Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G289600 Prunus persica HOM05D003655 ORTHO05D004065 4.2e-196 688.0 376 100.0
Prupe.3G290100 Prunus persica HOM05D003655 ORTHO05D004065 3.3e-177 625.2 446 81.2
MD09G1028400 Malus domestica HOM05D003655 ORTHO05D004065 1.3e-136 490.3 442 64.3
MD17G1029900 Malus domestica HOM05D003655 ORTHO05D004065 4.9e-128 461.8 440 64.1
RcHm_v2.0_Chr2g0173051 Rosa chinensis HOM05D003655 ORTHO05D004065 4.7e-115 418.7 445 59.8
Haze_14727 Corylus avellana HOM05D003655 ORTHO05D004065 6.4e-104 381.7 361 66.8
FAN05G1583 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.1e-103 380.9 441 57.8
FAN05G2840 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.7e-101 373.6 441 56.9
FvH4_6g51350 Fragaria vesca HOM05D003655 ORTHO05D004065 1.5e-100 370.5 443 56.7
FAN09G1146 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.5e-100 370.5 439 57.2
FAN14G5704 Fragaria x ananassa HOM05D003655 ORTHO05D004065 1.9e-100 370.2 443 56.7
FAN02G0206 Fragaria x ananassa HOM05D003655 ORTHO05D004065 2.8e-99 366.3 441 56.5
CiPaw.03G042300 Carya illinoinensis HOM05D003655 ORTHO05D004065 3.8e-96 355.9 363 58.1
QL02p075116 Quercus lobata HOM05D003655 ORTHO05D004065 3.2e-95 352.8 462 51.3
Dinv35101 Davidia involucrata HOM05D003655 ORTHO05D004065 5.1e-93 345.5 426 51.9
Thecc.04G015700 Theobroma cacao HOM05D003655 ORTHO05D004065 5.3e-90 335.5 455 53.0
CSS0048500 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 1.3e-88 330.9 454 48.0
Potri.001G351532 Populus trichocarpa HOM05D003655 ORTHO05D004065 4.9e-88 328.9 447 50.6
CSS0034547 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 4.2e-87 325.9 457 45.7
CSS0046674 Camellia sinensis var. sinensis HOM05D003655 ORTHO05D004065 4.2e-87 325.9 457 46.0
Duzib264G1220 Durio zibethinus HOM05D003655 ORTHO05D004065 1.2e-86 324.3 353 62.0
Ciclev10014173m.g Citrus clementina HOM05D003655 ORTHO05D004065 1.6e-86 323.9 462 51.7
Manes.15G166100 Manihot esculenta HOM05D003655 ORTHO05D004065 6.0e-86 322.0 362 53.3
TAR629G1826 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.3e-85 320.9 375 53.1
Dinv33450 Davidia involucrata HOM05D003655 ORTHO05D004065 2.3e-85 320.1 342 55.8
Potri.017G072100 Populus trichocarpa HOM05D003655 ORTHO05D004065 2.5e-84 316.6 358 52.8
Gohir.A05G356200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 4.3e-84 315.8 455 51.6
Duzib187G1135 Durio zibethinus HOM05D003655 ORTHO05D004065 7.4e-84 315.1 458 51.7
Manes.17G115600 Manihot esculenta HOM05D003655 ORTHO05D004065 2.8e-83 313.2 449 46.1
Lj4C88T15 Lonicera japonica HOM05D003655 ORTHO05D004065 6.3e-83 312.0 448 49.3
Rhsim08G0051400 Rhododendron simsii HOM05D003655 ORTHO05D004065 8.2e-83 311.6 441 49.9
Gorai.012G063700 Gossypium raimondii HOM05D003655 ORTHO05D004065 1.1e-82 311.2 458 51.1
Gohir.D04G057000 Gossypium hirsutum HOM05D003655 ORTHO05D004065 3.1e-82 309.7 455 51.2
COL.COLO4_29094 Corchorus olitorius HOM05D003655 ORTHO05D004065 4.1e-82 309.3 450 51.3
Gorai.006G032800 Gossypium raimondii HOM05D003655 ORTHO05D004065 5.3e-82 308.9 360 60.8
TWI56G0063 Tripterygium wilfordii HOM05D003655 ORTHO05D004065 1.5e-81 307.4 356 52.0
CANSAT64G1680 Cannabis sativa HOM05D003655 ORTHO05D004065 2.0e-81 307.0 432 53.2
Glyma.19G004000 Glycine max HOM05D003655 ORTHO05D004065 4.5e-81 305.8 360 56.9
Gohir.D09G028200 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.6e-81 305.1 451 51.7
Gohir.A09G028600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.0e-80 304.7 447 51.9
arahy.Tifrunner.gnm1.ann1.MY3LMM Arachis hypogaea HOM05D003655 ORTHO05D004065 5.0e-80 302.4 456 49.8
VMungo0464G0503 Vigna mungo HOM05D003655 ORTHO05D004065 1.4e-79 300.8 447 49.2
Glyma.05G004100 Glycine max HOM05D003655 ORTHO05D004065 2.5e-79 300.1 360 56.4
vmacro18276 Vaccinium macrocarpon HOM05D003655 ORTHO05D004065 2.5e-79 300.1 441 49.9
Gorai.001G264400 Gossypium raimondii HOM05D003655 ORTHO05D004065 2.7e-78 296.6 440 50.9
Medtr6g004970 Medicago truncatula HOM05D003655 ORTHO05D004065 6.1e-78 295.4 436 45.4
Sabra17G0060300 Salix brachista HOM05D003655 ORTHO05D004065 6.1e-78 295.4 348 51.4
Gohir.D07G229300 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.9e-78 295.0 440 50.9
Phvul.004G007600 Phaseolus vulgaris HOM05D003655 ORTHO05D004065 1.3e-77 294.3 447 48.8
Sabra16G0231200 Salix brachista HOM05D003655 ORTHO05D004065 8.7e-77 291.6 500 39.6
Gohir.A07G222600 Gossypium hirsutum HOM05D003655 ORTHO05D004065 9.7e-76 288.1 440 50.5
Lj2g0025004 Lotus japonicus HOM05D003655 ORTHO05D004065 8.2e-75 285.0 362 48.9
Cc07_g01820 Coffea canephora HOM05D003655 ORTHO05D004065 1.1e-74 284.6 360 49.4
Atru.chr6.2366 Acer truncatum HOM05D003655 ORTHO05D004065 1.8e-74 283.9 277 58.5
TAR622G0533 Trochodendron aralioides HOM05D003655 ORTHO05D004065 1.2e-73 281.2 391 48.8
Lj4A88G37 Lonicera japonica HOM05D003655 ORTHO05D004065 2.9e-72 276.6 422 46.4
TPR.G14089 Trifolium pratense HOM05D003655 ORTHO05D004065 8.5e-72 275.0 405 50.6
Psat1g054960 Pisum sativum HOM05D003655 ORTHO05D004065 5.5e-71 272.3 448 42.6
Actinidia36106 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.2e-70 271.2 442 43.2
MBI10_g00730_MAGBIO Magnolia biondii HOM05D003655 ORTHO05D004065 2.7e-70 270.0 467 43.3
PGR142G1836 Punica granatum HOM05D003655 ORTHO05D004065 5.1e-69 265.8 356 49.4
Gohir.D11G070750 Gossypium hirsutum HOM05D003655 ORTHO05D004065 1.7e-67 260.8 358 53.4
Gorai.007G075900 Gossypium raimondii HOM05D003655 ORTHO05D004065 8.2e-67 258.5 358 53.6
Lalb_Chr06g0175811 Lupinus albus HOM05D003655 ORTHO05D004065 1.1e-66 258.1 450 41.1
Sc03g0007560 Simmondsia chinensis HOM05D003655 ORTHO05D004065 1.8e-66 257.3 359 46.8
AUR62009456 Chenopodium quinoa HOM05D003655 ORTHO05D004065 2.0e-65 253.8 433 45.7
Nn4g22660 Nelumbo nucifera HOM05D003655 ORTHO05D004065 2.6e-65 253.4 369 47.2
AUR62023138 Chenopodium quinoa HOM05D003655 ORTHO05D004065 5.9e-65 252.3 433 44.8
Actinidia35766 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.7e-64 250.8 368 51.6
ClCG10G013970 Citrullus lanatus HOM05D003655 ORTHO05D004065 5.0e-64 249.2 357 50.4
Hund16251 Selenicereus undatus HOM05D003655 ORTHO05D004065 5.0e-64 249.2 438 45.0
Sed0000390 Sechium edule HOM05D003655 ORTHO05D004065 1.9e-63 247.3 451 40.4
MELO3C009984.2 Cucumis melo HOM05D003655 ORTHO05D004065 2.5e-63 246.9 462 39.6
CsaV3_3G042720 Cucumis sativus L. HOM05D003655 ORTHO05D004065 1.0e-61 241.5 450 38.9
Ca_04156_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 2.3e-61 240.4 261 54.8
Sed0015855 Sechium edule HOM05D003655 ORTHO05D004065 2.3e-61 240.4 360 45.6
Ah.10g038310 Amaranthus hybridus HOM05D003655 ORTHO05D004065 2.6e-60 236.9 440 40.2
Cpa.g.sc108.55 Carica papaya HOM05D003655 ORTHO05D004065 7.4e-60 235.3 299 49.2
EL10Ac2g04412 Beta vulgaris HOM05D003655 ORTHO05D004065 1.3e-59 234.6 394 41.9
Peaxi162Scf00700g00429 Petunia axillaris HOM05D003655 ORTHO05D004065 2.2e-59 233.8 361 48.5
PGSC0003DMG400012599 Solanum tuberosum HOM05D003655 ORTHO05D004065 2.2e-59 233.8 350 47.1
Sopen02g031240 Solanum pennellii HOM05D003655 ORTHO05D004065 3.7e-59 233.0 378 44.7
Peaxi162Scf00129g01426 Petunia axillaris HOM05D003655 ORTHO05D004065 1.4e-58 231.1 364 50.0
MSTRG.24033 Avicennia marina HOM05D003655 ORTHO05D004065 2.4e-58 230.3 361 44.9
THA.LOC104823948 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 5.3e-58 229.2 319 53.6
Eucgr.I01752 Eucalyptus grandis HOM05D003655 ORTHO05D004065 7.0e-58 228.8 382 46.3
MSTRG.3149 Avicennia marina HOM05D003655 ORTHO05D004065 5.9e-57 225.7 300 48.7
Migut.H00084 Erythranthe guttata HOM05D003655 ORTHO05D004065 5.9e-57 225.7 329 45.3
PSO832G3537 Papaver somniferum HOM05D003655 ORTHO05D004065 5.9e-57 225.7 347 45.0
Sopen12g014870 Solanum pennellii HOM05D003655 ORTHO05D004065 2.2e-56 223.8 357 43.1
DCAR_011248 Daucus carota HOM05D003655 ORTHO05D004065 8.5e-56 221.9 352 44.3
PGSC0003DMG400004231 Solanum tuberosum HOM05D003655 ORTHO05D004065 8.5e-56 221.9 355 43.7
PSO063G4513 Papaver somniferum HOM05D003655 ORTHO05D004065 1.5e-55 221.1 347 44.7
Solyc12g035250.3 Solanum lycopersicum HOM05D003655 ORTHO05D004065 2.5e-55 220.3 357 42.9
THA.LOC104805377 Tarenaya hassleriana HOM05D003655 ORTHO05D004065 2.5e-55 220.3 428 44.9
Solyc02g086510.4 Solanum lycopersicum HOM05D003655 ORTHO05D004065 1.2e-54 218.0 378 43.4
Oeu063478.1 Olea europaea HOM05D003655 ORTHO05D004065 2.1e-54 217.2 428 37.6
Nitab4.5_0000419g0080 Nicotiana tabacum HOM05D003655 ORTHO05D004065 2.7e-54 216.9 360 43.1
Aa31LG2G4980 Aethionema arabicum HOM05D003655 ORTHO05D004065 1.0e-53 214.9 351 47.0
Aqoxy3G01151 Aquilegia oxysepala HOM05D003655 ORTHO05D004065 1.0e-53 214.9 275 50.5
SGA_v2.0_scaffold481G52311 Striga asiatica HOM05D003655 ORTHO05D004065 1.0e-53 214.9 347 42.9
SalBow6G0256 Salvia bowleyana HOM05D003655 ORTHO05D004065 8.8e-53 211.8 349 43.0
Nitab4.5_0002682g0090 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.4e-52 209.5 286 55.6
Nitab4.5_0002385g0010 Nicotiana tabacum HOM05D003655 ORTHO05D004065 7.5e-52 208.8 375 42.1
Carub.0005s0625 Capsella rubella HOM05D003655 ORTHO05D004065 9.7e-52 208.4 357 42.3
HanXRQChr09g0255101 Helianthus annuus HOM05D003655 ORTHO05D004065 1.7e-51 207.6 350 48.3
HanXRQChr14g0450511 Helianthus annuus HOM05D003655 ORTHO05D004065 2.2e-51 207.2 412 39.3
Ah.16g100890 Amaranthus hybridus HOM05D003655 ORTHO05D004065 3.7e-51 206.5 385 41.8
Actinidia39401 Actinidia chinensis HOM05D003655 ORTHO05D004065 6.3e-51 205.7 378 40.7
SGA_v2.0_scaffold135G34898 Striga asiatica HOM05D003655 ORTHO05D004065 8.2e-51 205.3 353 41.4
BcaB07g30148 Brassica carinata HOM05D003655 ORTHO05D004065 1.8e-50 204.1 395 42.8
ECA238G4588 Erigeron canadensis HOM05D003655 ORTHO05D004065 4.1e-50 203.0 397 44.6
AL5G17140 Arabidopsis lyrata HOM05D003655 ORTHO05D004065 9.1e-50 201.8 398 43.2
HanXRQChr07g0198951 Helianthus annuus HOM05D003655 ORTHO05D004065 1.6e-49 201.1 333 42.3
AT3G27700 Arabidopsis thaliana HOM05D003655 ORTHO05D004065 3.5e-49 199.9 399 42.6
Thhalv10003632m.g Eutrema salsugineum HOM05D003655 ORTHO05D004065 3.5e-49 199.9 386 42.7
CARHR149170 Cardamine hirsuta HOM05D003655 ORTHO05D004065 4.5e-49 199.5 400 38.8
Lsat_1_v5_gn_2_91520 Lactuca sativa HOM05D003655 ORTHO05D004065 1.0e-48 198.4 358 41.9
BcaC03g17479 Brassica carinata HOM05D003655 ORTHO05D004065 1.3e-48 198.0 399 41.9
Sp2g16820 Schrenkiella parvula HOM05D003655 ORTHO05D004065 2.2e-48 197.2 397 38.0
A02p35600 Brassica napus HOM05D003655 ORTHO05D004065 2.9e-48 196.8 426 40.4
BraA02t08562Z Brassica rapa HOM05D003655 ORTHO05D004065 2.9e-48 196.8 426 40.4
SHI22312 Sapria himalayana HOM05D003655 ORTHO05D004065 1.1e-47 194.9 253 49.8
C02p54430 Brassica napus HOM05D003655 ORTHO05D004065 1.5e-47 194.5 399 41.6
BolC2t11504H Brassica oleracea HOM05D003655 ORTHO05D004065 1.5e-47 194.5 399 41.6
A06p40940 Brassica napus HOM05D003655 ORTHO05D004065 4.2e-47 193.0 415 41.7
BraA06t27015Z Brassica rapa HOM05D003655 ORTHO05D004065 5.5e-47 192.6 415 41.7
PGR083G1229 Punica granatum HOM05D003655 ORTHO05D004065 1.6e-46 191.0 345 47.8
unitig_0.g1601 Utricularia gibba HOM05D003655 ORTHO05D004065 2.7e-46 190.3 306 44.1
C07p36880 Brassica napus HOM05D003655 ORTHO05D004065 6.1e-46 189.1 427 39.3
BolC7t44200H Brassica oleracea HOM05D003655 ORTHO05D004065 6.1e-46 189.1 427 39.3
unitig_748.g6986 Utricularia gibba HOM05D003655 ORTHO05D004065 8.0e-46 188.7 207 54.6
Hma1.2p1_1291F.1_g273550 Hydrangea macrophylla HOM05D003655 ORTHO05D004065 6.8e-45 185.7 408 44.6
Lsat_1_v5_gn_4_183501 Lactuca sativa HOM05D003655 ORTHO05D004065 4.4e-44 183.0 382 44.2
Aa31LG2G4970 Aethionema arabicum HOM05D003655 ORTHO05D004065 9.8e-44 181.8 304 48.4
Nitab4.5_0006802g0070 Nicotiana tabacum HOM05D003655 ORTHO05D004065 4.8e-43 179.5 157 63.1
HPP92_000306 Vanilla planifolia HOM05D003655 ORTHO05D004065 6.3e-43 179.1 259 46.7
ATR0568G013 Amborella trichopoda HOM05D003655 ORTHO05D004065 8.3e-43 178.7 281 43.4
Os04g0394300 Oryza sativa ssp. japonica HOM05D003655 ORTHO05D004065 1.2e-41 174.9 350 38.6
Zm00001eb085110 Zea mays HOM05D003655 ORTHO05D004065 2.2e-40 170.6 243 44.9
CDE06G2242 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 8.5e-40 168.7 206 47.1
CDE04G0669 Ceratophyllum demersum HOM05D003655 ORTHO05D004065 1.6e-38 164.5 207 48.8
Actinidia06004 Actinidia chinensis HOM05D003655 ORTHO05D004065 1.0e-37 161.8 391 34.5
BcaC06g30963 Brassica carinata HOM05D003655 ORTHO05D004065 1.8e-37 161.0 198 46.0
Medtr2g449870 Medicago truncatula HOM05D003655 ORTHO05D004065 2.8e-30 137.1 219 44.7
Mapoly0078s0024 Marchantia polymorpha HOM05D003655 ORTHO05D004065 6.8e-29 132.5 286 42.7
Medtr2g449950 Medicago truncatula HOM05D003655 ORTHO05D004065 8.9e-29 132.1 167 49.7
SEGI_17646 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 2.6e-28 130.6 172 45.3
Gohir.A11G066633 Gossypium hirsutum HOM05D003655 ORTHO05D004065 7.0e-26 122.5 217 51.2
Pp3c1_17760 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.5e-25 120.2 340 36.2
Pp3c1_20440 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.5e-25 120.2 340 36.2
Pp3c2_21410 Physcomitrium patens HOM05D003655 ORTHO05D004065 5.9e-25 119.4 285 34.0
SEGI_07755 Sequoiadendron giganteum HOM05D003655 ORTHO05D004065 5.9e-25 119.4 194 42.3
Pp3c2_22950 Physcomitrium patens HOM05D003655 ORTHO05D004065 3.0e-24 117.1 281 34.9
GSVIVG01032423001 Vitis vinifera HOM05D003655 ORTHO05D004065 1.8e-21 107.8 148 60.1
SMO367G0495 Selaginella moellendorffii HOM05D003655 ORTHO05D004065 2.3e-21 107.5 307 38.1
CiPaw.04G027900 Carya illinoinensis HOM05D003655 ORTHO05D004065 4.0e-21 106.7 208 38.5
PSO017G6373 Papaver somniferum HOM05D003655 ORTHO05D004065 6.8e-21 105.9 209 36.4
CBR_g4653 Chara braunii HOM05D003655 ORTHO05D004065 3.2e-18 97.1 124 43.5
Medtr2g449970 Medicago truncatula HOM05D003655 ORTHO05D004065 8.9e-13 79.0 48 70.8
Sopen02g031230 Solanum pennellii HOM05D003655 ORTHO05D004065 2.2e-11 74.3 188 36.7
Cpa.g.sc108.56 Carica papaya HOM05D003655 ORTHO05D004065 1.1e-10 72.0 85 54.1
Ca_06248_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 7.8e-09 65.9 80 55.0
Ca_29533_v3 Cicer arietinum L. HOM05D003655 ORTHO05D004065 7.8e-09 65.9 80 55.0
Actinidia16938 Actinidia chinensis HOM05D003655 ORTHO05D004065 2.3e-08 64.3 119 42.9
AUR62012685 Chenopodium quinoa HOM05D000561 ORTHO05D000514 6.2e-06 56.2 106 34.9
AUR62021972 Chenopodium quinoa HOM05D000561 ORTHO05D000514 6.2e-06 56.2 106 34.9


User provided reference genes

Program Settings