Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 9.3e-147 523.9 334 100.0
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 4.7e-114 415.2 325 83.7
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 2.0e-96 356.7 315 80.0
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.0e-96 356.7 315 80.0
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 1.3e-95 354.0 321 78.5
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.8e-95 352.8 332 76.8
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 1.1e-94 350.9 300 66.3
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 3.5e-93 345.9 312 65.4
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.0e-92 344.4 315 70.8
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 5.0e-92 342.0 305 64.3
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 1.5e-91 340.5 306 64.7
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 2.5e-91 339.7 230 73.0
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 2.5e-91 339.7 230 73.0
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 7.2e-91 338.2 328 62.5
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 1.2e-90 337.4 306 63.4
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 3.6e-90 335.9 306 71.9
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 1.0e-89 334.3 310 58.7
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.4e-89 334.0 301 61.1
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 1.8e-89 333.6 329 62.0
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 1.8e-89 333.6 318 61.6
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 6.8e-89 331.6 305 62.0
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 1.2e-88 330.9 319 64.3
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 3.4e-88 329.3 296 71.3
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 3.4e-88 329.3 326 56.7
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 4.4e-88 328.9 307 68.1
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 7.5e-88 328.2 218 75.2
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 3.7e-87 325.9 283 65.7
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 2.4e-86 323.2 339 59.0
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 3.1e-86 322.8 230 70.9
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 5.4e-86 322.0 294 59.2
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 7.0e-86 321.6 339 58.7
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 9.2e-86 321.2 302 64.9
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 1.2e-85 320.9 339 58.4
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 2.7e-85 319.7 301 60.5
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 7.7e-85 318.2 302 62.6
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.0e-84 317.8 316 60.8
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 2.3e-84 316.6 243 67.5
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 5.0e-84 315.5 301 58.5
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 8.6e-84 314.7 328 59.1
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 1.5e-83 313.9 324 66.7
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 4.3e-83 312.4 304 60.2
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 4.3e-83 312.4 302 58.9
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 5.6e-83 312.0 303 65.3
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 7.3e-83 311.6 284 77.1
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 9.5e-83 311.2 330 54.5
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 1.6e-82 310.5 298 62.1
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 2.1e-82 310.1 217 71.4
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 2.1e-82 310.1 310 58.1
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 4.7e-82 308.9 323 60.7
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 6.1e-82 308.5 320 69.7
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 6.1e-82 308.5 227 67.0
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 6.1e-82 308.5 314 68.5
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 8.0e-82 308.1 287 62.4
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 1.8e-81 307.0 298 61.1
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 1.8e-81 307.0 227 67.4
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 2.3e-81 306.6 229 65.9
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 2.3e-81 306.6 299 57.9
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 4.0e-81 305.8 323 56.3
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 5.2e-81 305.4 196 73.5
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 6.8e-81 305.1 200 70.5
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 6.8e-81 305.1 313 55.3
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 1.2e-80 304.3 229 65.9
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 1.5e-80 303.9 211 69.7
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 2.0e-80 303.5 284 56.7
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 3.4e-80 302.8 314 52.2
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 4.4e-80 302.4 224 67.4
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 4.4e-80 302.4 227 65.2
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 1.3e-79 300.8 301 57.8
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 1.7e-79 300.4 227 65.6
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 2.9e-79 299.7 254 62.6
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 3.7e-79 299.3 300 64.3
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 3.7e-79 299.3 228 68.4
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 4.9e-79 298.9 289 56.7
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 1.4e-78 297.4 225 66.2
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 3.2e-78 296.2 289 66.4
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 3.2e-78 296.2 296 57.8
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 4.1e-78 295.8 300 55.7
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 7.0e-78 295.0 301 56.8
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 8.6e-76 288.1 360 51.9
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 4.3e-75 285.8 221 64.7
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 5.6e-75 285.4 201 69.7
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 2.1e-74 283.5 324 68.2
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 2.1e-74 283.5 221 65.2
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 2.1e-74 283.5 231 62.8
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 3.6e-74 282.7 311 52.1
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 3.6e-74 282.7 304 57.2
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 4.7e-74 282.3 338 59.2
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 4.7e-74 282.3 330 57.9
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 6.2e-74 282.0 301 54.8
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 6.2e-74 282.0 231 62.3
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.8e-73 280.4 228 63.6
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 2.3e-73 280.0 301 58.1
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 5.2e-73 278.9 330 59.7
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.5e-72 277.3 229 61.6
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 2.6e-72 276.6 313 60.1
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 5.8e-72 275.4 313 63.6
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 7.5e-72 275.0 333 65.5
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 7.5e-72 275.0 313 63.6
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 1.3e-71 274.2 313 63.3
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 3.7e-71 272.7 315 62.5
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 3.7e-71 272.7 315 62.5
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 1.5e-67 260.8 247 56.3
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 4.3e-67 259.2 189 64.6
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 3.6e-66 256.1 238 60.9
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 1.1e-65 254.6 252 59.9
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 1.3e-63 247.7 153 75.2
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 1.2e-61 241.1 221 57.0
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 5.1e-60 235.7 286 51.0
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 1.6e-58 230.7 221 56.1
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 8.1e-58 228.4 137 83.2
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 2.3e-57 226.9 233 50.6
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 5.2e-57 225.7 215 51.6
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 5.4e-54 215.7 221 49.3
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 3.9e-52 209.5 191 51.3
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 1.4e-46 191.0 188 50.5
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 8.7e-44 181.8 136 68.4
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.5e-43 180.3 216 45.8
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 6.2e-42 175.6 124 64.5
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.3e-36 157.9 211 40.3
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 3.3e-35 153.3 177 42.4
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 1.6e-34 151.0 97 74.2
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 2.1e-34 150.6 95 75.8
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 4.8e-34 149.4 355 38.0
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 5.8e-32 142.5 155 46.5
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 6.5e-23 112.5 225 29.8
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 1.4e-22 111.3 196 32.7
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 3.2e-22 110.2 70 74.3
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 7.1e-22 109.0 165 41.2
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.2e-16 91.7 297 27.6
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.9e-14 84.3 183 29.5
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 1.6e-13 81.3 148 52.7
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.1e-12 76.3 191 27.7
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 9.7e-11 72.0 65 61.5
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 4.8e-10 69.7 199 28.6
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 1.4e-09 68.2 149 32.9
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 7.7e-08 62.4 68 52.9
MCO12G371 Micromonas commoda HOM05D005493 ORTHO05D049008 1.7e-07 61.2 243 23.9
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 5.0e-07 59.7 96 28.1


User provided reference genes

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