Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 5.7e-239 830.5 409 100.0
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 3.9e-232 807.7 409 96.8
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 1.5e-231 805.8 409 95.4
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 2.2e-230 802.0 409 94.9
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 4.8e-230 800.8 409 94.6
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.6e-228 795.8 409 94.1
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 2.1e-225 785.4 409 92.7
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 6.1e-225 783.9 408 92.6
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.3e-224 781.9 409 92.4
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 6.7e-224 780.4 408 92.6
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 2.0e-223 778.9 408 92.2
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 3.3e-223 778.1 409 92.2
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 2.2e-222 775.4 409 91.0
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 2.8e-222 775.0 409 91.4
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 3.7e-222 774.6 409 91.4
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 3.7e-222 774.6 409 92.2
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 6.3e-222 773.9 409 91.4
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 1.4e-221 772.7 409 91.9
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 1.8e-221 772.3 409 92.2
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.8e-221 772.3 409 91.9
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.4e-221 771.9 409 91.2
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 4.1e-221 771.2 409 91.0
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 5.3e-221 770.8 409 91.0
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 5.3e-221 770.8 409 91.9
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.6e-220 769.2 409 91.0
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 2.0e-220 768.8 407 91.2
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 2.0e-220 768.8 409 91.2
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 2.0e-220 768.8 409 91.9
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 2.7e-220 768.5 409 91.7
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 2.7e-220 768.5 425 88.5
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 3.5e-220 768.1 409 90.7
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 7.7e-220 766.9 409 91.4
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.0e-219 766.5 409 91.7
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 1.7e-219 765.8 409 91.4
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 2.9e-219 765.0 407 90.2
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 5.0e-219 764.2 409 90.5
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 5.0e-219 764.2 409 90.5
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 5.0e-219 764.2 409 89.7
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 6.5e-219 763.8 409 90.7
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 1.1e-218 763.1 409 90.2
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 1.1e-218 763.1 409 90.7
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.1e-218 763.1 409 89.7
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 1.5e-218 762.7 409 90.2
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.9e-218 762.3 409 90.0
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 2.5e-218 761.9 409 90.7
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 2.5e-218 761.9 409 90.2
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 2.5e-218 761.9 409 90.0
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 3.2e-218 761.5 409 90.5
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 3.2e-218 761.5 409 88.3
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 3.2e-218 761.5 409 89.7
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 3.2e-218 761.5 409 90.0
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 5.5e-218 760.8 421 88.6
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 5.5e-218 760.8 407 89.2
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 9.4e-218 760.0 407 88.9
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 9.4e-218 760.0 411 90.3
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 2.1e-217 758.8 409 89.7
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.1e-217 758.8 409 90.2
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 2.7e-217 758.4 409 90.0
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 3.6e-217 758.1 408 88.5
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 4.7e-217 757.7 407 89.7
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 6.1e-217 757.3 409 88.3
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 6.1e-217 757.3 452 83.4
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 1.4e-216 756.1 409 87.8
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 1.8e-216 755.7 409 89.5
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 2.3e-216 755.4 407 88.9
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 2.3e-216 755.4 405 89.6
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 2.3e-216 755.4 409 88.5
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 5.2e-216 754.2 409 89.0
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 8.8e-216 753.4 407 87.7
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 2.6e-215 751.9 407 87.7
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 5.7e-215 750.7 410 88.8
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 7.5e-215 750.4 409 87.5
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 7.5e-215 750.4 409 87.8
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 7.5e-215 750.4 407 87.5
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 9.8e-215 750.0 407 87.7
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 9.8e-215 750.0 409 87.0
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 1.7e-214 749.2 410 89.3
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.7e-214 749.2 476 79.2
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 2.2e-214 748.8 409 87.8
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.2e-214 748.8 451 82.7
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 2.2e-214 748.8 409 87.8
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 2.8e-214 748.4 409 87.8
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 2.8e-214 748.4 409 87.3
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 6.3e-214 747.3 409 87.0
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 1.1e-213 746.5 410 87.1
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 1.4e-213 746.1 410 87.1
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 2.4e-213 745.3 409 87.0
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 5.4e-213 744.2 409 86.8
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 7.0e-213 743.8 409 86.8
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 7.0e-213 743.8 409 86.8
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 9.1e-213 743.4 409 87.0
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.6e-212 742.7 409 86.3
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 2.0e-212 742.3 409 85.6
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 2.7e-212 741.9 409 86.1
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 5.9e-212 740.7 399 89.7
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 1.3e-211 739.6 410 86.6
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 1.3e-211 739.6 410 86.6
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 1.3e-211 739.6 409 87.5
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 2.9e-211 738.4 409 86.3
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 3.8e-211 738.0 409 86.1
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 3.8e-211 738.0 410 86.6
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 6.6e-211 737.3 410 86.6
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 4.2e-210 734.6 436 83.0
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.2e-209 733.0 408 86.3
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 3.6e-209 731.5 408 85.8
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 6.8e-208 727.2 409 84.8
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 8.9e-208 726.9 409 85.1
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 4.4e-207 724.5 409 85.6
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 1.7e-206 722.6 385 90.1
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.1e-205 719.9 409 85.3
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 1.4e-205 719.5 380 92.1
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 5.4e-205 717.6 386 90.9
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 7.8e-204 713.8 520 71.2
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 1.1e-202 709.9 388 88.9
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 1.6e-201 706.1 452 75.9
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 9.8e-199 696.8 410 82.9
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 4.6e-196 688.0 418 81.3
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 4.6e-196 688.0 413 80.1
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 1.0e-195 686.8 358 92.5
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 2.8e-193 678.7 356 90.4
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 5.8e-191 671.0 403 80.4
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 1.3e-190 669.8 409 77.5
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 8.3e-190 667.2 402 79.9
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 9.2e-189 663.7 358 88.3
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 5.1e-187 657.9 409 80.2
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 3.1e-176 622.1 405 72.6
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 2.6e-175 619.0 404 72.8
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 3.2e-173 612.1 406 73.2
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 7.1e-173 610.9 380 73.9
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 6.0e-172 607.8 320 90.9
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 9.0e-168 594.0 387 73.6
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 2.8e-161 572.4 390 75.4
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 4.9e-158 561.6 409 69.9
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 5.8e-151 538.1 318 81.8
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.9e-146 523.1 310 83.9
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 1.3e-142 510.4 400 62.5
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 3.3e-130 469.2 245 91.8
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 4.8e-129 465.3 238 94.5
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 1.5e-127 460.3 258 85.3
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 1.7e-126 456.8 368 62.2
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 8.2e-121 438.0 385 56.9
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 3.8e-118 429.1 228 90.4
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 7.2e-109 398.3 239 80.3
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 1.3e-102 377.5 197 91.9
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.1e-80 304.7 404 44.6
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 2.3e-75 287.0 390 44.1
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 1.1e-72 278.1 183 76.0
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 6.2e-68 262.3 180 69.4
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 6.2e-60 235.7 141 77.3
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 1.1e-59 235.0 140 77.9
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 4.2e-56 223.0 124 84.7
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.2e-49 200.7 130 77.7
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 6.1e-23 112.8 128 50.8
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 6.3e-20 102.8 58 77.6
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 2.4e-11 74.3 332 23.5
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 3.8e-09 67.0 336 22.0


User provided reference genes

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