Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G273600 Prunus persica HOM05D007405 ORTHO05D009256 9.4e-161 571.2 618 100.0
MD09G1044200 Malus domestica HOM05D007405 ORTHO05D009256 3.1e-95 353.6 681 78.6
Cfa007501 Carpinus fangiana HOM05D007405 ORTHO05D009256 3.9e-82 310.1 680 74.7
Dinv33696 Davidia involucrata HOM05D007405 ORTHO05D009256 2.4e-79 300.8 605 82.1
Haze_14594 Corylus avellana HOM05D007405 ORTHO05D009256 1.4e-76 291.6 677 75.0
CiPaw.04G020600 Carya illinoinensis HOM05D007405 ORTHO05D009256 4.9e-69 266.5 570 72.3
QL02p079911 Quercus lobata HOM05D007405 ORTHO05D009256 3.2e-68 263.8 568 71.8
ClCG10G014780 Citrullus lanatus HOM05D007405 ORTHO05D009256 2.1e-67 261.2 689 71.4
FAN05G4748 Fragaria x ananassa HOM05D007405 ORTHO05D009256 2.3e-66 257.7 646 68.7
CsaV3_3G041760 Cucumis sativus L. HOM05D007405 ORTHO05D009256 1.9e-65 254.6 583 69.3
CANSAT64G0564 Cannabis sativa HOM05D007405 ORTHO05D009256 3.1e-63 247.3 682 70.8
FAN09G1987 Fragaria x ananassa HOM05D007405 ORTHO05D009256 9.0e-63 245.7 673 72.4
MELO3C009896.2 Cucumis melo HOM05D007405 ORTHO05D009256 4.5e-62 243.4 577 69.5
RcHm_v2.0_Chr2g0169431 Rosa chinensis HOM05D007405 ORTHO05D009256 4.5e-62 243.4 630 75.4
Oeu027767.1 Olea europaea HOM05D007405 ORTHO05D009256 1.0e-61 242.3 657 72.6
FAN02G3519 Fragaria x ananassa HOM05D007405 ORTHO05D009256 1.4e-60 238.4 673 69.5
Sopen02g032330 Solanum pennellii HOM05D007405 ORTHO05D009256 5.5e-60 236.5 681 70.8
GSVIVG01032591001 Vitis vinifera HOM05D007405 ORTHO05D009256 1.0e-58 232.3 673 71.8
FAN14G0904 Fragaria x ananassa HOM05D007405 ORTHO05D009256 3.9e-58 230.3 673 71.6
FAN14G4765 Fragaria x ananassa HOM05D007405 ORTHO05D009256 3.9e-58 230.3 673 71.6
FvH4_6g49520 Fragaria vesca HOM05D007405 ORTHO05D009256 6.7e-58 229.6 671 71.5
Sed0003758 Sechium edule HOM05D007405 ORTHO05D009256 8.8e-58 229.2 575 67.8
Solyc02g087560.1 Solanum lycopersicum HOM05D007405 ORTHO05D009256 9.7e-57 225.7 681 70.2
Lj7A402T45 Lonicera japonica HOM05D007405 ORTHO05D009256 1.7e-56 224.9 619 75.0
Psat5g105040 Pisum sativum HOM05D007405 ORTHO05D009256 2.8e-56 224.2 518 71.2
AT5G39980 Arabidopsis thaliana HOM05D007405 ORTHO05D009256 3.7e-56 223.8 678 69.9
MSTRG.19401 Avicennia marina HOM05D007405 ORTHO05D009256 3.7e-56 223.8 650 72.3
Migut.H00884 Erythranthe guttata HOM05D007405 ORTHO05D009256 3.7e-56 223.8 546 70.3
Glyma.18G000700 Glycine max HOM05D007405 ORTHO05D009256 3.7e-56 223.8 642 71.7
COL.COLO4_25223 Corchorus olitorius HOM05D000330 ORTHO05D000209 4.8e-56 223.4 528 70.6
AL7G50110 Arabidopsis lyrata HOM05D007405 ORTHO05D009256 6.3e-56 223.0 680 69.9
EL10Ac2g02615 Beta vulgaris HOM05D007405 ORTHO05D009256 5.3e-55 219.9 542 70.5
Cpa.g.sc14.54 Carica papaya HOM05D007405 ORTHO05D009256 9.1e-55 219.2 407 37.6
Cc07_g02870 Coffea canephora HOM05D007405 ORTHO05D009256 9.1e-55 219.2 595 70.6
Ah.10g031180 Amaranthus hybridus HOM05D007405 ORTHO05D009256 1.5e-54 218.4 542 70.3
PGSC0003DMG400001306 Solanum tuberosum HOM05D007405 ORTHO05D009256 2.6e-54 217.6 592 76.4
Potri.017G075700 Populus trichocarpa HOM05D007405 ORTHO05D009256 3.4e-54 217.2 672 65.2
CSS0011088 Camellia sinensis var. sinensis HOM05D007405 ORTHO05D009256 5.9e-54 216.5 489 75.7
CSS0008879 Camellia sinensis var. sinensis HOM05D007405 ORTHO05D009256 2.2e-53 214.5 533 71.1
Sabra17G0067600 Salix brachista HOM05D007405 ORTHO05D009256 3.8e-53 213.8 672 64.4
Nitab4.5_0002265g0130 Nicotiana tabacum HOM05D007405 ORTHO05D009256 1.1e-52 212.2 657 70.2
Atru.chr8.2441 Acer truncatum HOM05D007405 ORTHO05D009256 1.9e-52 211.5 218 55.0
Manes.17G025500 Manihot esculenta HOM05D007405 ORTHO05D009256 5.5e-52 209.9 213 55.9
CAN.G206.101 Capsicum annuum HOM05D007405 ORTHO05D009256 2.7e-51 207.6 652 70.7
Ca_16386_v3 Cicer arietinum L. HOM05D007405 ORTHO05D009256 3.6e-51 207.2 528 68.0
Ca_29700_v3 Cicer arietinum L. HOM05D007405 ORTHO05D009256 3.6e-51 207.2 528 68.0
Glyma.11G256300 Glycine max HOM05D007405 ORTHO05D009256 3.6e-51 207.2 657 69.3
Sp7g02090 Schrenkiella parvula HOM05D007405 ORTHO05D009256 3.6e-51 207.2 680 69.1
TPR.G22753 Trifolium pratense HOM05D007405 ORTHO05D009256 4.7e-51 206.8 517 69.4
CARHR262150 Cardamine hirsuta HOM05D007405 ORTHO05D009256 6.1e-51 206.5 685 68.9
Ciclev10011224m.g Citrus clementina HOM05D007405 ORTHO05D009256 6.1e-51 206.5 220 55.0
Thhalv10028245m.g Eutrema salsugineum HOM05D007405 ORTHO05D009256 1.0e-50 205.7 199 60.8
Lsat_1_v5_gn_2_90480 Lactuca sativa HOM05D007405 ORTHO05D009256 1.0e-50 205.7 673 68.5
AUR62018305 Chenopodium quinoa HOM05D007405 ORTHO05D009256 3.9e-50 203.8 532 70.1
A07p20170 Brassica napus HOM05D007405 ORTHO05D009256 5.1e-50 203.4 187 59.9
BcaC08g44440 Brassica carinata HOM05D007405 ORTHO05D009256 6.7e-50 203.0 193 59.1
C06p18840 Brassica napus HOM05D007405 ORTHO05D009256 6.7e-50 203.0 193 59.1
BolC6t37089H Brassica oleracea HOM05D007405 ORTHO05D009256 6.7e-50 203.0 193 59.1
VMungo1383G1541 Vigna mungo HOM05D007405 ORTHO05D009256 8.8e-50 202.6 532 68.4
THA.LOC104823926 Tarenaya hassleriana HOM05D007405 ORTHO05D009256 1.5e-49 201.8 676 69.8
BraA07t29716Z Brassica rapa HOM05D007405 ORTHO05D009256 2.6e-49 201.1 187 59.4
AUR62030576 Chenopodium quinoa HOM05D007405 ORTHO05D009256 3.3e-49 200.7 530 70.0
Thecc.04G073000 Theobroma cacao HOM05D007405 ORTHO05D009256 5.7e-49 199.9 673 68.8
FAN02G3321 Fragaria x ananassa HOM05D007405 ORTHO05D009256 1.1e-47 195.7 216 54.6
Sc11g0006880 Simmondsia chinensis HOM05D007405 ORTHO05D009256 1.4e-47 195.3 530 67.9
Actinidia36037 Actinidia chinensis HOM05D007405 ORTHO05D009256 7.0e-47 193.0 669 58.6
PGR031G2628 Punica granatum HOM05D007405 ORTHO05D009256 1.2e-46 192.2 113 81.4
SGA_v2.0_scaffold115G32153 Striga asiatica HOM05D007405 ORTHO05D009256 1.5e-46 191.8 197 54.3
Carub.0007s3571 Capsella rubella HOM05D007405 ORTHO05D009256 2.0e-46 191.4 671 68.6
Medtr3g083680 Medicago truncatula HOM05D007405 ORTHO05D009256 2.0e-46 191.4 506 68.2
Aa31LG9G1630 Aethionema arabicum HOM05D000330 ORTHO05D009256 2.2e-45 188.0 199 55.3
Duzib147G0736 Durio zibethinus HOM05D007405 ORTHO05D009256 2.2e-45 188.0 185 55.7
Lj6g0001930 Lotus japonicus HOM05D007405 ORTHO05D009256 2.2e-45 188.0 182 59.3
Lalb_Chr23g0278451 Lupinus albus HOM05D007405 ORTHO05D009256 2.2e-45 188.0 179 57.5
DCAR_011169 Daucus carota HOM05D007405 ORTHO05D009256 3.8e-45 187.2 219 50.2
Gohir.A07G215301 Gossypium hirsutum HOM05D007405 ORTHO05D009256 5.0e-45 186.8 186 55.9
TWI56G0828 Tripterygium wilfordii HOM05D007405 ORTHO05D009256 6.5e-45 186.4 196 56.6
PSO832G3067 Papaver somniferum HOM05D007405 ORTHO05D009256 1.1e-44 185.7 588 69.0
Gohir.D07G222200 Gossypium hirsutum HOM05D007405 ORTHO05D009256 5.5e-44 183.3 186 54.8
Gorai.001G256500 Gossypium raimondii HOM05D007405 ORTHO05D009256 5.5e-44 183.3 186 54.8
TAR039G0001 Trochodendron aralioides HOM05D002295 ORTHO05D002789 9.4e-44 182.6 522 69.9
HanXRQChr14g0449381 Helianthus annuus HOM05D007405 ORTHO05D009256 3.6e-43 180.6 181 54.7
PSO591G0419 Papaver somniferum HOM05D007405 ORTHO05D009256 3.6e-43 180.6 588 68.9
BcaB02g07958 Brassica carinata HOM05D007405 ORTHO05D009256 1.1e-41 175.6 193 50.8
Nn1g09226 Nelumbo nucifera HOM05D007405 ORTHO05D009256 5.7e-41 173.3 198 52.0
Rhsim10G0030900 Rhododendron simsii HOM05D007405 ORTHO05D009256 1.8e-34 151.8 95 76.8
Peaxi162Scf00129g00512 Petunia axillaris HOM05D007405 ORTHO05D009256 1.5e-33 148.7 565 73.6
MBI08_g09795_MAGBIO Magnolia biondii HOM05D007405 ORTHO05D009256 2.0e-30 138.3 77 83.1
Phvul.001G268500 Phaseolus vulgaris HOM05D007405 ORTHO05D009256 1.0e-29 136.0 72 88.9
ATR1127G129 Amborella trichopoda HOM05D007405 ORTHO05D009256 1.5e-28 132.1 156 48.1
CDE06G2170 Ceratophyllum demersum HOM05D007405 ORTHO05D009256 4.2e-28 130.6 177 66.7
Nitab4.5_0000564g0400 Nicotiana tabacum HOM05D007405 ORTHO05D009256 1.0e-26 125.9 185 80.0
Pp3c3_5760 Physcomitrium patens HOM05D007405 ORTHO05D009256 2.7e-22 111.3 102 49.0
Pp3c3_5764 Physcomitrium patens HOM05D007405 ORTHO05D009256 2.7e-22 111.3 102 49.0
SEGI_22031 Sequoiadendron giganteum HOM05D007405 ORTHO05D009256 5.0e-21 107.1 135 41.5
AagrBONN_evm.TU.Sc2ySwM_117.2241 Anthoceros agrestis HOM05D007405 ORTHO05D009256 4.7e-19 100.5 100 47.0
Mapoly0061s0076 Marchantia polymorpha HOM05D007405 ORTHO05D009256 1.0e-18 99.4 131 42.7
Eucgr.J02141 Eucalyptus grandis HOM05D007405 ORTHO05D009256 1.5e-17 95.5 53 83.0
HPP92_019727 Vanilla planifolia HOM05D007405 ORTHO05D009256 5.7e-17 93.6 149 41.6
Zm00001eb148940 Zea mays HOM05D007405 ORTHO05D009256 2.9e-16 91.3 69 58.0
Os01g0833000 Oryza sativa ssp. japonica HOM05D007405 ORTHO05D009256 3.7e-16 90.9 71 56.3
FAN02G2814 Fragaria x ananassa HOM05D007405 ORTHO05D009256 1.0e-13 82.8 40 95.0
SMO367G0452 Selaginella moellendorffii HOM05D007405 ORTHO05D009256 2.3e-13 81.6 59 59.3
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 6.8e-10 70.1 131 33.6
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 6.8e-10 70.1 131 29.8
Actinidia06062 Actinidia chinensis HOM05D007405 ORTHO05D009256 1.2e-09 69.3 48 79.2
FvH4_6g44930 Fragaria vesca HOM05D002479 ORTHO05D002675 2.6e-09 68.2 130 28.5
FAN05G3474 Fragaria x ananassa HOM05D002479 ORTHO05D002675 2.6e-09 68.2 130 28.5
FAN09G3013 Fragaria x ananassa HOM05D002479 ORTHO05D002675 3.4e-09 67.8 130 27.7
CSS0000020 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 5.8e-09 67.0 130 28.5
FAN02G3196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 5.8e-09 67.0 130 27.7
Solyc07g054480.3 Solanum lycopersicum HOM05D002479 ORTHO05D002675 7.5e-09 66.6 130 27.7
Sopen07g028420 Solanum pennellii HOM05D002479 ORTHO05D002675 7.5e-09 66.6 130 27.7
Cc05_g06520 Coffea canephora HOM05D002479 ORTHO05D002675 1.3e-08 65.9 130 26.2
Dinv01391 Davidia involucrata HOM05D002479 ORTHO05D002675 1.3e-08 65.9 130 27.7
FAN14G2792 Fragaria x ananassa HOM05D002479 ORTHO05D002675 1.3e-08 65.9 130 27.7
MD09G1091700 Malus domestica HOM05D002479 ORTHO05D002675 1.3e-08 65.9 139 27.3
RcHm_v2.0_Chr2g0162121 Rosa chinensis HOM05D002479 ORTHO05D002675 1.3e-08 65.9 130 27.7
PSO210G1488 Papaver somniferum HOM05D002479 ORTHO05D002675 1.7e-08 65.5 130 32.3
FAN02G2590 Fragaria x ananassa HOM05D007405 ORTHO05D009256 2.2e-08 65.1 33 87.9
PGSC0003DMG400018365 Solanum tuberosum HOM05D002479 ORTHO05D002675 2.2e-08 65.1 130 27.7
Actinidia06059 Actinidia chinensis HOM05D007405 ORTHO05D009256 3.7e-08 64.3 47 74.5
Peaxi162Scf00007g00285 Petunia axillaris HOM05D002479 ORTHO05D002675 3.7e-08 64.3 130 26.9
HanXRQChr15g0480341 Helianthus annuus HOM05D002479 ORTHO05D002675 4.9e-08 63.9 131 28.2
Prupe.3G233300 Prunus persica HOM05D002479 ORTHO05D002675 4.9e-08 63.9 130 27.7
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 8.3e-08 63.2 120 28.3
Lsat_1_v5_gn_3_39301 Lactuca sativa HOM05D002479 ORTHO05D002675 8.3e-08 63.2 133 25.6
Oeu043369.1 Olea europaea HOM05D002479 ORTHO05D002675 8.3e-08 63.2 130 27.7
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 8.3e-08 63.2 98 32.7
CDE05G0456 Ceratophyllum demersum HOM05D002479 ORTHO05D002675 1.1e-07 62.8 122 30.3
ECA246G4149 Erigeron canadensis HOM05D002479 ORTHO05D002675 1.1e-07 62.8 130 27.7
MD17G1081600 Malus domestica HOM05D002479 ORTHO05D002675 1.4e-07 62.4 130 26.9
Nitab4.5_0027477g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 1.4e-07 62.4 130 26.9
Nitab4.5_0009520g0020 Nicotiana tabacum HOM05D002479 ORTHO05D002675 1.9e-07 62.0 130 26.9
SGA_v2.0_scaffold117G32408 Striga asiatica HOM05D002479 ORTHO05D002675 1.9e-07 62.0 151 24.5
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 1.9e-07 62.0 130 30.0
arahy.Tifrunner.gnm1.ann1.8Z7TM2 Arachis hypogaea HOM05D002479 ORTHO05D002675 2.4e-07 61.6 139 25.9
CAN.G996.9 Capsicum annuum HOM05D002479 ORTHO05D002675 2.4e-07 61.6 130 26.9
Haze_13105 Corylus avellana HOM05D002479 ORTHO05D002675 2.4e-07 61.6 130 26.9
Cfa014560 Carpinus fangiana HOM05D002479 ORTHO05D002675 3.2e-07 61.2 130 26.9
MELO3C033525.2 Cucumis melo HOM05D002479 ORTHO05D002675 3.2e-07 61.2 130 26.2
LjContig00141g0004174 Lotus japonicus HOM05D002479 ORTHO05D002675 4.1e-07 60.8 108 28.7
MSTRG.14189 Avicennia marina HOM05D002479 ORTHO05D002675 5.4e-07 60.5 130 28.5
CSS0026566 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 5.4e-07 60.5 100 30.0
CSS0032076 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 5.4e-07 60.5 100 30.0
CSS0034469 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 5.4e-07 60.5 122 27.0
Mapoly0019s0056 Marchantia polymorpha HOM05D002479 ORTHO05D002675 5.4e-07 60.5 123 29.3
Ah.01g005230 Amaranthus hybridus HOM05D002479 ORTHO05D002675 7.0e-07 60.1 130 27.7
CANSAT78G2316 Cannabis sativa HOM05D002479 ORTHO05D002675 7.0e-07 60.1 96 30.2
Rhsim05G0175800 Rhododendron simsii HOM05D002479 ORTHO05D002675 7.0e-07 60.1 92 30.4
Glyma.08G174800 Glycine max HOM05D002479 ORTHO05D002675 9.2e-07 59.7 225 25.8
Actinidia07832 Actinidia chinensis HOM05D002479 ORTHO05D002675 1.2e-06 59.3 105 26.7
Aqoxy4G01360 Aquilegia oxysepala HOM05D002479 ORTHO05D002675 1.2e-06 59.3 130 28.5
PSO170G3719 Papaver somniferum HOM05D002479 ORTHO05D002675 1.2e-06 59.3 148 22.3
Lalb_Chr15g0088581 Lupinus albus HOM05D002479 ORTHO05D002675 1.6e-06 58.9 97 28.9
Sed0011590 Sechium edule HOM05D002479 ORTHO05D002675 1.6e-06 58.9 130 26.2
QL06p014970 Quercus lobata HOM05D002479 ORTHO05D002675 2.0e-06 58.5 123 23.6
HPP92_016533 Vanilla planifolia HOM05D002479 ORTHO05D002675 2.0e-06 58.5 105 33.3
Ciclev10017547m.g Citrus clementina HOM05D002479 ORTHO05D002675 3.5e-06 57.8 105 28.6
QL08p037589 Quercus lobata HOM05D002479 ORTHO05D002675 3.5e-06 57.8 130 24.6
TWI36G0440 Tripterygium wilfordii HOM05D002479 ORTHO05D002675 3.5e-06 57.8 105 28.6
arahy.Tifrunner.gnm1.ann1.P90V4Z Arachis hypogaea HOM05D002479 ORTHO05D002675 4.6e-06 57.4 206 24.3
CANSAT64G1102 Cannabis sativa HOM05D002479 ORTHO05D002675 4.6e-06 57.4 105 29.5
MBI02_g29389_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 4.6e-06 57.4 97 33.0
PSO528G0065 Papaver somniferum HOM05D002479 ORTHO05D002675 4.6e-06 57.4 123 22.8
ClCG08G000450 Citrullus lanatus HOM05D002479 ORTHO05D002675 6.0e-06 57.0 196 25.5
Dinv05730 Davidia involucrata HOM05D002479 ORTHO05D002675 6.0e-06 57.0 92 28.3
SalBow1G6410 Salvia bowleyana HOM05D002479 ORTHO05D002675 6.0e-06 57.0 130 25.4


User provided reference genes

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