Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 9.0e-61 236.9 133 100.0
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 1.5e-55 219.5 133 91.7
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 4.3e-55 218.0 133 91.0
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 5.9e-52 207.6 133 88.7
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 8.5e-51 203.8 133 88.7
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 8.5e-51 203.8 133 88.7
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 1.9e-50 202.6 132 87.1
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 5.5e-50 201.1 133 85.7
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 7.2e-50 200.7 133 86.5
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 7.2e-50 200.7 132 87.1
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 1.6e-49 199.5 130 86.2
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 1.6e-49 199.5 131 87.8
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 2.1e-49 199.1 133 85.0
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 2.1e-49 199.1 133 86.5
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 2.1e-49 199.1 133 86.5
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 4.7e-49 198.0 133 85.7
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 6.1e-49 197.6 133 85.7
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 7.9e-49 197.2 133 85.0
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 1.0e-48 196.8 133 85.0
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 1.4e-48 196.4 133 86.5
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 1.4e-48 196.4 133 85.0
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 1.4e-48 196.4 133 85.7
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 1.4e-48 196.4 131 86.3
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 1.8e-48 196.1 133 85.0
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 3.9e-48 194.9 130 84.6
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 3.9e-48 194.9 130 85.4
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 3.9e-48 194.9 133 85.0
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 3.9e-48 194.9 130 85.4
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 5.1e-48 194.5 129 83.7
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 5.1e-48 194.5 133 84.2
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 6.7e-48 194.1 129 83.7
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 8.8e-48 193.7 133 83.5
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 1.1e-47 193.4 130 84.6
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 1.1e-47 193.4 130 84.6
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 1.1e-47 193.4 133 84.2
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 1.1e-47 193.4 133 82.7
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 1.5e-47 193.0 129 85.3
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 1.5e-47 193.0 130 84.6
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 2.0e-47 192.6 130 83.8
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 3.3e-47 191.8 133 82.7
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 4.4e-47 191.4 133 82.7
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 5.7e-47 191.0 134 84.3
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 1.3e-46 189.9 130 83.1
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 1.3e-46 189.9 132 85.6
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 1.3e-46 189.9 133 82.7
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 1.7e-46 189.5 133 82.0
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 1.7e-46 189.5 133 82.0
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 2.2e-46 189.1 132 83.3
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 3.7e-46 188.3 133 82.7
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 8.2e-46 187.2 133 80.5
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 1.1e-45 186.8 121 86.0
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.4e-45 186.4 120 89.2
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 1.4e-45 186.4 133 82.7
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 1.8e-45 186.0 120 85.8
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 1.8e-45 186.0 130 80.8
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 4.1e-45 184.9 130 80.8
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 1.5e-44 183.0 133 81.2
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 2.6e-44 182.2 123 83.7
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 4.5e-44 181.4 133 79.7
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 7.7e-44 180.6 123 82.9
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 7.7e-44 180.6 133 77.4
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 7.7e-44 180.6 133 77.4
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 7.7e-44 180.6 131 77.9
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.0e-43 180.3 154 71.4
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 1.0e-43 180.3 133 78.9
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 1.3e-43 179.9 121 83.5
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 1.7e-43 179.5 133 76.7
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 2.2e-43 179.1 130 77.7
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 3.8e-43 178.3 131 77.1
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.4e-42 176.4 133 75.9
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 1.4e-42 176.4 120 85.0
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 1.9e-42 176.0 120 85.0
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 2.5e-42 175.6 134 79.1
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 2.5e-42 175.6 121 83.5
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 4.2e-42 174.9 131 74.8
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 4.2e-42 174.9 165 66.7
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 7.2e-42 174.1 120 84.2
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 1.2e-41 173.3 133 78.9
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 1.6e-41 172.9 120 84.2
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 3.6e-41 171.8 133 78.2
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 6.1e-41 171.0 133 76.7
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 8.0e-41 170.6 133 77.4
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 1.0e-40 170.2 120 84.2
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 1.4e-40 169.9 120 82.5
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 1.8e-40 169.5 132 77.3
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 3.0e-40 168.7 118 82.2
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 6.7e-40 167.5 120 80.8
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.1e-39 166.8 132 77.3
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.1e-39 166.8 132 77.3
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 1.5e-39 166.4 133 75.9
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 2.6e-39 165.6 120 81.7
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 5.7e-39 164.5 130 73.8
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 4.8e-38 161.4 120 80.0
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 8.2e-38 160.6 130 73.1
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 1.1e-37 160.2 133 72.9
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 1.1e-37 160.2 133 72.9
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 4.1e-37 158.3 116 79.3
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.2e-36 156.8 133 73.7
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 1.2e-36 156.8 130 73.1
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 1.6e-36 156.4 133 72.9
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 1.0e-35 153.7 130 71.5
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 5.0e-35 151.4 120 76.7
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 6.5e-35 151.0 156 62.8
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 5.5e-34 147.9 116 78.4
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 1.2e-33 146.7 130 70.0
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 1.2e-33 146.7 120 75.8
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 8.0e-33 144.1 133 69.2
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.2e-31 140.2 132 67.4
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 2.6e-31 139.0 132 65.2
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 7.5e-31 137.5 133 66.9
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 1.3e-30 136.7 96 79.2
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 2.4e-29 132.5 133 63.9
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 2.4e-29 132.5 133 63.9
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 4.1e-29 131.7 143 60.8
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 1.6e-28 129.8 114 69.3
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 1.6e-28 129.8 118 67.8
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 2.7e-28 129.0 94 76.6
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 5.9e-28 127.9 105 72.4
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 1.0e-27 127.1 82 87.8
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 2.1e-25 119.4 134 59.0
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 6.1e-25 117.9 132 59.1
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 1.0e-24 117.1 82 81.7
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 1.8e-24 116.3 129 58.9
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 2.6e-23 112.5 105 65.7
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 2.6e-23 112.5 68 88.2
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 1.3e-22 110.2 66 90.9
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 1.3e-22 110.2 83 75.9
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 4.8e-22 108.2 136 55.9
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 1.2e-20 103.6 70 80.0
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 4.5e-20 101.7 68 82.4
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 2.5e-18 95.9 123 50.4
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 3.3e-18 95.5 65 83.1
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 3.6e-17 92.0 64 84.4
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 8.0e-17 90.9 123 48.8
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 2.3e-16 89.4 274 33.6
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.5e-15 86.7 55 83.6
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 2.0e-15 86.3 54 88.9
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 1.3e-14 83.6 54 83.3
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 2.2e-14 82.8 65 73.8
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 8.3e-14 80.9 87 51.7
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 1.6e-12 76.6 75 68.0
Hund21505 Selenicereus undatus HOM05D005404 ORTHO05D006623 7.3e-10 67.8 113 41.6
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.0e-08 63.9 52 75.0
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 8.9e-08 60.8 40 82.5


User provided reference genes

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