Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 2560.0 1316 100.0
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1775.0 1339 70.6
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1692.2 1360 67.4
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 0.0e+00 1660.6 1352 66.8
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1640.2 1388 65.1
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1637.9 1350 66.3
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1627.1 1362 64.9
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1622.1 1382 63.7
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1621.7 1488 60.6
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1621.3 1388 64.8
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1613.6 1390 64.3
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1602.0 1360 64.0
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1597.8 1353 64.5
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1597.8 1360 64.3
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1597.4 1353 64.5
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1596.3 1366 63.8
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1588.9 1360 63.2
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1588.9 1353 64.3
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 1568.1 1359 62.5
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1566.6 1348 63.4
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 1544.6 1436 59.9
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1516.9 1365 60.6
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1508.0 1353 60.8
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1471.4 1352 60.6
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 1464.5 1357 59.0
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 1448.3 1356 59.1
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 1446.0 1470 56.8
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1439.1 1362 59.4
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 1432.9 1360 58.0
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1429.5 1347 58.1
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1425.2 1336 57.8
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1423.3 1391 57.9
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1421.0 1330 58.7
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 0.0e+00 1419.4 1354 57.2
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 1408.3 1344 58.4
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 0.0e+00 1402.9 1342 57.5
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1395.2 1347 57.6
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 0.0e+00 1390.6 1414 55.7
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 0.0e+00 1379.4 1345 56.9
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1362.4 1389 57.7
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1354.7 1360 55.8
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 0.0e+00 1349.3 1343 55.0
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1348.6 1349 55.7
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 0.0e+00 1347.0 1396 54.2
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1342.0 1344 56.0
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1338.9 1359 55.0
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1336.6 1361 55.0
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1331.6 1341 55.8
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1330.5 1348 55.6
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1330.1 1343 55.7
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1320.1 1381 54.1
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1315.1 1359 55.4
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 0.0e+00 1305.0 1404 53.1
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 0.0e+00 1293.1 1333 54.6
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 0.0e+00 1286.9 1379 53.9
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1284.6 1339 54.1
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1281.5 1354 53.5
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 0.0e+00 1281.2 1352 54.5
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1272.7 1354 53.5
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1271.1 1367 53.3
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 0.0e+00 1265.4 1359 53.7
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1264.2 1360 52.7
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 0.0e+00 1258.0 1426 51.0
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 0.0e+00 1257.3 1348 53.8
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1256.1 1337 53.4
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 0.0e+00 1250.7 1343 52.9
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1247.3 1348 53.0
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1245.3 1386 52.0
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1238.8 1376 52.5
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 0.0e+00 1238.4 1393 52.1
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1236.9 1358 51.3
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 0.0e+00 1236.5 1351 51.0
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 0.0e+00 1234.9 1367 51.6
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 0.0e+00 1234.6 1341 51.4
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 0.0e+00 1230.3 1349 51.7
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1227.6 1359 50.9
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 0.0e+00 1224.9 1297 53.5
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 0.0e+00 1224.2 1358 51.0
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 0.0e+00 1219.5 1399 50.6
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 0.0e+00 1216.4 1348 51.8
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1211.4 1360 50.7
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1211.4 1360 50.7
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 0.0e+00 1211.4 1360 50.7
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 0.0e+00 1205.7 1360 50.5
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 0.0e+00 1187.6 1341 50.4
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 0.0e+00 1176.0 1356 50.0
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 0.0e+00 1172.1 1074 59.8
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 0.0e+00 1143.6 895 71.1
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 0.0e+00 1134.8 1339 50.9
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1113.2 1261 50.9
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 0.0e+00 1106.7 1372 48.2
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 0.0e+00 1080.1 1353 47.3
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 2.4e-307 1059.3 1356 46.5
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 5.8e-301 1038.1 1095 52.3
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 1.3e-289 1000.3 1292 46.9
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 6.6e-289 998.0 912 61.5
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 6.6e-281 971.5 916 58.7
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 4.1e-254 882.5 798 63.2
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 1.8e-241 840.5 1359 42.2
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 5.3e-238 828.9 839 56.0
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 5.2e-225 785.8 681 62.4
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 2.4e-222 776.9 639 64.5
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 8.5e-220 768.5 779 55.3
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 1.4e-217 761.1 708 59.9
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 7.0e-206 722.2 846 50.5
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 7.3e-195 685.6 480 72.1
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 2.4e-190 670.6 683 55.2
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 6.4e-175 619.4 1287 34.6
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 2.4e-158 564.3 359 78.3
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 3.5e-157 560.5 596 51.8
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.7e-149 534.3 735 43.1
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 1.3e-146 525.4 1323 30.8
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 2.2e-138 498.0 1112 31.8
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 6.9e-137 493.0 1146 32.5
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 3.4e-136 490.7 359 66.0
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 2.9e-135 487.6 1058 34.4
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 6.3e-130 469.9 508 52.2
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.2e-119 434.9 417 51.8
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 7.0e-97 360.1 348 54.0
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.0e-88 332.0 677 35.2
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 6.6e-87 327.0 351 53.0
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 3.6e-85 321.2 326 49.1
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 1.2e-75 289.7 238 61.8
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 9.5e-70 270.0 302 51.7
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 6.0e-64 250.8 351 49.0
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 1.6e-53 216.1 325 41.8
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 4.0e-52 211.5 301 46.8
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 3.8e-50 204.9 228 53.1
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 8.7e-47 193.7 120 78.3
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 4.8e-45 188.0 284 40.5
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 3.4e-43 181.8 256 42.2
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 4.6e-40 171.4 200 51.0
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 3.0e-31 142.1 363 29.5
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 2.1e-29 136.0 507 26.0
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 2.0e-27 129.4 113 61.1
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.6e-24 118.2 166 42.2
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 3.0e-23 115.5 120 52.5
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 2.2e-21 109.4 210 36.7
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 2.8e-21 109.0 450 23.6
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.0e-19 102.8 425 27.1
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 2.1e-16 92.8 452 25.0
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 1.5e-11 76.6 86 51.2
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 2.0e-11 76.3 70 55.7
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 2.5e-09 69.3 66 57.6
SEGI_37730 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.6e-06 59.3 149 28.9
TAR625G0866 Trochodendron aralioides HOM05D005030 ORTHO05D006490 3.3e-06 58.9 45 57.8
MBI19_g06116_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D036548 7.4e-06 57.8 34 79.4


User provided reference genes

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