Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 4.3e-195 684.5 334 100.0
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 2.1e-136 489.6 341 74.5
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 1.1e-113 414.1 360 64.7
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 1.9e-102 376.7 382 58.4
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 8.2e-101 371.3 393 56.7
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 6.7e-87 325.1 350 52.9
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 9.7e-78 294.7 334 52.1
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 2.4e-76 290.0 325 50.8
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 5.3e-76 288.9 361 50.4
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 4.5e-75 285.8 333 50.8
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 3.7e-69 266.2 325 47.4
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 1.0e-66 258.1 325 45.5
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 2.9e-66 256.5 296 52.0
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 1.5e-65 254.2 304 49.7
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 2.7e-64 250.0 285 50.2
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 8.8e-63 245.0 327 43.1
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 4.4e-62 242.7 326 45.4
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 4.1e-60 236.1 267 49.1
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 1.6e-59 234.2 328 43.9
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 1.7e-58 230.7 335 42.4
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 2.9e-58 229.9 313 45.0
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 1.1e-57 228.0 340 43.2
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 3.2e-57 226.5 255 52.9
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 2.7e-56 223.4 327 42.5
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 2.3e-55 220.3 237 51.1
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 3.0e-55 219.9 316 41.5
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 3.0e-55 219.9 277 49.8
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 2.0e-54 217.2 335 41.2
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 2.2e-53 213.8 252 50.0
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 6.3e-53 212.2 328 42.1
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 4.1e-52 209.5 329 38.9
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 4.1e-52 209.5 287 43.9
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 7.0e-52 208.8 323 41.2
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 7.0e-52 208.8 323 41.2
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 2.7e-51 206.8 316 41.8
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 2.7e-51 206.8 398 36.4
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 4.5e-51 206.1 336 38.7
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 2.9e-50 203.4 251 50.6
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 1.5e-49 201.1 304 40.1
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 1.9e-49 200.7 235 48.9
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 2.5e-49 200.3 281 41.3
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 2.5e-49 200.3 311 40.2
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 5.5e-49 199.1 343 39.4
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 1.6e-48 197.6 318 41.2
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 1.6e-48 197.6 319 41.4
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 3.0e-47 193.4 326 39.6
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 8.9e-47 191.8 334 38.9
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 1.3e-45 188.0 351 37.6
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 6.1e-40 169.1 321 38.6
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 1.0e-39 168.3 234 42.3
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 5.2e-39 166.0 326 37.7
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 3.4e-38 163.3 329 37.1
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 8.3e-37 158.7 340 35.0
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 1.7e-34 151.0 281 37.7
Duzib116G0777 Durio zibethinus HOM05D008124 ORTHO05D004072 7.3e-33 145.6 201 44.3
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 8.0e-32 142.1 205 39.5
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 1.1e-28 131.7 137 46.7
Gohir.A06G110400 Gossypium hirsutum HOM05D008124 ORTHO05D004072 1.4e-28 131.3 200 38.0
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 7.0e-28 129.0 223 35.4
PSO170G6446 Papaver somniferum HOM05D008124 ORTHO05D004072 2.7e-27 127.1 185 38.9
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 6.2e-24 115.9 162 36.4
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 8.1e-24 115.5 158 39.9
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 1.4e-23 114.8 161 40.4
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 6.4e-21 105.9 159 36.5
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 4.6e-19 99.8 78 62.8
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 4.6e-19 99.8 78 62.8
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.0e-18 98.6 164 35.4
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.7e-18 97.8 164 35.4
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.3e-18 97.4 164 34.8
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 5.1e-18 96.3 147 38.1
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 6.6e-18 95.9 164 34.8
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 1.2e-16 91.7 158 31.0
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 1.6e-16 91.3 169 35.5
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 1.6e-16 91.3 174 32.8
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 2.1e-16 90.9 159 31.4
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 2.8e-16 90.5 162 33.3
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 4.7e-16 89.7 170 34.1
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 1.8e-15 87.8 193 31.1
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 4.0e-15 86.7 186 32.3
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 4.0e-15 86.7 159 32.7
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 5.2e-15 86.3 157 31.8
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 8.9e-15 85.5 168 32.1
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 2.0e-14 84.3 87 47.1
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 2.0e-14 84.3 159 30.8
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 2.6e-14 84.0 175 32.0
CSS0002164 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.3e-13 81.6 67 50.7
CSS0011273 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 1.3e-13 81.6 67 50.7
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 4.1e-12 76.6 87 42.5
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 7.1e-12 75.9 160 27.5
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 9.2e-12 75.5 160 27.5
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 1.2e-11 75.1 91 36.3
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 1.6e-11 74.7 163 31.9
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 1.6e-11 74.7 159 27.0
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 2.1e-11 74.3 168 28.0
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 2.7e-11 73.9 163 27.0
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 1.7e-10 71.2 230 30.4
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 3.0e-10 70.5 56 50.0
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 6.6e-10 69.3 87 43.7
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 6.6e-10 69.3 87 43.7
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 1.5e-09 68.2 51 51.0
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 1.5e-09 68.2 157 29.3
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 1.9e-09 67.8 157 28.7
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 3.3e-09 67.0 55 49.1
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 3.3e-09 67.0 176 26.7
PRCOL_00006794 Prasinoderma coloniale HOM05D008124 ORTHO05D004072 3.3e-09 67.0 203 27.6
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 5.6e-09 66.2 55 49.1
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 7.3e-09 65.9 87 42.5
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 7.3e-09 65.9 193 25.9
Gorai.010G143700 Gossypium raimondii HOM05D008124 ORTHO05D004072 7.3e-09 65.9 41 68.3
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 1.2e-08 65.1 144 27.8
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 1.6e-08 64.7 50 50.0
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 2.8e-08 63.9 41 58.5
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 4.7e-08 63.2 55 47.3
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 4.7e-08 63.2 55 47.3
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 4.7e-08 63.2 46 54.3
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 6.2e-08 62.8 94 37.2
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 6.2e-08 62.8 94 37.2
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 1.1e-07 62.0 240 27.9
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 1.4e-07 61.6 58 39.7
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 1.8e-07 61.2 87 42.5
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 1.8e-07 61.2 84 33.3
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 2.4e-07 60.8 48 52.1
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 2.4e-07 60.8 48 52.1
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 2.4e-07 60.8 164 24.4
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 2.4e-07 60.8 161 29.2
SEGI_07514 Sequoiadendron giganteum HOM05D008124 ORTHO05D004072 3.1e-07 60.5 70 37.1
C02p63020 Brassica napus HOM05D002182 ORTHO05D017531 4.0e-07 60.1 129 33.3
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 5.2e-07 59.7 58 46.6
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 5.2e-07 59.7 131 29.0
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 5.2e-07 59.7 159 27.0
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 6.9e-07 59.3 125 29.6
Haze_16000 Corylus avellana HOM05D013106 ORTHO05D017812 1.2e-06 58.5 159 28.3
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 1.2e-06 58.5 107 35.5
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 1.5e-06 58.2 113 35.4
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 2.0e-06 57.8 131 35.9
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 2.0e-06 57.8 109 34.9
Gohir.A07G168700 Gossypium hirsutum HOM05D018961 ORTHO05D004072 2.6e-06 57.4 157 27.4
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 2.6e-06 57.4 210 24.8
VMungo1309G0220 Vigna mungo HOM05D002182 ORTHO05D004671 2.6e-06 57.4 110 34.5
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 3.4e-06 57.0 135 26.7
Glyma.06G155600 Glycine max HOM05D002182 ORTHO05D004671 4.4e-06 56.6 110 34.5
Phvul.009G154850 Phaseolus vulgaris HOM05D002182 ORTHO05D004671 4.4e-06 56.6 110 34.5
BcaC03g18232 Brassica carinata HOM05D002182 ORTHO05D004671 5.8e-06 56.2 121 33.1
Hma1.2p1_0224F.1_g094550 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 5.8e-06 56.2 46 50.0
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 5.8e-06 56.2 54 40.7
arahy.Tifrunner.gnm1.ann1.XVSB6Y Arachis hypogaea HOM05D002182 ORTHO05D004671 7.6e-06 55.8 105 34.3
Hma1.2p1_2569F.1_g324543 Hydrangea macrophylla HOM05D001383 ORTHO05D000309 7.6e-06 55.8 56 51.8
Ca_16979_v3 Cicer arietinum L. HOM05D002182 ORTHO05D004671 9.9e-06 55.5 118 33.9


User provided reference genes

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