Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G208000 Prunus persica HOM05D005800 ORTHO05D007636 2.8e-274 948.0 468 100.0
MD09G1116800 Malus domestica HOM05D005800 ORTHO05D007636 3.8e-231 804.7 464 86.4
FAN09G4368 Fragaria x ananassa HOM05D005800 ORTHO05D007636 2.4e-217 758.8 461 80.3
FAN14G5087 Fragaria x ananassa HOM05D005800 ORTHO05D007636 2.3e-215 752.3 461 80.5
Haze_12748 Corylus avellana HOM05D005800 ORTHO05D007636 1.1e-206 723.4 465 77.4
Cfa014300 Carpinus fangiana HOM05D005800 ORTHO05D007636 3.6e-205 718.4 465 76.8
QL08p029973 Quercus lobata HOM05D005800 ORTHO05D007636 4.7e-197 691.4 459 74.9
Atru.chr6.3277 Acer truncatum HOM05D005800 ORTHO05D007636 2.3e-191 672.5 466 71.9
CiPaw.04G192600 Carya illinoinensis HOM05D005800 ORTHO05D007636 6.6e-191 671.0 465 71.8
Thecc.01G184600 Theobroma cacao HOM05D005800 ORTHO05D007636 8.1e-189 664.1 445 74.8
Manes.12G056701 Manihot esculenta HOM05D005800 ORTHO05D007636 1.4e-188 663.3 450 74.2
Potri.014G160300 Populus trichocarpa HOM05D005800 ORTHO05D007636 4.0e-188 661.8 464 71.6
CANSAT64G1164 Cannabis sativa HOM05D005800 ORTHO05D007636 2.0e-187 659.4 464 70.0
Duzib211G0019 Durio zibethinus HOM05D005800 ORTHO05D007636 7.1e-185 651.0 449 72.6
TWI18G1217 Tripterygium wilfordii HOM05D005800 ORTHO05D007636 2.7e-184 649.0 466 70.6
Atru.chr6.3292 Acer truncatum HOM05D005800 ORTHO05D007636 1.3e-183 646.7 433 73.2
Ciclev10018214m.g Citrus clementina HOM05D005800 ORTHO05D007636 6.2e-181 637.9 440 70.7
CSS0012074 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 1.1e-180 637.1 461 69.4
Gorai.001G218100 Gossypium raimondii HOM05D005800 ORTHO05D007636 1.1e-180 637.1 461 69.8
GSVIVG01030530001 Vitis vinifera HOM05D005800 ORTHO05D007636 1.4e-180 636.7 431 73.3
CSS0040237 Camellia sinensis var. sinensis HOM05D005800 ORTHO05D007636 4.0e-180 635.2 461 69.0
Gohir.D07G194900 Gossypium hirsutum HOM05D005800 ORTHO05D007636 8.9e-180 634.0 461 69.4
vmacro09372 Vaccinium macrocarpon HOM05D005800 ORTHO05D007636 1.3e-178 630.2 454 69.8
Actinidia29202 Actinidia chinensis HOM05D005800 ORTHO05D007636 3.2e-177 625.5 459 68.4
Rhsim04G0046700 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.3e-175 620.2 476 66.0
Sabra14G0122000 Salix brachista HOM05D005800 ORTHO05D007636 1.9e-174 616.3 444 69.8
Phvul.003G026900 Phaseolus vulgaris HOM05D005800 ORTHO05D007636 2.0e-171 606.3 439 66.7
Nn1g07331 Nelumbo nucifera HOM05D005800 ORTHO05D007636 3.4e-171 605.5 464 64.7
arahy.Tifrunner.gnm1.ann1.WU8RVJ Arachis hypogaea HOM05D005800 ORTHO05D007636 1.7e-170 603.2 461 63.8
Lj3g0013009 Lotus japonicus HOM05D005800 ORTHO05D007636 1.7e-170 603.2 461 64.0
PGR142G3833 Punica granatum HOM05D005800 ORTHO05D007636 1.7e-170 603.2 436 68.1
Medtr8g012965 Medicago truncatula HOM05D005800 ORTHO05D007636 4.9e-170 601.7 465 63.2
TPR.G17115 Trifolium pratense HOM05D005800 ORTHO05D007636 4.9e-170 601.7 435 66.7
arahy.Tifrunner.gnm1.ann1.ED2J4B Arachis hypogaea HOM05D005800 ORTHO05D007636 1.1e-169 600.5 461 63.6
Glyma.02G100600 Glycine max HOM05D005800 ORTHO05D007636 1.4e-169 600.1 440 65.7
Sed0019308 Sechium edule HOM05D005800 ORTHO05D007636 1.9e-169 599.7 459 65.1
Sc05g0006280 Simmondsia chinensis HOM05D005800 ORTHO05D007636 7.1e-169 597.8 440 63.9
PSO541G2790 Papaver somniferum HOM05D005800 ORTHO05D007636 6.6e-167 591.3 457 65.4
Ca_23308_v3 Cicer arietinum L. HOM05D005800 ORTHO05D007636 1.1e-166 590.5 432 65.7
Peaxi162Scf00007g00131 Petunia axillaris HOM05D005800 ORTHO05D007636 2.5e-166 589.3 438 66.9
VMungo1127G1618 Vigna mungo HOM05D005800 ORTHO05D007636 2.5e-166 589.3 442 65.6
ClCG02G018170 Citrullus lanatus HOM05D005800 ORTHO05D007636 5.6e-166 588.2 447 65.3
THA.LOC104826609 Tarenaya hassleriana HOM05D005800 ORTHO05D007636 9.6e-166 587.4 459 64.9
CsaV3_6G015560 Cucumis sativus L. HOM05D005800 ORTHO05D007636 3.6e-165 585.5 445 66.1
Solyc07g049740.4 Solanum lycopersicum HOM05D005800 ORTHO05D007636 3.6e-165 585.5 463 64.6
AUR62015110 Chenopodium quinoa HOM05D005800 ORTHO05D007636 1.1e-164 583.9 442 65.8
PGSC0003DMG400001079 Solanum tuberosum HOM05D005800 ORTHO05D007636 1.1e-164 583.9 463 63.9
Nitab4.5_0008855g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 2.0e-163 579.7 460 64.1
Lsat_1_v5_gn_9_105061 Lactuca sativa HOM05D005800 ORTHO05D007636 7.6e-163 577.8 466 61.6
Cc05_g03680 Coffea canephora HOM05D005800 ORTHO05D007636 6.4e-162 574.7 452 63.3
AUR62017573 Chenopodium quinoa HOM05D005800 ORTHO05D007636 8.4e-162 574.3 464 63.1
Sopen07g025360 Solanum pennellii HOM05D005800 ORTHO05D007636 8.4e-162 574.3 445 65.6
EL10Ac9g22808 Beta vulgaris HOM05D005800 ORTHO05D007636 5.4e-161 571.6 420 64.3
Nitab4.5_0000130g0280 Nicotiana tabacum HOM05D005800 ORTHO05D007636 2.7e-160 569.3 460 62.8
Migut.F00824 Erythranthe guttata HOM05D005800 ORTHO05D007636 1.8e-159 566.6 459 62.7
Carub.0003s2619 Capsella rubella HOM05D005800 ORTHO05D007636 3.0e-159 565.8 447 65.3
AL3G42200 Arabidopsis lyrata HOM05D005800 ORTHO05D007636 1.9e-158 563.1 446 65.0
FvH4_6g41870 Fragaria vesca HOM05D005800 ORTHO05D007636 5.6e-158 561.6 332 81.3
AT2G04560 Arabidopsis thaliana HOM05D005800 ORTHO05D007636 6.2e-157 558.1 445 64.3
Thhalv10002525m.g Eutrema salsugineum HOM05D005800 ORTHO05D007636 1.4e-156 557.0 446 63.7
Aa31sc76G50 Aethionema arabicum HOM05D005800 ORTHO05D007636 4.0e-156 555.4 444 62.8
BcaB06g26821 Brassica carinata HOM05D005800 ORTHO05D007636 4.0e-156 555.4 446 64.1
Nitab4.5_0004549g0020 Nicotiana tabacum HOM05D005800 ORTHO05D007636 2.0e-155 553.1 433 64.9
Hund24186 Selenicereus undatus HOM05D005800 ORTHO05D007636 2.0e-155 553.1 475 58.7
Aqoxy6G02415 Aquilegia oxysepala HOM05D005800 ORTHO05D007636 5.8e-155 551.6 438 63.9
ECA240G1426 Erigeron canadensis HOM05D005800 ORTHO05D007636 4.9e-154 548.5 470 58.1
Dinv39765 Davidia involucrata HOM05D005800 ORTHO05D007636 1.1e-153 547.4 461 62.5
Dinv39768 Davidia involucrata HOM05D005800 ORTHO05D007636 1.1e-153 547.4 399 68.7
SGA_v2.0_scaffold90G27705 Striga asiatica HOM05D005800 ORTHO05D007636 1.9e-153 546.6 444 63.7
Oeu012678.1 Olea europaea HOM05D005800 ORTHO05D007636 2.5e-153 546.2 414 66.2
BcaC06g35880 Brassica carinata HOM05D005800 ORTHO05D007636 7.9e-152 541.2 445 62.5
Cpa.g.sc132.41 Carica papaya HOM05D005800 ORTHO05D007636 3.9e-151 538.9 447 62.6
BolC7t41459H Brassica oleracea HOM05D005800 ORTHO05D007636 1.9e-150 536.6 446 62.3
RcHm_v2.0_Chr2g0157701 Rosa chinensis HOM05D005800 ORTHO05D007636 2.5e-150 536.2 316 82.3
C07p10140 Brassica napus HOM05D005800 ORTHO05D007636 4.3e-150 535.4 446 62.6
A07p06670 Brassica napus HOM05D005800 ORTHO05D007636 6.2e-149 531.6 435 63.7
BraA07t28458Z Brassica rapa HOM05D005800 ORTHO05D007636 4.5e-147 525.4 474 59.1
MELO3C019719.2 Cucumis melo HOM05D005800 ORTHO05D007636 2.5e-145 519.6 508 55.1
ATR1128G089 Amborella trichopoda HOM05D005800 ORTHO05D007636 3.2e-145 519.2 425 60.5
Gohir.A07G188100 Gossypium hirsutum HOM05D005800 ORTHO05D007636 1.0e-143 514.2 359 71.3
Rhsim04G0047300 Rhododendron simsii HOM05D005800 ORTHO05D007636 9.0e-140 501.1 472 56.6
Zm00001eb153480 Zea mays HOM05D005800 ORTHO05D007636 3.4e-139 499.2 456 54.6
Os01g0752600 Oryza sativa ssp. japonica HOM05D005800 ORTHO05D007636 9.7e-134 481.1 433 55.7
Rhsim04G0046900 Rhododendron simsii HOM05D005800 ORTHO05D007636 1.4e-132 477.2 452 57.7
SEGI_21918 Sequoiadendron giganteum HOM05D005800 ORTHO05D007636 1.4e-132 477.2 431 57.3
HPP92_010001 Vanilla planifolia HOM05D005800 ORTHO05D007636 4.1e-132 475.7 460 52.8
Lalb_Chr07g0194251 Lupinus albus HOM05D005800 ORTHO05D007636 1.8e-124 450.3 320 68.1
DCAR_021128 Daucus carota HOM05D005800 ORTHO05D007636 3.8e-122 442.6 348 63.8
Dinv39767 Davidia involucrata HOM05D005800 ORTHO05D007636 1.9e-121 440.3 384 62.0
Eucgr.K00731 Eucalyptus grandis HOM05D005800 ORTHO05D007636 6.3e-117 425.2 332 64.2
Pp3c10_3220 Physcomitrium patens HOM05D005800 ORTHO05D007636 9.1e-116 421.4 458 46.9
CAN.G290.4 Capsicum annuum HOM05D005800 ORTHO05D007636 6.1e-112 408.7 330 62.1
MSTRG.9018 Avicennia marina HOM05D005800 ORTHO05D007636 2.6e-110 403.3 310 62.3
AagrBONN_evm.TU.Sc2ySwM_228.127 Anthoceros agrestis HOM05D005800 ORTHO05D007636 4.4e-110 402.5 360 54.4
HanXRQChr14g0429261 Helianthus annuus HOM05D005800 ORTHO05D007636 8.5e-106 388.3 313 61.0
CARHR102490 Cardamine hirsuta HOM05D005800 ORTHO05D007636 4.7e-104 382.5 315 61.9
SMO356G0467 Selaginella moellendorffii HOM05D005800 ORTHO05D007636 1.0e-103 381.3 365 47.9
CDE04G1587 Ceratophyllum demersum HOM05D005800 ORTHO05D007636 4.0e-103 379.4 445 47.9
Sp3g23350 Schrenkiella parvula HOM05D005800 ORTHO05D007636 6.3e-101 372.1 318 59.4
FAN02G2441 Fragaria x ananassa HOM05D005800 ORTHO05D007636 1.1e-100 371.3 240 76.7
Pp3c10_3060 Physcomitrium patens HOM05D005800 ORTHO05D007636 2.5e-97 360.1 425 45.2
Rhsim04G0049100 Rhododendron simsii HOM05D005800 ORTHO05D007636 2.0e-94 350.5 394 50.8
TAR629G1527 Trochodendron aralioides HOM05D005800 ORTHO05D007636 1.7e-93 347.4 254 69.3
MD17G1108300 Malus domestica HOM05D005800 ORTHO05D007636 1.4e-92 344.4 350 56.6
TAR629G2547 Trochodendron aralioides HOM05D005800 ORTHO05D007636 2.9e-77 293.5 216 66.7
Psat0s3432g0080 Pisum sativum HOM05D005800 ORTHO05D007636 1.0e-74 285.0 219 63.0
HPP92_015259 Vanilla planifolia HOM05D005800 ORTHO05D007636 6.8e-71 272.3 464 38.1
Psat4g200480 Pisum sativum HOM05D005800 ORTHO05D007636 2.1e-67 260.8 174 67.8
MBI15_g22711_MAGBIO Magnolia biondii HOM05D005800 ORTHO05D007636 5.8e-62 242.7 222 55.9
RcHm_v2.0_Chr2g0157711 Rosa chinensis HOM05D005800 ORTHO05D007636 1.3e-61 241.5 151 81.5
unitig_46.g18724 Utricularia gibba HOM05D005800 ORTHO05D007636 3.1e-55 220.3 211 54.5
Mapoly0007s0032 Marchantia polymorpha HOM05D005800 ORTHO05D007636 4.9e-45 186.4 231 42.9
HPP92_010007 Vanilla planifolia HOM05D005800 ORTHO05D007636 1.9e-44 184.5 176 51.7
Hma1.2p1_0445F.1_g154140 Hydrangea macrophylla HOM05D000101 ORTHO05D000089 2.4e-44 184.1 135 67.4
Lalb_Chr07g0194261 Lupinus albus HOM05D005800 ORTHO05D007636 6.9e-39 166.0 142 61.3
Psat4g200520 Pisum sativum HOM05D010125 ORTHO05D007636 3.4e-38 163.7 137 61.3
Psat4g200320 Pisum sativum HOM05D005800 ORTHO05D007636 4.8e-32 143.3 132 56.8
HanXRQChr14g0429271 Helianthus annuus HOM05D005800 ORTHO05D007636 1.0e-29 135.6 103 66.0
Pp3c17_14860 Physcomitrium patens HOM05D005800 ORTHO05D026664 1.3e-26 125.2 396 27.8
PRCOL_00005284 Prasinoderma coloniale HOM05D001546 ORTHO05D002908 4.3e-25 120.2 371 26.4
Mapoly0062s0088 Marchantia polymorpha HOM05D005800 ORTHO05D026664 1.6e-24 118.2 399 25.3
CBR_g34007 Chara braunii HOM05D005800 ORTHO05D007636 5.9e-22 109.8 105 48.6
unitig_46.g18725 Utricularia gibba HOM05D005800 ORTHO05D007636 3.3e-17 94.0 137 44.5
ATR1128G087 Amborella trichopoda HOM05D005800 ORTHO05D007636 4.3e-17 93.6 72 62.5
COL.COLO4_04206 Corchorus olitorius HOM05D005800 ORTHO05D007636 8.2e-16 89.4 79 59.5
AagrBONN_evm.TU.Sc2ySwM_344.931 Anthoceros agrestis HOM05D005800 ORTHO05D026664 1.7e-13 81.6 396 22.7
COL.COLO4_04205 Corchorus olitorius HOM05D005800 ORTHO05D007636 8.2e-08 62.8 40 75.0


User provided reference genes

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