Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 3493.4 1875 100.0
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 3028.8 1882 85.9
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2726.4 1906 77.5
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2690.2 1901 77.0
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2660.2 1905 75.9
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2658.6 1885 77.8
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2647.5 1887 78.2
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2640.5 1900 75.9
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2631.7 1895 76.3
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2614.0 1905 74.4
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2614.0 1895 75.5
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2598.9 1895 73.8
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2596.6 1894 73.6
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2590.1 1894 72.3
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 2585.8 1889 76.9
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2584.3 1894 73.5
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2575.0 1891 73.2
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2574.3 1887 76.7
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2572.0 1895 73.0
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2566.6 1893 76.4
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2564.3 1894 73.8
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2560.0 1903 73.2
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2560.0 1897 73.0
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2557.7 1884 74.4
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2557.3 1882 73.8
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2551.5 1884 74.3
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2543.5 1913 70.5
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2540.4 1893 76.1
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2521.9 1890 71.3
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2511.5 1911 71.4
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2504.9 2105 66.3
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2501.9 1931 71.0
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2497.6 1908 71.5
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2496.1 1896 71.6
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 2486.1 2096 68.6
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2481.4 1899 71.2
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2477.2 1892 70.9
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2476.0 1896 71.1
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2475.3 1988 70.2
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2473.4 1897 71.2
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2468.7 1896 72.7
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2468.3 1893 70.9
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2450.6 1736 77.1
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2438.3 1934 71.4
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2411.3 1898 71.3
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2397.5 1704 74.9
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2393.2 1890 69.3
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2391.7 1892 68.9
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2375.9 2234 61.4
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2350.9 1897 67.5
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2342.8 1961 66.7
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2336.2 1891 67.7
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2335.8 1893 67.0
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2329.7 1880 67.6
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2323.5 1892 67.0
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2311.2 1900 68.4
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2304.2 1900 68.3
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2299.2 1737 72.7
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2286.9 1901 67.0
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2273.0 1872 67.7
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2270.7 1884 66.7
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2270.0 1854 66.7
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2268.0 1891 67.1
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2267.3 1898 66.2
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2266.9 1879 67.4
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2222.6 1892 64.3
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 2216.4 1891 65.8
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 2215.7 1891 65.7
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2203.3 1886 65.6
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2198.7 1791 68.1
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 2193.7 1893 66.1
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2181.0 1869 64.8
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2176.4 1781 67.3
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 2171.7 1882 65.2
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 2169.4 1885 65.3
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2165.6 1895 66.4
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 2161.0 1886 65.0
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 2154.4 1926 64.2
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 2152.9 1879 65.4
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 2152.9 1862 65.6
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 2149.4 1878 65.0
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 2134.0 1991 62.3
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2130.9 1933 62.5
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 2102.0 1977 59.7
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 2085.1 1896 61.9
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 2052.7 1893 62.9
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1997.6 1380 74.4
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1991.5 1515 72.3
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1893.6 1509 69.6
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1853.2 1858 57.6
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1819.7 2004 55.7
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1740.7 1991 53.4
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1669.1 1811 53.9
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1625.1 1891 52.6
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1564.7 1884 52.3
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1535.8 1222 73.2
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1497.3 986 77.9
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1416.0 1272 63.7
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1400.6 1296 63.4
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1393.3 1111 69.0
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1340.5 1483 54.8
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1294.3 1220 61.1
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 0.0e+00 1207.2 853 72.1
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 0.0e+00 1204.9 1096 67.2
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1138.3 941 66.1
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 7.0e-308 1061.6 1280 47.1
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 2.1e-296 1023.5 673 77.3
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 3.3e-294 1016.1 1149 56.0
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 1.4e-279 967.6 706 72.8
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 4.3e-257 892.9 857 64.9
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 3.0e-218 763.8 1324 37.8
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 8.7e-218 762.3 972 52.6
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 7.6e-214 749.2 1132 43.7
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 1.3e-205 721.8 452 83.6
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 3.6e-171 607.4 374 81.8
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 9.5e-156 556.2 1279 32.3
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 3.6e-155 554.3 366 76.5
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 6.4e-144 516.9 367 72.5
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 8.3e-144 516.5 369 71.5
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.3e-115 422.9 496 52.6
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 1.6e-107 396.0 294 70.4
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 3.3e-100 371.7 575 48.2
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 7.9e-94 350.5 299 63.5
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 1.3e-93 349.7 521 52.8
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 3.9e-93 348.2 214 78.0
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.2e-89 336.7 239 73.6
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 5.5e-87 327.8 198 84.3
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 3.0e-85 322.0 262 67.2
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 2.2e-83 315.8 1125 26.6
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 5.5e-79 301.2 1535 25.1
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 7.7e-73 280.8 264 60.2
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 5.9e-65 254.6 170 75.9
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 1.7e-59 236.5 226 60.2
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.1e-58 233.8 500 35.2
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 6.5e-56 224.6 190 65.3
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.7e-54 219.2 235 54.5
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 1.5e-52 213.4 243 52.3
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 7.5e-52 211.1 163 66.3
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.8e-51 209.1 273 52.0
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 8.3e-51 207.6 170 62.4
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 4.3e-47 195.3 417 38.1
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 4.4e-44 185.3 221 52.0
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 2.1e-38 166.4 106 78.3
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 8.9e-37 161.0 89 83.1
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 1.2e-28 134.0 110 68.2
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 9.8e-28 131.0 75 90.7
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.9e-27 129.4 116 65.5
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.1e-26 127.5 113 56.6
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 3.2e-26 125.9 106 67.0
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 4.1e-26 125.6 118 59.3
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 2.1e-25 123.2 87 70.1
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 2.1e-25 123.2 69 91.3
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 1.5e-23 117.1 61 93.4
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 1.8e-21 110.2 75 78.7
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 6.4e-19 101.7 128 50.8
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 1.6e-17 97.1 86 58.1
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 1.6e-17 97.1 107 53.3
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 7.8e-17 94.7 58 79.3
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 7.8e-17 94.7 58 79.3
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 1.0e-16 94.4 82 58.5
FAN07G2130 Fragaria x ananassa HOM05D003986 ORTHO05D004916 2.3e-16 93.2 104 69.2
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 3.0e-16 92.8 67 67.2
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 6.6e-16 91.7 58 77.6
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 2.5e-15 89.7 73 64.4
TAR371G1101 Trochodendron aralioides HOM05D003986 ORTHO05D004916 8.1e-14 84.7 105 50.5
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 8.9e-13 81.3 41 87.8
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 1.2e-12 80.9 83 50.6
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 4.4e-12 79.0 48 75.0
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 4.4e-12 79.0 50 86.0
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 6.4e-11 75.1 75 58.7
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 2.7e-09 69.7 183 36.1
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 4.6e-09 68.9 36 83.3
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 2.1e-06 60.1 59 54.2
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 4.8e-06 58.9 111 32.4


User provided reference genes

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