Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 4.7e-205 717.6 355 100.0
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 1.2e-187 659.8 353 91.8
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 3.4e-187 658.3 355 91.3
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 3.3e-182 641.7 353 89.0
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 3.4e-179 631.7 353 87.8
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.4e-179 631.7 353 87.8
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.7e-178 628.2 353 87.3
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.9e-169 599.4 350 84.3
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 2.7e-168 595.5 346 84.4
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 7.8e-168 594.0 355 82.8
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 7.8e-168 594.0 347 83.6
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 1.0e-167 593.6 355 82.8
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.7e-167 592.8 347 85.0
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 6.6e-167 590.9 348 83.0
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 7.3e-166 587.4 347 82.7
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 6.2e-165 584.3 347 83.0
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 8.0e-165 583.9 353 82.4
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 1.1e-164 583.6 348 82.8
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 2.3e-164 582.4 353 82.2
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 6.8e-164 580.9 353 80.7
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 2.4e-161 572.4 355 80.0
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 2.4e-161 572.4 347 81.0
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 4.1e-161 571.6 344 82.3
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 7.0e-161 570.9 346 79.8
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.6e-160 569.7 352 79.0
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 2.1e-160 569.3 346 79.5
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.3e-159 566.6 356 77.8
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 2.3e-159 565.8 349 81.1
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 1.4e-156 556.6 346 78.6
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 1.2e-155 553.5 348 78.7
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 2.0e-155 552.7 348 78.4
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 4.4e-155 551.6 328 83.5
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 9.9e-155 550.4 332 81.6
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 2.2e-154 549.3 368 75.3
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 2.9e-154 548.9 335 80.6
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.1e-153 547.0 378 73.3
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.4e-153 546.6 351 76.9
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 1.9e-153 546.2 350 77.1
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 9.2e-153 543.9 347 78.4
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.6e-152 543.1 355 75.5
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 1.0e-151 540.4 349 77.4
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 3.9e-151 538.5 353 76.5
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 5.1e-151 538.1 347 76.1
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.1e-150 537.0 349 76.2
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.5e-150 536.6 360 73.1
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 1.9e-150 536.2 351 73.8
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 3.3e-150 535.4 366 72.7
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 4.3e-150 535.0 349 75.4
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 7.3e-150 534.3 358 74.6
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 9.5e-150 533.9 351 73.2
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.6e-149 531.9 359 73.3
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 8.1e-149 530.8 358 72.3
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 8.1e-149 530.8 350 75.1
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 1.1e-148 530.4 356 71.9
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.4e-148 529.3 350 76.0
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 4.0e-148 528.5 353 73.4
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 6.8e-148 527.7 327 78.6
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 8.9e-148 527.3 357 73.9
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 8.9e-148 527.3 350 75.1
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.5e-147 526.6 348 75.9
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 1.5e-147 526.6 347 74.1
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 3.4e-147 525.4 378 70.1
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.7e-146 523.1 350 73.7
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 2.9e-146 522.3 351 75.2
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 4.9e-146 521.5 347 74.4
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 1.4e-145 520.0 313 82.1
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 4.2e-145 518.5 354 74.6
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.2e-144 516.9 346 74.3
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 3.5e-144 515.4 331 76.4
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.0e-143 513.8 360 71.9
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.7e-143 513.1 353 73.7
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 6.6e-143 511.1 351 73.5
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 1.1e-142 510.4 349 71.9
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 1.5e-142 510.0 352 73.0
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 2.5e-142 509.2 322 77.0
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 2.5e-142 509.2 333 74.5
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 3.3e-142 508.8 327 75.5
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.8e-141 505.8 405 65.9
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 6.9e-140 501.1 326 76.4
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 1.5e-139 500.0 354 70.9
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 5.8e-139 498.0 333 72.7
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 7.6e-139 497.7 328 74.4
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 4.2e-137 491.9 353 70.0
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 5.4e-137 491.5 331 71.0
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 9.3e-137 490.7 361 68.1
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 1.2e-136 490.3 328 72.9
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.1e-136 489.6 334 72.2
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.7e-135 486.5 327 73.7
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 3.0e-135 485.7 327 73.1
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 6.6e-135 484.6 324 73.5
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.5e-134 483.4 323 72.1
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 1.5e-134 483.4 329 71.4
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.5e-134 483.4 340 70.0
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 3.3e-134 482.3 351 69.8
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 4.3e-134 481.9 324 73.1
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 5.6e-134 481.5 318 73.6
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 7.3e-134 481.1 324 73.1
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 9.6e-134 480.7 329 73.6
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 9.6e-134 480.7 323 72.4
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 9.6e-134 480.7 349 70.8
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.3e-133 480.3 344 70.1
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 2.1e-133 479.6 318 73.3
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 3.6e-133 478.8 343 72.3
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 3.6e-133 478.8 322 73.3
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 8.1e-133 477.6 323 72.4
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 8.1e-133 477.6 328 72.3
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.8e-132 476.5 324 72.2
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 2.4e-132 476.1 324 72.2
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 2.4e-132 476.1 363 67.8
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 2.4e-132 476.1 348 69.5
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 3.1e-132 475.7 323 72.1
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.2e-131 473.8 342 70.2
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 1.5e-131 473.4 341 71.0
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 2.9e-130 469.2 324 69.1
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 3.8e-130 468.8 362 65.5
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 6.4e-130 468.0 347 68.9
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 9.3e-129 464.2 306 74.8
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 2.7e-128 462.6 307 74.6
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 1.3e-127 460.3 358 64.0
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 1.9e-126 456.4 327 69.7
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 2.5e-126 456.1 271 82.3
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.3e-125 453.8 274 82.8
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.1e-125 453.0 307 73.3
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 3.7e-125 452.2 335 67.5
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 8.1e-125 451.1 318 68.6
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 2.4e-124 449.5 328 70.1
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 1.6e-120 436.8 350 65.1
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 6.7e-119 431.4 525 47.2
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 1.9e-118 429.9 284 77.8
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 1.0e-114 417.5 265 78.5
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 4.5e-107 392.1 325 63.7
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.2e-99 367.5 351 55.3
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 9.4e-97 357.8 333 55.3
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 6.7e-95 351.7 227 75.8
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 3.3e-94 349.4 242 69.8
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 5.9e-91 338.6 206 81.6
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 7.7e-91 338.2 229 73.8
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.9e-89 333.6 280 62.9
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.8e-84 317.0 206 76.7
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 2.4e-84 316.6 290 55.5
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 2.0e-83 313.5 230 70.9
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 6.5e-82 308.5 267 61.0
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 6.1e-80 302.0 188 78.7
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 4.5e-75 285.8 162 87.0
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 2.9e-66 256.5 372 41.7
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.5e-65 254.2 187 68.4
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 6.3e-61 238.8 187 66.8
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 2.0e-59 233.8 212 58.5
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 5.9e-59 232.3 166 69.9
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.0e-58 231.5 164 68.9
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 4.0e-55 219.5 143 73.4
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 4.4e-54 216.1 269 47.2
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 3.1e-47 193.4 193 54.9
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 1.2e-46 191.4 336 39.0
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 5.2e-39 166.0 116 74.1
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 2.4e-31 140.6 126 54.0
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 4.6e-27 126.3 289 35.6
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 1.1e-25 121.7 251 33.1
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 1.5e-25 121.3 377 31.6
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 5.6e-25 119.4 71 83.1
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 1.5e-22 111.3 68 75.0
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 1.9e-20 104.4 214 36.4
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 4.6e-19 99.8 96 56.2
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 4.6e-19 99.8 64 70.3
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.5e-17 94.7 60 80.0
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 7.3e-17 92.4 56 78.6
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 9.9e-14 82.0 77 48.1
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 3.0e-10 70.5 49 65.3
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 1.1e-07 62.0 59 52.5
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 4.0e-07 60.1 57 56.1


User provided reference genes

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