Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 0.0e+00 1714.1 1377 100.0
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 0.0e+00 1186.8 1379 72.2
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 0.0e+00 1155.2 1382 71.4
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 7.6e-296 1021.1 1378 67.5
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 7.9e-285 984.6 1381 66.6
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.4e-278 963.8 1381 66.5
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 1.3e-274 950.7 1381 67.1
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 8.2e-266 921.4 1394 65.6
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 9.8e-259 897.9 1382 54.1
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 5.9e-248 862.1 1394 65.2
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 5.9e-248 862.1 1394 65.2
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 3.7e-234 816.2 1380 55.7
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 3.1e-228 796.6 1382 57.0
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 1.6e-224 784.3 1343 55.4
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 4.6e-224 782.7 1533 45.5
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 4.7e-221 772.7 1383 56.8
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.8e-220 770.8 1380 54.3
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 1.5e-219 767.7 1380 55.1
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 6.0e-216 755.7 1465 50.8
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 7.8e-216 755.4 1309 54.6
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 8.7e-215 751.9 1383 52.7
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 4.3e-214 749.6 1383 52.4
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 4.3e-214 749.6 1436 51.8
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 7.3e-214 748.8 1383 52.3
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 2.6e-211 740.3 1382 49.2
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 4.4e-211 739.6 1380 48.3
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 8.4e-210 735.3 1114 52.5
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 1.6e-200 704.5 1386 52.0
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 2.4e-196 690.6 1383 54.4
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 9.3e-193 678.7 1584 46.3
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 5.3e-188 662.9 1380 52.2
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 4.5e-187 659.8 1385 51.6
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 3.2e-185 653.7 1380 50.7
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 1.0e-183 648.7 1569 44.4
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 3.7e-181 640.2 1579 42.9
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 4.8e-181 639.8 1379 48.8
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 6.3e-181 639.4 1376 53.1
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.1e-180 637.1 1385 46.8
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 2.6e-179 634.0 1382 54.5
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 3.4e-179 633.6 1379 48.4
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 5.0e-178 629.8 1382 47.9
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 1.2e-176 625.2 1380 50.0
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 8.8e-175 619.0 1380 49.8
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 1.5e-174 618.2 1382 53.5
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 1.0e-170 605.5 1412 47.7
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.7e-170 604.7 1376 50.1
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 2.2e-170 604.4 1581 39.9
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.9e-169 601.3 1376 50.3
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 3.2e-169 600.5 1379 46.2
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 8.8e-167 592.4 1384 49.2
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 9.7e-166 589.0 1574 42.4
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 3.5e-163 580.5 1347 45.2
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 1.1e-161 575.5 1381 46.9
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 1.1e-161 575.5 1661 35.5
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 1.2e-160 572.0 1408 43.7
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 3.9e-159 567.0 1363 46.1
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 2.2e-157 561.2 1380 47.1
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 3.1e-156 557.4 1380 43.5
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 8.0e-152 542.7 623 56.7
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 1.4e-151 542.0 1605 40.2
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 7.5e-150 536.2 1381 42.4
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 1.1e-148 532.3 1386 44.4
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 9.1e-148 529.3 1574 41.4
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 2.2e-146 524.6 1573 40.9
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 8.5e-146 522.7 1385 49.3
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 8.0e-144 516.2 1380 45.1
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 2.6e-142 511.1 1379 46.0
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 2.6e-142 511.1 1572 41.8
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.0e-135 489.2 1439 39.3
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 1.8e-135 488.4 621 53.6
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 6.8e-135 486.5 1108 37.6
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 3.4e-134 484.2 1141 50.3
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.0e-130 472.6 1378 44.1
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 1.7e-130 471.9 1382 47.8
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 6.6e-130 469.9 1391 47.4
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.1e-129 469.2 1378 44.5
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 6.1e-128 463.4 1379 40.8
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 1.4e-127 462.2 1448 44.2
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 4.0e-127 460.7 1382 43.0
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 2.6e-126 458.0 770 42.6
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 2.3e-122 444.9 1382 44.6
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 2.8e-120 438.0 1381 42.9
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 1.1e-119 436.0 1390 34.9
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 4.0e-119 434.1 1382 42.9
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 2.9e-117 427.9 1189 39.5
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 3.0e-114 417.9 1381 46.9
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 2.1e-112 411.8 1382 41.4
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 8.1e-104 383.3 1443 32.7
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 8.1e-96 356.7 780 54.1
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 6.0e-83 313.9 1382 39.9
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 2.1e-80 305.4 1959 27.4
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 1.4e-79 302.8 1445 35.8
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.1e-71 276.6 918 33.9
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 9.0e-71 273.5 1352 28.4
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 5.8e-70 270.8 613 40.0
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 2.2e-69 268.9 416 46.6
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 7.1e-68 263.8 1379 37.9
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 4.1e-63 248.1 603 35.5
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 3.2e-60 238.4 1389 42.3
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 7.2e-60 237.3 348 46.3
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 3.0e-58 231.9 582 41.2
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 8.8e-58 230.3 616 37.2
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.1e-55 223.4 417 40.0
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 3.1e-55 221.9 1381 40.3
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 3.1e-55 221.9 1393 35.2
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 2.6e-54 218.8 607 35.7
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.6e-51 209.5 385 39.7
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 1.4e-50 206.5 270 56.7
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 3.9e-50 204.9 583 38.9
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 6.7e-50 204.1 1156 33.2
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 3.7e-48 198.4 1247 34.7
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 2.6e-46 192.2 546 33.2
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 1.3e-45 189.9 574 38.3
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 3.8e-45 188.3 1382 40.8
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 2.5e-44 185.7 288 46.2
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 1.2e-43 183.3 346 44.2
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 6.7e-42 177.6 1173 34.4
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 4.4e-41 174.9 382 52.9
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 3.1e-39 168.7 618 29.6
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 5.3e-39 167.9 249 52.6
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 7.0e-39 167.5 461 37.5
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 4.5e-38 164.9 329 42.2
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 6.5e-37 161.0 618 33.8
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 1.9e-36 159.5 366 37.7
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 5.5e-36 157.9 618 38.0
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 1.0e-34 153.7 351 41.0
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 1.2e-33 150.2 365 35.6
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 7.5e-33 147.5 393 33.8
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 2.2e-32 146.0 411 34.3
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.4e-31 143.3 421 36.8
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.4e-31 143.3 421 36.8
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 1.6e-30 139.8 250 41.2
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 2.0e-30 139.4 115 73.0
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 4.5e-30 138.3 1238 34.5
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 1.3e-29 136.7 355 39.4
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 5.0e-29 134.8 566 31.6
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 5.0e-29 134.8 347 39.5
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 5.0e-29 134.8 347 39.5
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 6.5e-29 134.4 421 36.1
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 2.5e-28 132.5 833 29.8
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 6.3e-24 117.9 395 37.0
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 1.2e-22 113.6 610 25.7
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 3.5e-22 112.1 439 28.9
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.0e-21 110.5 1383 29.3
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 3.8e-21 108.6 1471 37.5
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.8e-19 102.4 154 57.8
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 8.0e-19 100.9 355 39.7
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 3.0e-18 99.0 192 39.1
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 3.0e-18 99.0 192 39.1
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 8.9e-18 97.4 343 32.1
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 1.5e-17 96.7 173 37.6
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 1.5e-17 96.7 119 52.1
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 4.4e-17 95.1 357 25.8
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 7.5e-17 94.4 1471 37.5
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 9.8e-17 94.0 338 34.6
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 1.3e-16 93.6 334 32.9
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 2.9e-16 92.4 604 26.3
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 6.4e-16 91.3 705 24.1
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 5.4e-15 88.2 481 26.6
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 2.7e-14 85.9 309 33.7
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 5.9e-14 84.7 425 24.0
HPP92_027643 Vanilla planifolia HOM05D003806 ORTHO05D004346 1.0e-13 84.0 174 34.5
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 1.5e-12 80.1 141 39.7
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 4.7e-11 75.1 89 49.4
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 1.8e-10 73.2 284 28.5
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 4.4e-09 68.6 56 62.5
Zm00001eb430870 Zea mays HOM05D003806 ORTHO05D004346 7.5e-09 67.8 86 44.2
Nn7g36612 Nelumbo nucifera HOM05D002721 ORTHO05D002919 9.8e-09 67.4 372 23.1
SEGI_03911 Sequoiadendron giganteum HOM05D003806 ORTHO05D002919 9.8e-09 67.4 242 28.1
Oeu016857.1 Olea europaea HOM05D003806 ORTHO05D004346 1.2e-06 60.5 43 69.8


User provided reference genes

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