Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G219000 Prunus persica HOM05D000492 ORTHO05D020760 1.1e-17 92.4 55 100.0
RcHm_v2.0_Chr2g0159811 Rosa chinensis HOM05D000492 ORTHO05D020760 8.2e-16 86.3 55 83.6
MD09G1106600 Malus domestica HOM05D000492 ORTHO05D020760 2.4e-15 84.7 55 90.9
CsaV3_2G035100 Cucumis sativus L. HOM05D000492 ORTHO05D000499 3.1e-15 84.3 54 79.6
MELO3C019244.2 Cucumis melo HOM05D000492 ORTHO05D000499 4.0e-15 84.0 54 77.8
Sed0007283 Sechium edule HOM05D000492 ORTHO05D000499 4.0e-15 84.0 54 81.5
PGR142G0760 Punica granatum HOM05D000492 ORTHO05D000499 1.5e-14 82.0 54 81.5
FAN02G0103 Fragaria x ananassa HOM05D000492 ORTHO05D000499 2.0e-14 81.6 55 89.1
FAN05G0922 Fragaria x ananassa HOM05D000492 ORTHO05D000499 2.0e-14 81.6 55 89.1
Phvul.005G114200 Phaseolus vulgaris HOM05D000492 ORTHO05D000499 2.6e-14 81.3 54 77.8
Thecc.02G312500 Theobroma cacao HOM05D000492 ORTHO05D000499 2.6e-14 81.3 54 90.7
FvH4_6g43430 Fragaria vesca HOM05D000492 ORTHO05D000499 3.4e-14 80.9 54 90.7
Gohir.A03G109700 Gossypium hirsutum HOM05D000492 ORTHO05D000499 5.8e-14 80.1 54 88.9
Gohir.D02G134500 Gossypium hirsutum HOM05D000492 ORTHO05D000499 5.8e-14 80.1 54 88.9
Gorai.005G150400 Gossypium raimondii HOM05D000492 ORTHO05D000499 5.8e-14 80.1 54 88.9
CANSAT64G2584 Cannabis sativa HOM05D000492 ORTHO05D000499 7.6e-14 79.7 54 87.0
QL08p033540 Quercus lobata HOM05D000492 ORTHO05D020760 7.6e-14 79.7 53 77.4
CAN.G921.15 Capsicum annuum HOM05D000492 ORTHO05D000499 1.7e-13 78.6 51 78.4
Duzib268G0711 Durio zibethinus HOM05D000492 ORTHO05D000499 1.7e-13 78.6 54 88.9
FAN09G1967 Fragaria x ananassa HOM05D000492 ORTHO05D000499 1.7e-13 78.6 54 88.9
Glyma.12G194900 Glycine max HOM05D000492 ORTHO05D020760 1.7e-13 78.6 54 83.3
GSVIVG01030607001 Vitis vinifera HOM05D000492 ORTHO05D000499 1.7e-13 78.6 52 76.9
TWI75G1345 Tripterygium wilfordii HOM05D000492 ORTHO05D000499 2.9e-13 77.8 54 87.0
Eucgr.K00801 Eucalyptus grandis HOM05D000492 ORTHO05D000499 3.8e-13 77.4 54 74.1
Haze_12886 Corylus avellana HOM05D000492 ORTHO05D000499 5.0e-13 77.0 54 85.2
TAR624G1324 Trochodendron aralioides HOM05D000492 ORTHO05D000499 6.5e-13 76.6 54 81.5
Potri.007G123000 Populus trichocarpa HOM05D000492 ORTHO05D000499 8.4e-13 76.3 53 83.0
Zm00001eb323060 Zea mays HOM05D000492 ORTHO05D000499 1.4e-12 75.5 55 76.4
Glyma.13G307600 Glycine max HOM05D000492 ORTHO05D000499 1.9e-12 75.1 54 83.3
Aqoxy4G01978 Aquilegia oxysepala HOM05D000492 ORTHO05D000499 2.5e-12 74.7 53 71.7
MBI02_g10108_MAGBIO Magnolia biondii HOM05D000492 ORTHO05D000499 3.2e-12 74.3 54 83.3
HPP92_001785 Vanilla planifolia HOM05D000492 ORTHO05D000499 3.2e-12 74.3 52 71.2
Migut.H01223 Erythranthe guttata HOM05D000492 ORTHO05D000499 4.2e-12 73.9 54 72.2
ClCG02G008540 Citrullus lanatus HOM05D000492 ORTHO05D000499 5.5e-12 73.6 54 74.1
Manes.12G075900 Manihot esculenta HOM05D000492 ORTHO05D000499 9.3e-12 72.8 54 77.8
Psat5g264800 Pisum sativum HOM05D000492 ORTHO05D000499 2.1e-11 71.6 54 66.7
Os07g0528900 Oryza sativa ssp. japonica HOM05D000492 ORTHO05D020760 2.7e-11 71.2 54 68.5
PSO675G7830 Papaver somniferum HOM05D000492 ORTHO05D000499 2.7e-11 71.2 54 75.9
Rhsim06G0159300 Rhododendron simsii HOM05D000492 ORTHO05D020760 6.1e-11 70.1 53 75.5
Solyc07g052470.3 Solanum lycopersicum HOM05D000492 ORTHO05D000499 1.0e-10 69.3 54 77.8
Sopen07g026100 Solanum pennellii HOM05D000492 ORTHO05D000499 1.0e-10 69.3 54 77.8
DCAR_012949 Daucus carota HOM05D000492 ORTHO05D000499 1.8e-10 68.6 53 73.6
PSO541G2309 Papaver somniferum HOM05D000492 ORTHO05D000499 1.8e-10 68.6 54 64.8
DCAR_019284 Daucus carota HOM05D000492 ORTHO05D000499 3.9e-10 67.4 53 71.7
Lalb_Chr24g0393111 Lupinus albus HOM05D000492 ORTHO05D000499 5.1e-10 67.0 53 64.2
MD09G1106700 Malus domestica HOM05D000492 ORTHO05D000499 5.1e-10 67.0 52 75.0
TAR626G1317 Trochodendron aralioides HOM05D000492 ORTHO05D000499 5.1e-10 67.0 52 65.4
Ca_01592_v3 Cicer arietinum L. HOM05D000492 ORTHO05D000499 6.7e-10 66.6 52 75.0
HPP92_015648 Vanilla planifolia HOM05D000492 ORTHO05D000499 8.7e-10 66.2 53 62.3
BcaB08g37293 Brassica carinata HOM05D000492 ORTHO05D000499 1.1e-09 65.9 52 69.2
Prupe.3G218900 Prunus persica HOM05D000492 ORTHO05D000499 1.1e-09 65.9 52 75.0
BcaB08g37290 Brassica carinata HOM05D000492 ORTHO05D000499 1.5e-09 65.5 52 67.3
vmacro12221 Vaccinium macrocarpon HOM05D000492 ORTHO05D000499 1.5e-09 65.5 52 63.5
Actinidia09706 Actinidia chinensis HOM05D000492 ORTHO05D000499 1.9e-09 65.1 52 61.5
Glyma.12G194800 Glycine max HOM05D000492 ORTHO05D000499 1.9e-09 65.1 52 69.2
Medtr2g088700 Medicago truncatula HOM05D000492 ORTHO05D000499 1.9e-09 65.1 52 71.2
Rhsim06G0159400 Rhododendron simsii HOM05D000492 ORTHO05D000499 1.9e-09 65.1 52 61.5
VMungo1080G0466 Vigna mungo HOM05D000492 ORTHO05D000499 1.9e-09 65.1 52 69.2
HPP92_017611 Vanilla planifolia HOM05D000492 ORTHO05D000499 2.5e-09 64.7 51 60.8
BcaB05g21581 Brassica carinata HOM05D000492 ORTHO05D000499 3.3e-09 64.3 52 69.2
CSS0017653 Camellia sinensis var. sinensis HOM05D000492 ORTHO05D000499 3.3e-09 64.3 51 64.7
CSS0019431 Camellia sinensis var. sinensis HOM05D000492 ORTHO05D000499 3.3e-09 64.3 51 64.7
THA.LOC104805769 Tarenaya hassleriana HOM05D000492 ORTHO05D000499 3.3e-09 64.3 52 67.3
VMungo0331G1488 Vigna mungo HOM05D000492 ORTHO05D000499 3.3e-09 64.3 52 63.5
Aa31LG3G18460 Aethionema arabicum HOM05D000492 ORTHO05D000499 4.3e-09 63.9 52 67.3
AL6G18460 Arabidopsis lyrata HOM05D000492 ORTHO05D000499 4.3e-09 63.9 52 67.3
AT5G08080 Arabidopsis thaliana HOM05D000492 ORTHO05D000499 4.3e-09 63.9 52 67.3
BcaB01g05636 Brassica carinata HOM05D000492 ORTHO05D000499 4.3e-09 63.9 52 67.3
BcaB01g05679 Brassica carinata HOM05D000492 ORTHO05D000499 4.3e-09 63.9 52 67.3
A03p03600 Brassica napus HOM05D000492 ORTHO05D000499 4.3e-09 63.9 52 67.3
C03p04040 Brassica napus HOM05D000492 ORTHO05D000499 4.3e-09 63.9 52 67.3
Carub.0006s0697 Capsella rubella HOM05D000492 ORTHO05D000499 4.3e-09 63.9 52 67.3
Sp6g34870 Schrenkiella parvula HOM05D000492 ORTHO05D000499 4.3e-09 63.9 52 67.3
TPR.G4177 Trifolium pratense HOM05D000492 ORTHO05D000499 4.3e-09 63.9 52 63.5
Hma1.2p1_0249F.1_g102380 Hydrangea macrophylla HOM05D000492 ORTHO05D000499 5.7e-09 63.5 52 63.5
Lj3g0005459 Lotus japonicus HOM05D000492 ORTHO05D000499 5.7e-09 63.5 52 67.3
ATR0697G086 Amborella trichopoda HOM05D000492 ORTHO05D000499 7.4e-09 63.2 51 70.6
ECA233G5824 Erigeron canadensis HOM05D000492 ORTHO05D000499 9.7e-09 62.8 53 56.6
SGA_v2.0_scaffold392G50666 Striga asiatica HOM05D000492 ORTHO05D000499 9.7e-09 62.8 52 67.3
CDE04G3452 Ceratophyllum demersum HOM05D000492 ORTHO05D000499 1.3e-08 62.4 53 60.4
AUR62036289 Chenopodium quinoa HOM05D000492 ORTHO05D000499 1.3e-08 62.4 52 61.5
AUR62039738 Chenopodium quinoa HOM05D000492 ORTHO05D000499 1.3e-08 62.4 52 61.5
Thhalv10014211m.g Eutrema salsugineum HOM05D000492 ORTHO05D000499 1.3e-08 62.4 52 65.4
Lj1A757T34 Lonicera japonica HOM05D000492 ORTHO05D000499 1.3e-08 62.4 52 69.2
Lalb_Chr14g0375751 Lupinus albus HOM05D000492 ORTHO05D000499 1.3e-08 62.4 52 61.5
Peaxi162Scf00007g01112 Petunia axillaris HOM05D000492 ORTHO05D000499 1.3e-08 62.4 52 61.5
SGA_v2.0_scaffold41G15784 Striga asiatica HOM05D000492 ORTHO05D000499 1.3e-08 62.4 52 65.4
MSTRG.10425 Avicennia marina HOM05D000492 ORTHO05D000499 1.6e-08 62.0 52 61.5
Cc05_g04930 Coffea canephora HOM05D000492 ORTHO05D000499 1.6e-08 62.0 52 71.2
Oeu003855.1 Olea europaea HOM05D000492 ORTHO05D000499 1.6e-08 62.0 52 61.5
Actinidia03953 Actinidia chinensis HOM05D000492 ORTHO05D000499 2.2e-08 61.6 53 58.5
EL10Ac5g11775 Beta vulgaris HOM05D000492 ORTHO05D000499 2.2e-08 61.6 53 66.0
BcaC03g13206 Brassica carinata HOM05D000492 ORTHO05D000499 2.2e-08 61.6 52 67.3
C02p03400 Brassica napus HOM05D000492 ORTHO05D000499 2.2e-08 61.6 52 67.3
Cc06_g07150 Coffea canephora HOM05D000492 ORTHO05D000499 3.7e-08 60.8 52 59.6
Migut.L01861 Erythranthe guttata HOM05D000492 ORTHO05D000499 3.7e-08 60.8 52 65.4
HanXRQChr11g0347901 Helianthus annuus HOM05D000492 ORTHO05D000499 3.7e-08 60.8 52 57.7
Lsat_1_v5_gn_8_128461 Lactuca sativa HOM05D000492 ORTHO05D000499 3.7e-08 60.8 52 69.2
Pp3c3_13140 Physcomitrium patens HOM05D000492 ORTHO05D000499 3.7e-08 60.8 52 55.8
CARHR205100 Cardamine hirsuta HOM05D000492 ORTHO05D000499 4.8e-08 60.5 52 71.2
Cpa.g.sc51.144 Carica papaya HOM05D000492 ORTHO05D000499 4.8e-08 60.5 51 70.6
Nitab4.5_0000117g0130 Nicotiana tabacum HOM05D000492 ORTHO05D000499 4.8e-08 60.5 51 68.6
QL08p033537 Quercus lobata HOM05D000492 ORTHO05D000499 6.3e-08 60.1 52 57.7
Solyc10g081580.3 Solanum lycopersicum HOM05D000492 ORTHO05D000499 6.3e-08 60.1 52 59.6
Sopen10g032090 Solanum pennellii HOM05D000492 ORTHO05D000499 6.3e-08 60.1 52 59.6
PGSC0003DMG400025493 Solanum tuberosum HOM05D000492 ORTHO05D000499 6.3e-08 60.1 55 60.0
PGSC0003DMG400028128 Solanum tuberosum HOM05D000492 ORTHO05D000499 6.3e-08 60.1 52 59.6
CiPaw.03G161800 Carya illinoinensis HOM05D000492 ORTHO05D000499 8.2e-08 59.7 52 65.4
Atru.chr6.3162 Acer truncatum HOM05D000492 ORTHO05D000499 1.1e-07 59.3 52 59.6
HanXRQChr11g0347181 Helianthus annuus HOM05D000492 ORTHO05D000499 1.1e-07 59.3 52 67.3
Nitab4.5_0004274g0010 Nicotiana tabacum HOM05D000492 ORTHO05D000499 1.1e-07 59.3 51 64.7
Solyc01g056810.4 Solanum lycopersicum HOM05D000492 ORTHO05D000499 1.1e-07 59.3 51 64.7
Sopen01g025910 Solanum pennellii HOM05D000492 ORTHO05D000499 1.1e-07 59.3 51 64.7
CDE10G0198 Ceratophyllum demersum HOM05D000492 ORTHO05D000499 1.4e-07 58.9 54 63.0
Lsat_1_v5_gn_9_39661 Lactuca sativa HOM05D000492 ORTHO05D000499 1.4e-07 58.9 52 55.8
ECA248G3176 Erigeron canadensis HOM05D000492 ORTHO05D000499 1.8e-07 58.5 52 67.3
Hma1.2p1_0127F.1_g059510 Hydrangea macrophylla HOM05D000492 ORTHO05D000499 1.8e-07 58.5 51 70.6
Hma1.2p1_2172F.1_g316000 Hydrangea macrophylla HOM05D000492 ORTHO05D000499 1.8e-07 58.5 51 70.6
Lj2C418T16 Lonicera japonica HOM05D000492 ORTHO05D000499 1.8e-07 58.5 52 69.2
Oeu063099.1 Olea europaea HOM05D000495 ORTHO05D000499 1.8e-07 58.5 52 57.7
Nitab4.5_0010201g0010 Nicotiana tabacum HOM05D000492 ORTHO05D000499 2.4e-07 58.2 48 62.5
Rhsim03G0055600 Rhododendron simsii HOM05D000492 ORTHO05D000499 2.4e-07 58.2 52 61.5
Rhsim03G0056600 Rhododendron simsii HOM05D000492 ORTHO05D000499 2.4e-07 58.2 52 61.5
Haze_20482 Corylus avellana HOM05D000492 ORTHO05D000499 3.1e-07 57.8 52 55.8
HanXRQChr01g0026321 Helianthus annuus HOM05D000492 ORTHO05D000499 3.1e-07 57.8 52 65.4
MD12G1006500 Malus domestica HOM05D000492 ORTHO05D000499 3.1e-07 57.8 51 56.9
vmacro07537 Vaccinium macrocarpon HOM05D000492 ORTHO05D000499 3.1e-07 57.8 51 56.9
HPP92_000857 Vanilla planifolia HOM05D000492 ORTHO05D000499 3.1e-07 57.8 52 50.0
arahy.Tifrunner.gnm1.ann1.G2H5J3 Arachis hypogaea HOM05D000492 ORTHO05D000499 4.1e-07 57.4 52 57.7
PGR142G2589 Punica granatum HOM05D000492 ORTHO05D000499 4.1e-07 57.4 53 54.7
TWI32G0387 Tripterygium wilfordii HOM05D000492 ORTHO05D000499 5.3e-07 57.0 53 66.0
RcHm_v2.0_Chr2g0159801 Rosa chinensis HOM05D000492 ORTHO05D000499 6.9e-07 56.6 52 53.8
SGA_v2.0_scaffold112G31668 Striga asiatica HOM05D000492 ORTHO05D000499 6.9e-07 56.6 52 51.9
TPR.G9149 Trifolium pratense HOM05D000492 ORTHO05D000499 6.9e-07 56.6 51 58.8
FAN14G5812 Fragaria x ananassa HOM05D000492 ORTHO05D000499 1.2e-06 55.8 52 51.9
MD14G1004100 Malus domestica HOM05D000492 ORTHO05D000499 1.2e-06 55.8 52 61.5
Hund10804 Selenicereus undatus HOM05D000492 ORTHO05D000499 1.2e-06 55.8 52 63.5
Sc01g0005160 Simmondsia chinensis HOM05D000492 ORTHO05D000499 1.2e-06 55.8 52 67.3
Nitab4.5_0001176g0070 Nicotiana tabacum HOM05D000492 ORTHO05D000499 1.5e-06 55.5 48 60.4
Pp3c4_32180 Physcomitrium patens HOM05D000492 ORTHO05D000499 1.5e-06 55.5 52 48.1
MSTRG.26566 Avicennia marina HOM05D000492 ORTHO05D000499 2.0e-06 55.1 53 62.3
DCAR_013472 Daucus carota HOM05D000492 ORTHO05D000499 2.0e-06 55.1 51 60.8
Manes.08G145800 Manihot esculenta HOM05D000492 ORTHO05D000499 2.0e-06 55.1 51 66.7
Aqoxy1G00562 Aquilegia oxysepala HOM05D000492 ORTHO05D000499 2.6e-06 54.7 52 63.5
Ciclev10016039m.g Citrus clementina HOM05D000492 ORTHO05D000499 3.4e-06 54.3 52 65.4
arahy.Tifrunner.gnm1.ann1.55IZK7 Arachis hypogaea HOM05D000492 ORTHO05D000499 4.5e-06 53.9 51 51.0
arahy.Tifrunner.gnm1.ann1.SNC74A Arachis hypogaea HOM05D000492 ORTHO05D000499 4.5e-06 53.9 51 51.0
Nn5g27630 Nelumbo nucifera HOM05D000492 ORTHO05D000499 4.5e-06 53.9 51 60.8
Hund15045 Selenicereus undatus HOM05D000492 ORTHO05D000499 4.5e-06 53.9 52 65.4
TWI60G1190 Tripterygium wilfordii HOM05D000492 ORTHO05D000499 4.5e-06 53.9 53 64.2
C05p63180 Brassica napus HOM05D000492 ORTHO05D000499 5.9e-06 53.5 52 63.5
BolC5t34980H Brassica oleracea HOM05D000492 ORTHO05D000499 5.9e-06 53.5 52 63.5
Ciclev10021315m.g Citrus clementina HOM05D000492 ORTHO05D000499 5.9e-06 53.5 51 64.7
Sabra19G0048200 Salix brachista HOM05D000492 ORTHO05D000499 5.9e-06 53.5 51 64.7
THA.LOC104820781 Tarenaya hassleriana HOM05D000492 ORTHO05D000499 5.9e-06 53.5 52 53.8
MBI17_g38208_MAGBIO Magnolia biondii HOM05D000492 ORTHO05D000499 7.7e-06 53.1 54 63.0
Ah.02g115180 Amaranthus hybridus HOM05D000492 ORTHO05D000499 1.0e-05 52.8 52 63.5
Cpa.g.sc8.224 Carica papaya HOM05D000492 ORTHO05D000499 1.0e-05 52.8 52 63.5
Lj1A1066G51 Lonicera japonica HOM05D000492 ORTHO05D000499 1.0e-05 52.8 51 58.8
PGR042G1856 Punica granatum HOM05D000492 ORTHO05D000499 1.0e-05 52.8 51 66.7


User provided reference genes

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