea canephora HOM05D004468 ORTHO05D008180 7.2e-48 194.9 241 51.5
THA.LOC104820641 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 9.4e-48 194.5 249 49.8
Medtr4g096660 Medicago truncatula HOM05D004468 ORTHO05D008180 1.4e-46 190.7 262 45.8
Glyma.08G084100 Glycine max HOM05D004468 ORTHO05D008180 2.3e-46 189.9 241 47.7
SalBow6G4733 Salvia bowleyana HOM05D004468 ORTHO05D008180 5.2e-46 188.7 210 52.9
SalBow7G0317 Salvia bowleyana HOM05D004468 ORTHO05D008180 5.2e-46 188.7 210 52.9
PSO541G2725 Papaver somniferum HOM05D004468 ORTHO05D008180 6.7e-46 188.3 244 48.0
arahy.Tifrunner.gnm1.ann1.2E3FWC Arachis hypogaea HOM05D004468 ORTHO05D008180 1.5e-45 187.2 226 50.4
VMungo0251G1661 Vigna mungo HOM05D004468 ORTHO05D008180 1.5e-45 187.2 241 46.9
Hund21515 Selenicereus undatus HOM05D004468 ORTHO05D008180 3.3e-45 186.0 244 49.2
MSTRG.14764 Avicennia marina HOM05D004468 ORTHO05D008180 9.7e-45 184.5 242 47.1
PSO675G1482 Papaver somniferum HOM05D004468 ORTHO05D008180 5.3e-43 178.7 244 46.7
MSTRG.13248 Avicennia marina HOM05D004468 ORTHO05D008180 1.2e-42 177.6 245 46.5
CANSAT35G0919 Cannabis sativa HOM05D004468 ORTHO05D008180 1.6e-42 177.2 246 46.7
Lj4g0016525 Lotus japonicus HOM05D004468 ORTHO05D008180 2.6e-42 176.4 239 48.5
Thhalv10009888m.g Eutrema salsugineum HOM05D004468 ORTHO05D008180 3.8e-41 172.6 250 46.8
Sp1g25810 Schrenkiella parvula HOM05D004468 ORTHO05D008180 5.5e-40 168.7 248 44.8
Migut.H01376 Erythranthe guttata HOM05D004468 ORTHO05D008180 8.0e-39 164.9 235 44.3
BcaB03g13850 Brassica carinata HOM05D004468 ORTHO05D008180 1.8e-38 163.7 246 46.3
THA.LOC104812665 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 4.0e-38 162.5 244 44.7
Nitab4.5_0001655g0240 Nicotiana tabacum HOM05D004468 ORTHO05D008180 1.5e-37 160.6 241 44.8
AL1G43790 Arabidopsis lyrata HOM05D004468 ORTHO05D008180 7.5e-37 158.3 248 45.2
MD05G1288500 Malus domestica HOM05D004468 ORTHO05D008180 7.5e-37 158.3 112 79.5
Dinv32278 Davidia involucrata HOM05D004468 ORTHO05D011136 1.1e-35 154.5 131 61.1
RhsimUnG0174800 Rhododendron simsii HOM05D004468 ORTHO05D008180 1.1e-35 154.5 226 46.0
Actinidia39559 Actinidia chinensis HOM05D004468 ORTHO05D008180 4.1e-35 152.5 245 44.1
Nn3g20652 Nelumbo nucifera HOM05D004468 ORTHO05D008180 1.6e-34 150.6 166 51.8
Oeu040960.2 Olea europaea HOM05D004468 ORTHO05D008180 5.9e-34 148.7 205 46.3
Lj1P1184T76 Lonicera japonica HOM05D004468 ORTHO05D008180 3.8e-33 146.0 207 46.9
C07p15630 Brassica napus HOM05D004468 ORTHO05D008180 2.7e-31 139.8 246 42.3
Actinidia07680 Actinidia chinensis HOM05D004468 ORTHO05D011136 4.7e-31 139.0 220 44.5
MELO3C007151.2 Cucumis melo HOM05D004468 ORTHO05D008180 8.0e-31 138.3 247 38.9
QL05p059480 Quercus lobata HOM05D004468 ORTHO05D008180 1.8e-30 137.1 137 58.4
Os02g0315600 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 1.2e-29 134.4 211 40.8
A08p24790 Brassica napus HOM05D004468 ORTHO05D008180 1.5e-29 134.0 247 39.3
BraA08t34433Z Brassica rapa HOM05D004468 ORTHO05D008180 1.5e-29 134.0 247 39.3
Lsat_1_v5_gn_1_96101 Lactuca sativa HOM05D004468 ORTHO05D008180 2.0e-29 133.7 198 48.0
THA.LOC104814285 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 9.8e-29 131.3 250 38.0
BcaC01g00145 Brassica carinata HOM05D004468 ORTHO05D008180 4.8e-28 129.0 248 39.5
CARHR029490 Cardamine hirsuta HOM05D004468 ORTHO05D008180 8.3e-28 128.3 248 37.5
Carub.0001s2818 Capsella rubella HOM05D004468 ORTHO05D008180 2.4e-27 126.7 264 36.7
Os01g0626900 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 2.4e-27 126.7 221 41.6
BcaC06g35475 Brassica carinata HOM05D004468 ORTHO05D008180 3.1e-27 126.3 245 40.0
C03p76270 Brassica napus HOM05D004468 ORTHO05D008180 3.1e-27 126.3 247 38.9
BolC3t19884H Brassica oleracea HOM05D004468 ORTHO05D008180 3.1e-27 126.3 247 38.9
BolC7t42051H Brassica oleracea HOM05D004468 ORTHO05D008180 3.1e-27 126.3 245 40.0
CDE02G0697 Ceratophyllum demersum HOM05D004468 ORTHO05D008180 3.1e-27 126.3 202 40.6
AT1G29950 Arabidopsis thaliana HOM05D004468 ORTHO05D008180 1.2e-26 124.4 249 36.5
Os03g0591300 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 5.0e-25 119.0 211 40.3
BcaB03g12186 Brassica carinata HOM05D004468 ORTHO05D008180 1.5e-24 117.5 249 36.9
Zm00001eb384990 Zea mays HOM05D004468 ORTHO05D008180 2.5e-24 116.7 212 40.1
unitig_8.g4884 Utricularia gibba HOM05D004468 ORTHO05D008180 3.3e-24 116.3 197 38.1
A07p10110 Brassica napus HOM05D004468 ORTHO05D008180 1.7e-20 104.0 239 35.6
Eucgr.D00317 Eucalyptus grandis HOM05D004468 ORTHO05D008180 1.4e-19 100.9 237 32.1
Lsat_1_v5_gn_7_32861 Lactuca sativa HOM05D004468 ORTHO05D008180 4.1e-19 99.4 199 38.7
HanXRQChr04g0118301 Helianthus annuus HOM05D004468 ORTHO05D008180 2.7e-18 96.7 209 38.8
ECA236G0629 Erigeron canadensis HOM05D004468 ORTHO05D011136 3.3e-16 89.7 174 40.8
HanXRQChr12g0382221 Helianthus annuus HOM05D004468 ORTHO05D008180 7.3e-16 88.6 113 54.0
BraA07t28804Z Brassica rapa HOM05D004468 ORTHO05D008180 1.5e-13 80.9 213 33.3
Zm00001eb278170 Zea mays HOM05D004468 ORTHO05D008180 1.7e-12 77.4 209 33.5
Lsat_1_v5_gn_1_2200 Lactuca sativa HOM05D001755 ORTHO05D001665 5.4e-11 72.4 273 24.9
Zm00001eb277350 Zea mays HOM05D004468 ORTHO05D008180 6.0e-10 68.9 190 32.6
C07p15610 Brassica napus HOM05D004468 ORTHO05D008180 1.7e-09 67.4 136 37.5
Duzib116G0593 Durio zibethinus HOM05D001755 ORTHO05D001665 1.7e-09 67.4 265 27.2
Aqoxy6G01464 Aquilegia oxysepala HOM05D001755 ORTHO05D001665 3.0e-09 66.6 236 27.5
Sc26g0000240 Simmondsia chinensis HOM05D001755 ORTHO05D001665 6.6e-09 65.5 216 29.2
CDE08G0998 Ceratophyllum demersum HOM05D004468 ORTHO05D011136 1.5e-08 64.3 133 39.1
SGA_v2.0_scaffold94G28577 Striga asiatica HOM05D001755 ORTHO05D001665 1.9e-08 63.9 256 24.6
Actinidia10367 Actinidia chinensis HOM05D001755 ORTHO05D001665 2.5e-08 63.5 244 24.6
Manes.18G061300 Manihot esculenta HOM05D001755 ORTHO05D001665 4.3e-08 62.8 244 25.0
Thecc.08G067700 Theobroma cacao HOM05D001755 ORTHO05D001665 4.3e-08 62.8 264 25.8
Duzib093G0625 Durio zibethinus HOM05D001755 ORTHO05D001665 1.2e-07 61.2 237 25.7
THA.LOC104806804 Tarenaya hassleriana HOM05D001755 ORTHO05D001665 1.2e-07 61.2 253 25.7
BolC7t42047H Brassica oleracea HOM05D004468 ORTHO05D008180 1.6e-07 60.8 79 41.8
Hund27005 Selenicereus undatus HOM05D001755 ORTHO05D001665 2.1e-07 60.5 240 24.6
Aqoxy5G01330 Aquilegia oxysepala HOM05D001755 ORTHO05D001665 4.7e-07 59.3 237 27.0
Cpa.g.c31184 Carica papaya HOM05D001755 ORTHO05D001665 4.7e-07 59.3 258 24.8
Migut.L01931 Erythranthe guttata HOM05D001755 ORTHO05D001665 4.7e-07 59.3 223 25.1
COL.COLO4_35196 Corchorus olitorius HOM05D001755 ORTHO05D001665 8.0e-07 58.5 246 24.8
BcaC06g35479 Brassica carinata HOM05D000171 ORTHO05D008180 1.1e-06 58.2 55 49.1
Ah.05g170640 Amaranthus hybridus HOM05D001755 ORTHO05D001665 1.4e-06 57.8 238 24.4
MELO3C024839.2 Cucumis melo HOM05D001755 ORTHO05D001665 1.4e-06 57.8 245 27.3
CDE10G0928 Ceratophyllum demersum HOM05D001755 ORTHO05D001665 3.1e-06 56.6 213 27.2
SMO118G0243 Selaginella moellendorffii HOM05D004468 ORTHO05D375052 4.0e-06 56.2 125 29.6
Duzib041G0605 Durio zibethinus HOM05D001755 ORTHO05D001665 5.2e-06 55.8 247 23.9
Glyma.02G212200 Glycine max HOM05D001755 ORTHO05D001665 5.2e-06 55.8 73 39.7
Potri.002G103300 Populus trichocarpa HOM05D001755 ORTHO05D001665 5.2e-06 55.8 61 41.0
Sc01g0001030 Simmondsia chinensis HOM05D001755 ORTHO05D001665 5.2e-06 55.8 250 26.0
CsaV3_2G030090 Cucumis sativus L. HOM05D001755 ORTHO05D001665 6.8e-06 55.5 241 23.2
Sed0009224 Sechium edule HOM05D001755 ORTHO05D001665 6.8e-06 55.5 237 24.1


User provided reference genes

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