Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 0.0e+00 1765.7 937 100.0
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 0.0e+00 1392.1 949 79.8
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 0.0e+00 1364.4 948 79.5
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 0.0e+00 1291.9 952 75.2
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 0.0e+00 1205.7 951 72.3
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 0.0e+00 1203.3 951 72.2
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 0.0e+00 1192.6 943 72.1
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 0.0e+00 1181.0 949 71.7
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 0.0e+00 1174.1 943 71.6
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 0.0e+00 1083.9 950 68.2
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 0.0e+00 1082.0 948 65.7
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 1.9e-306 1055.8 1016 61.9
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 2.0e-300 1035.8 954 65.2
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 1.0e-299 1033.5 954 65.0
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 6.1e-297 1024.2 951 61.7
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 2.2e-294 1015.8 965 63.6
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 9.5e-290 1000.3 954 60.9
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 1.2e-289 1000.0 952 64.2
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 4.7e-289 998.0 947 62.6
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 2.0e-287 992.6 960 64.3
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 4.9e-286 988.0 954 61.0
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 5.6e-282 974.5 940 62.7
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 3.6e-281 971.8 911 61.6
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.5e-279 966.5 954 62.4
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.6e-279 965.7 954 62.4
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.4e-279 964.9 954 62.3
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.9e-278 961.4 957 61.0
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 4.9e-278 961.4 959 61.0
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 9.2e-277 957.2 951 59.1
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 4.6e-276 954.9 951 59.2
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 4.6e-276 954.9 950 58.8
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 5.1e-275 951.4 957 60.4
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 3.3e-274 948.7 1002 56.7
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 3.3e-274 948.7 953 57.1
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 2.4e-272 942.6 952 59.8
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 2.6e-271 939.1 955 60.3
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 1.7e-270 936.4 952 60.1
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 4.2e-269 931.8 946 60.6
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 6.6e-267 924.5 954 58.7
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 4.4e-263 911.8 954 58.0
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 1.0e-259 900.6 952 58.7
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 1.2e-252 877.1 950 54.7
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 1.8e-251 873.2 934 58.0
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 2.3e-251 872.8 957 55.3
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 6.2e-249 864.8 952 54.5
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 4.5e-247 858.6 968 55.3
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 1.1e-245 854.0 948 55.3
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.9e-242 843.2 884 57.7
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.3e-241 840.5 884 57.1
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.8e-241 838.6 884 57.1
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 2.9e-238 829.3 652 69.8
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 5.5e-237 825.1 1021 52.8
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 9.3e-237 824.3 938 54.8
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 1.2e-236 823.9 979 54.1
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 1.6e-236 823.5 948 53.2
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 6.1e-236 821.6 928 53.7
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 7.9e-236 821.2 928 56.7
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 5.7e-234 815.1 961 54.0
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 7.4e-234 814.7 938 53.6
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 1.4e-232 810.4 948 53.3
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 2.4e-232 809.7 975 52.2
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 5.3e-232 808.5 983 53.6
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 9.4e-229 797.7 954 52.7
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 2.7e-228 796.2 923 53.3
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 4.6e-228 795.4 898 56.2
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 3.8e-222 775.8 947 53.2
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.7e-220 769.6 884 53.1
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 8.8e-219 764.6 945 51.1
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 8.8e-219 764.6 903 51.9
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 3.5e-215 752.7 926 52.6
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 3.5e-215 752.7 910 53.4
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.7e-215 751.5 931 54.6
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 2.7e-212 743.0 956 50.0
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 8.8e-211 738.0 790 57.5
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 2.0e-210 736.9 969 51.6
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 3.3e-210 736.1 940 52.2
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 1.8e-208 730.3 981 49.7
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 2.9e-206 723.0 921 50.5
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 6.5e-206 721.8 916 50.3
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 1.5e-205 720.7 883 49.4
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.1e-204 716.8 921 50.7
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 6.1e-204 715.3 916 51.0
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 1.8e-203 713.8 920 48.9
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 2.6e-202 709.9 910 49.8
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 9.8e-202 708.0 892 50.9
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 1.3e-201 707.6 921 50.2
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 6.3e-201 705.3 869 53.0
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 2.0e-199 700.3 935 51.3
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.5e-199 699.5 850 50.7
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 5.9e-199 698.7 609 66.2
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.3e-198 697.6 657 61.0
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 1.0e-195 688.0 932 51.9
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 1.0e-195 688.0 957 47.0
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 1.5e-194 684.1 990 47.5
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 5.9e-191 672.2 906 47.7
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 6.6e-190 668.7 881 51.4
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 8.6e-190 668.3 959 47.1
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 1.6e-188 664.1 930 49.1
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 8.0e-188 661.8 957 47.9
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.2e-185 653.7 935 47.1
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 9.2e-184 648.3 935 46.2
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 2.8e-180 636.7 875 50.9
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 1.0e-179 634.8 867 50.5
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 1.0e-179 634.8 956 47.0
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.3e-179 633.6 930 46.7
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 3.4e-178 629.8 970 45.3
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 8.3e-177 625.2 912 45.7
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 3.2e-176 623.2 446 81.2
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 4.1e-176 622.9 927 45.8
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.8e-171 607.4 964 45.3
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 8.9e-171 605.1 956 44.8
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 2.6e-170 603.6 866 47.7
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 9.2e-168 595.1 505 67.1
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 3.0e-166 590.1 974 43.9
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 3.6e-164 583.2 910 45.5
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 1.2e-162 578.2 927 43.6
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 3.7e-161 573.2 962 45.3
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 3.7e-161 573.2 968 44.2
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 5.4e-160 569.3 968 44.1
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 9.2e-160 568.5 946 45.5
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 1.6e-159 567.8 959 45.2
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 1.6e-159 567.8 959 45.2
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 2.1e-159 567.4 953 45.5
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 6.0e-159 565.8 968 44.3
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 1.3e-158 564.7 951 44.6
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.1e-157 561.6 669 54.9
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 1.1e-157 561.6 951 44.6
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 1.2e-156 558.1 926 44.7
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.8e-155 552.4 705 50.8
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 2.9e-153 547.0 967 44.1
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 7.1e-152 542.3 885 44.1
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 2.3e-150 537.3 908 43.2
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 1.1e-149 535.0 881 44.2
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 3.1e-147 526.9 701 48.9
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 7.6e-146 522.3 637 55.3
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 5.4e-144 516.2 921 41.0
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 8.7e-142 508.8 854 44.3
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 1.1e-141 508.4 831 41.6
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 4.6e-135 486.5 468 60.3
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 8.7e-126 455.7 989 38.2
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 2.1e-124 451.1 840 38.8
Gohir.A11G066766 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.4e-123 448.4 440 60.7
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 3.0e-118 430.6 865 40.3
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 3.3e-117 427.2 910 37.0
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 2.4e-115 421.0 873 40.3
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 8.8e-110 402.5 645 45.1
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 5.3e-107 393.3 570 46.1
Atru.chr6.2365 Acer truncatum HOM05D003655 ORTHO05D004065 1.1e-99 369.0 287 69.7
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 6.1e-95 353.2 1040 36.3
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.7e-94 349.7 337 59.3
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 3.3e-93 347.4 949 34.9
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 8.0e-87 326.2 384 52.3
Nn3g16761 Nelumbo nucifera HOM05D003655 ORTHO05D004065 1.2e-77 295.8 957 30.6
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.7e-76 290.8 774 34.4
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.5e-74 284.3 879 31.2
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 6.6e-73 280.0 833 32.2
Atru.chr6.2272 Acer truncatum HOM05D003655 ORTHO05D004065 3.4e-69 267.7 224 68.3
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 6.6e-65 253.4 386 46.4
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 4.7e-63 247.3 747 33.5
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 6.2e-63 246.9 275 54.9
SHI22307 Sapria himalayana HOM05D003655 ORTHO05D004065 1.6e-58 232.3 262 55.0
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 2.8e-55 221.5 358 45.0
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 5.6e-48 197.2 273 48.7
Haze_14709 Corylus avellana HOM05D003655 ORTHO05D004065 6.8e-46 190.3 126 73.8
CiPaw.04G028000 Carya illinoinensis HOM05D003655 ORTHO05D004065 1.7e-44 185.7 199 58.8
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.2e-43 181.4 551 33.2
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 3.1e-38 164.9 525 28.8
Cfa007935 Carpinus fangiana HOM05D003655 ORTHO05D004065 1.1e-35 156.4 105 74.3
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 5.4e-35 154.1 258 50.8
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 2.2e-28 132.1 167 49.7
Sopen01g024710 Solanum pennellii HOM05D003655 ORTHO05D004065 5.1e-25 120.9 107 57.9
Atru.chr6.2364 Acer truncatum HOM05D003655 ORTHO05D004065 1.5e-24 119.4 93 77.4
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 6.9e-22 110.5 119 60.5
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 1.3e-17 96.3 124 42.7
Actinidia25101 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.8e-17 95.9 99 47.5
Ca_31040_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 1.3e-15 89.7 154 39.0
Sopen01g024690 Solanum pennellii HOM05D000006 ORTHO05D000695 2.1e-15 89.0 129 48.1
Peaxi162Scf00417g00004 Petunia axillaris HOM05D003655 ORTHO05D004065 1.4e-14 86.3 145 40.7
Solyc01g058690.1 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.8e-14 85.9 128 43.8
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 4.9e-12 77.8 48 68.8
CBR_g57010 Chara braunii HOM05D003655 ORTHO05D004065 3.9e-09 68.2 93 40.9
Hund13661 Selenicereus undatus HOM05D003655 ORTHO05D004065 4.1e-06 58.2 71 56.3
AUR62012685 Chenopodium quinoa HOM05D000561 ORTHO05D000514 6.9e-06 57.4 106 35.8
AUR62021972 Chenopodium quinoa HOM05D000561 ORTHO05D000514 6.9e-06 57.4 106 35.8


User provided reference genes

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