Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 1.7e-257 892.1 433 100.0
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 6.2e-236 820.5 445 89.0
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 3.2e-224 781.6 433 84.3
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 5.1e-222 774.2 433 83.6
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 1.1e-221 773.1 439 84.5
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 3.3e-221 771.5 446 85.4
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 2.6e-218 761.9 433 82.0
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 1.7e-217 759.2 431 83.3
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 2.2e-217 758.8 435 82.5
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 6.5e-217 757.3 435 82.1
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 1.4e-216 756.1 433 82.7
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 1.9e-216 755.7 433 82.4
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 3.2e-216 755.0 435 82.3
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 3.2e-216 755.0 433 82.7
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 4.2e-216 754.6 440 82.5
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 5.5e-216 754.2 435 82.5
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.1e-215 752.3 440 82.5
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.1e-215 752.3 440 82.3
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 2.7e-215 751.9 433 80.6
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 3.0e-214 748.4 433 80.8
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 1.1e-213 746.5 433 81.1
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.0e-213 745.7 439 81.5
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 6.3e-212 740.7 435 80.0
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 1.4e-211 739.6 435 80.9
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 2.4e-211 738.8 435 81.4
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 2.4e-211 738.8 427 81.7
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.2e-210 736.5 428 82.2
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 1.2e-210 736.5 426 81.0
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 2.0e-210 735.7 433 80.8
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 2.6e-210 735.3 432 79.4
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 4.5e-210 734.6 435 80.0
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 2.2e-209 732.3 435 79.8
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 3.8e-209 731.5 434 80.6
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 5.5e-208 727.6 435 79.5
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 2.1e-207 725.7 435 79.1
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 6.1e-207 724.2 435 78.2
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 5.7e-205 717.6 433 77.4
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 9.7e-205 716.8 436 78.0
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 2.2e-204 715.7 436 79.6
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 3.1e-203 711.8 433 76.4
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 1.5e-202 709.5 433 76.0
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 3.5e-202 708.4 457 75.7
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 1.3e-201 706.4 433 77.1
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 1.1e-200 703.4 485 70.7
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 9.4e-200 700.3 434 76.5
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 3.6e-199 698.4 397 83.9
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 3.6e-199 698.4 435 77.2
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 3.0e-198 695.3 435 76.1
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 2.8e-196 688.7 427 76.8
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 3.1e-195 685.3 437 73.7
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 2.6e-194 682.2 435 74.0
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 5.0e-193 677.9 431 73.5
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 5.0e-193 677.9 495 70.1
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 2.5e-192 675.6 437 75.3
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 4.2e-192 674.9 436 74.3
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 1.2e-191 673.3 426 75.4
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 6.1e-191 671.0 401 77.8
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 8.0e-191 670.6 432 72.5
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 2.3e-190 669.1 435 73.6
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 2.0e-189 666.0 437 73.5
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 2.6e-189 665.6 403 78.2
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 7.5e-189 664.1 427 74.0
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 1.3e-188 663.3 435 73.8
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 2.4e-187 659.1 433 73.9
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 2.0e-186 656.0 436 72.9
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 2.0e-186 656.0 421 72.7
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 2.0e-186 656.0 426 73.9
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 2.7e-186 655.6 434 73.5
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 1.3e-185 653.3 426 72.8
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 6.5e-185 651.0 435 72.4
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 6.5e-185 651.0 435 72.4
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 1.1e-184 650.2 455 69.7
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 4.2e-184 648.3 403 74.9
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 1.5e-181 639.8 422 71.6
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 4.4e-181 638.3 404 74.8
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 3.7e-180 635.2 437 71.2
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 7.0e-179 630.9 425 72.0
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 4.5e-178 628.2 439 69.7
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 1.0e-177 627.1 435 69.4
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 1.3e-177 626.7 419 71.6
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 3.8e-177 625.2 403 73.4
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 8.6e-177 624.0 435 69.7
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 5.5e-176 621.3 434 68.9
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 1.5e-173 613.2 435 67.6
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 2.6e-173 612.5 482 63.7
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 4.4e-173 611.7 379 77.8
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 4.9e-172 608.2 431 67.5
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 1.6e-170 603.2 433 67.4
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.6e-167 593.2 465 67.3
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 8.9e-166 587.4 390 73.3
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 9.8e-165 583.9 433 66.7
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 9.2e-163 577.4 352 77.6
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 2.3e-158 562.8 434 60.8
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 3.0e-153 545.8 434 62.0
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 1.5e-152 543.5 394 67.8
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 5.2e-150 535.0 434 64.3
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 2.6e-149 532.7 440 62.0
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 7.1e-147 524.6 444 62.4
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 2.5e-144 516.2 417 63.8
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 7.3e-144 514.6 365 67.1
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 1.4e-134 483.8 410 59.8
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 2.0e-133 479.9 311 73.6
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 5.3e-126 455.3 429 53.1
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 2.2e-124 449.9 435 53.1
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 4.2e-123 445.7 289 74.4
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 2.7e-122 443.0 288 74.0
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 3.5e-122 442.6 288 74.3
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 2.5e-120 436.4 444 54.1
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 2.0e-117 426.8 432 54.9
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 1.7e-116 423.7 464 51.1
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 2.5e-115 419.9 439 48.7
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 7.9e-114 414.8 433 51.0
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 2.8e-103 379.8 644 38.8
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 3.7e-103 379.4 436 46.3
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 1.6e-98 364.0 278 62.6
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 5.3e-94 349.0 309 58.3
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 1.1e-88 331.3 192 77.6
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 3.3e-88 329.7 698 33.8
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 4.1e-86 322.8 274 59.1
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 2.7e-66 256.9 541 34.4
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 6.8e-65 252.3 328 47.0
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 1.4e-57 228.0 161 70.8
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 7.5e-56 222.2 154 70.1
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 1.4e-49 201.4 122 75.4
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 2.3e-44 184.1 107 77.6
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 3.4e-40 170.2 192 44.8
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 1.1e-35 155.2 297 35.4
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 3.3e-35 153.7 297 35.4
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 5.8e-32 142.9 87 78.2
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 1.3e-31 141.7 126 58.7
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 2.5e-27 127.5 85 67.1
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 2.4e-25 120.9 65 87.7
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.1e-21 107.8 58 84.5
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 6.2e-18 96.3 67 73.1
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 4.0e-17 93.6 73 58.9
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 4.9e-15 86.7 462 24.0
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 8.4e-15 85.9 91 44.0
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 4.8e-10 70.1 43 69.8
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 2.6e-08 64.3 44 68.2
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 7.6e-08 62.8 92 42.4
Medtr6g007060 Medicago truncatula HOM05D001104 ORTHO05D006624 9.3e-06 55.8 42 52.4


User provided reference genes

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