Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G141600 Prunus persica HOM05D001092 ORTHO05D000923 5.3e-19 96.7 48 100.0
FAN12G2952 Fragaria x ananassa HOM05D001092 ORTHO05D000923 3.8e-09 63.9 41 73.2
COL.COLO4_34529 Corchorus olitorius HOM05D001092 ORTHO05D000923 4.9e-09 63.5 39 82.1
FAN17G2279 Fragaria x ananassa HOM05D001092 ORTHO05D000923 4.9e-09 63.5 41 73.2
Prupe.1G110200 Prunus persica HOM05D001092 ORTHO05D000923 4.9e-09 63.5 39 84.6
Sed0011983 Sechium edule HOM05D001092 ORTHO05D000923 4.9e-09 63.5 39 82.1
Eucgr.H04089 Eucalyptus grandis HOM05D001092 ORTHO05D000923 6.5e-09 63.2 39 82.1
MD16G1145600 Malus domestica HOM05D001092 ORTHO05D000923 6.5e-09 63.2 39 82.1
HPP92_008100 Vanilla planifolia HOM05D001092 ORTHO05D000923 6.5e-09 63.2 39 82.1
GSVIVG01017643001 Vitis vinifera HOM05D001092 ORTHO05D000923 8.4e-09 62.8 39 82.1
arahy.Tifrunner.gnm1.ann1.8VA958 Arachis hypogaea HOM05D001092 ORTHO05D000923 1.1e-08 62.4 39 76.9
arahy.Tifrunner.gnm1.ann1.NU1CTT Arachis hypogaea HOM05D001092 ORTHO05D000923 1.1e-08 62.4 39 76.9
Ca_21396_v3 Cicer arietinum L. HOM05D001092 ORTHO05D000923 1.1e-08 62.4 39 79.5
DCAR_026963 Daucus carota HOM05D001092 ORTHO05D000923 1.1e-08 62.4 43 74.4
Lj4g0014122 Lotus japonicus HOM05D001092 ORTHO05D000923 1.1e-08 62.4 39 79.5
Medtr4g123110 Medicago truncatula HOM05D001092 ORTHO05D000923 1.1e-08 62.4 39 79.5
TWI73G1237 Tripterygium wilfordii HOM05D001092 ORTHO05D000923 1.1e-08 62.4 39 79.5
AUR62038227 Chenopodium quinoa HOM05D001092 ORTHO05D000923 1.4e-08 62.0 41 73.2
ClCG05G006770 Citrullus lanatus HOM05D001092 ORTHO05D000923 1.4e-08 62.0 39 79.5
MELO3C006741.2 Cucumis melo HOM05D001092 ORTHO05D000923 1.4e-08 62.0 39 79.5
CsaV3_3G015400 Cucumis sativus L. HOM05D001092 ORTHO05D000923 1.4e-08 62.0 39 79.5
MD16G1145300 Malus domestica HOM05D001092 ORTHO05D000923 1.4e-08 62.0 37 83.8
RcHm_v2.0_Chr4g0426501 Rosa chinensis HOM05D001092 ORTHO05D000923 1.4e-08 62.0 39 76.9
Aqoxy4G01581 Aquilegia oxysepala HOM05D001092 ORTHO05D000923 1.9e-08 61.6 40 75.0
BolC8t47372H Brassica oleracea HOM05D001092 ORTHO05D000923 1.9e-08 61.6 41 70.7
Cpa.g.sc146.62 Carica papaya HOM05D001092 ORTHO05D000923 1.9e-08 61.6 39 76.9
Haze_00822 Corylus avellana HOM05D001092 ORTHO05D000923 1.9e-08 61.6 39 79.5
FvH4_4g20980 Fragaria vesca HOM05D001092 ORTHO05D000923 1.9e-08 61.6 39 74.4
TPR.G12636 Trifolium pratense HOM05D001092 ORTHO05D000923 1.9e-08 61.6 39 76.9
CiPaw.01G132700 Carya illinoinensis HOM05D001092 ORTHO05D000923 2.5e-08 61.2 39 79.5
Gohir.A10G175801 Gossypium hirsutum HOM05D001092 ORTHO05D000923 2.5e-08 61.2 41 73.2
Gohir.D02G062000 Gossypium hirsutum HOM05D001092 ORTHO05D000923 2.5e-08 61.2 39 74.4
Gohir.D10G182400 Gossypium hirsutum HOM05D001092 ORTHO05D000923 2.5e-08 61.2 41 73.2
Gorai.011G204400 Gossypium raimondii HOM05D001092 ORTHO05D000923 2.5e-08 61.2 41 73.2
Lalb_Chr13g0298791 Lupinus albus HOM05D001092 ORTHO05D000923 2.5e-08 61.2 39 76.9
MD13G1146800 Malus domestica HOM05D001092 ORTHO05D000923 2.5e-08 61.2 39 82.1
PSO761G0196 Papaver somniferum HOM05D001092 ORTHO05D000923 2.5e-08 61.2 39 79.5
DCAR_023379 Daucus carota HOM05D001092 ORTHO05D000923 3.2e-08 60.8 41 75.6
Psat0s45g0040 Pisum sativum HOM05D001092 ORTHO05D000923 3.2e-08 60.8 39 76.9
Thecc.04G308400 Theobroma cacao HOM05D001092 ORTHO05D000923 3.2e-08 60.8 39 76.9
AUR62003914 Chenopodium quinoa HOM05D001092 ORTHO05D000923 4.2e-08 60.5 41 70.7
Ciclev10004114m.g Citrus clementina HOM05D001092 ORTHO05D000923 5.5e-08 60.1 39 71.8
HanXRQChr01g0031031 Helianthus annuus HOM05D001092 ORTHO05D000923 5.5e-08 60.1 41 75.6
HanXRQChr10g0319861 Helianthus annuus HOM05D001092 ORTHO05D000923 5.5e-08 60.1 41 75.6
Lsat_1_v5_gn_1_40321 Lactuca sativa HOM05D001092 ORTHO05D000923 5.5e-08 60.1 41 75.6
Os02g0470400 Oryza sativa ssp. japonica HOM05D001092 ORTHO05D000923 5.5e-08 60.1 40 72.5
Phvul.003G119100 Phaseolus vulgaris HOM05D001092 ORTHO05D000923 5.5e-08 60.1 39 76.9
Potri.008G100600 Populus trichocarpa HOM05D001092 ORTHO05D000923 5.5e-08 60.1 39 74.4
Sabra08G0076100 Salix brachista HOM05D001092 ORTHO05D000923 5.5e-08 60.1 39 74.4
Glyma.07G233100 Glycine max HOM05D001092 ORTHO05D000923 7.1e-08 59.7 39 76.9
Lalb_Chr12g0200731 Lupinus albus HOM05D001092 ORTHO05D000923 7.1e-08 59.7 39 71.8
Manes.03G209800 Manihot esculenta HOM05D001092 ORTHO05D000923 7.1e-08 59.7 39 74.4
QL06p013490 Quercus lobata HOM05D001092 ORTHO05D000923 7.1e-08 59.7 39 79.5
CANSAT78G0281 Cannabis sativa HOM05D001092 ORTHO05D000923 9.3e-08 59.3 39 76.9
CDE02G0350 Ceratophyllum demersum HOM05D001092 ORTHO05D000923 9.3e-08 59.3 39 74.4
Nn2g14503 Nelumbo nucifera HOM05D001092 ORTHO05D000923 1.2e-07 58.9 39 76.9
PSO210G1589 Papaver somniferum HOM05D001092 ORTHO05D000923 1.2e-07 58.9 39 76.9
PGR004G1484 Punica granatum HOM05D001092 ORTHO05D000923 1.2e-07 58.9 39 71.8
Aqoxy2G02587 Aquilegia oxysepala HOM05D001092 ORTHO05D000923 1.6e-07 58.5 40 72.5
MSTRG.3839 Avicennia marina HOM05D001092 ORTHO05D000923 1.6e-07 58.5 39 74.4
Mapoly0076s0037 Marchantia polymorpha HOM05D001092 ORTHO05D000923 1.6e-07 58.5 40 65.0
THA.LOC104802610 Tarenaya hassleriana HOM05D001092 ORTHO05D000923 1.6e-07 58.5 39 71.8
Atru.chr4.3076 Acer truncatum HOM05D001092 ORTHO05D000923 2.1e-07 58.2 39 71.8
AL1G54650 Arabidopsis lyrata HOM05D001092 ORTHO05D000923 2.1e-07 58.2 39 69.2
AT1G48090 Arabidopsis thaliana HOM05D001092 ORTHO05D000923 2.1e-07 58.2 39 69.2
BcaC07g37172 Brassica carinata HOM05D001092 ORTHO05D000923 2.1e-07 58.2 39 69.2
A06p04720 Brassica napus HOM05D001092 ORTHO05D000923 2.1e-07 58.2 39 69.2
A08p05240 Brassica napus HOM05D001092 ORTHO05D000923 2.1e-07 58.2 39 69.2
A08p06860 Brassica napus HOM05D001092 ORTHO05D000923 2.1e-07 58.2 39 69.2
C06p02470 Brassica napus HOM05D001092 ORTHO05D000923 2.1e-07 58.2 39 69.2
C08p05520 Brassica napus HOM05D001092 ORTHO05D000923 2.1e-07 58.2 39 69.2
BolC6t35374H Brassica oleracea HOM05D001092 ORTHO05D000923 2.1e-07 58.2 39 69.2
BraA06t23675Z Brassica rapa HOM05D001092 ORTHO05D000923 2.1e-07 58.2 39 69.2
BraA08t32540Z Brassica rapa HOM05D001092 ORTHO05D000923 2.1e-07 58.2 39 69.2
BraA08t32704Z Brassica rapa HOM05D001092 ORTHO05D000923 2.1e-07 58.2 39 69.2
Carub.0001s3719 Capsella rubella HOM05D001092 ORTHO05D000923 2.1e-07 58.2 39 69.2
CARHR037730 Cardamine hirsuta HOM05D001092 ORTHO05D000923 2.1e-07 58.2 39 69.2
Thhalv10011170m.g Eutrema salsugineum HOM05D001092 ORTHO05D000923 2.1e-07 58.2 39 69.2
Sp1g35040 Schrenkiella parvula HOM05D001092 ORTHO05D000923 2.1e-07 58.2 39 69.2
BcaB04g17465 Brassica carinata HOM05D001092 ORTHO05D000923 2.7e-07 57.8 39 69.2
Migut.G00017 Erythranthe guttata HOM05D001092 ORTHO05D000923 2.7e-07 57.8 39 71.8
Nitab4.5_0001977g0050 Nicotiana tabacum HOM05D001092 ORTHO05D000923 2.7e-07 57.8 39 71.8
Oeu033616.1 Olea europaea HOM05D001092 ORTHO05D000923 2.7e-07 57.8 39 69.2
SGA_v2.0_scaffold157G37366 Striga asiatica HOM05D001092 ORTHO05D000923 2.7e-07 57.8 39 71.8
Aa31LG10G5640 Aethionema arabicum HOM05D001092 ORTHO05D000923 3.5e-07 57.4 39 69.2
Lj6C698G8 Lonicera japonica HOM05D001092 ORTHO05D000923 3.5e-07 57.4 39 71.8
Rhsim04G0245300 Rhododendron simsii HOM05D001092 ORTHO05D000923 3.5e-07 57.4 39 74.4
SalBow8G5116 Salvia bowleyana HOM05D001092 ORTHO05D000923 3.5e-07 57.4 39 69.2
Actinidia18490 Actinidia chinensis HOM05D001092 ORTHO05D000923 4.6e-07 57.0 39 76.9
Cc03_g00400 Coffea canephora HOM05D001092 ORTHO05D000923 4.6e-07 57.0 39 69.2
Sc03g0001750 Simmondsia chinensis HOM05D001092 ORTHO05D000923 4.6e-07 57.0 39 66.7
CAN.G424.45 Capsicum annuum HOM05D001092 ORTHO05D000923 6.0e-07 56.6 39 69.2
CAN.G824.5 Capsicum annuum HOM05D001092 ORTHO05D000923 6.0e-07 56.6 39 69.2
Pp3c9_20320 Physcomitrium patens HOM05D001092 ORTHO05D000923 6.0e-07 56.6 40 65.0
vmacro07983 Vaccinium macrocarpon HOM05D001092 ORTHO05D000923 6.0e-07 56.6 39 74.4
Zm00001eb203090 Zea mays HOM05D001092 ORTHO05D000923 6.0e-07 56.6 40 62.5
CSS0029198 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 7.9e-07 56.2 39 74.4
Peaxi162Scf00290g00313 Petunia axillaris HOM05D001092 ORTHO05D000923 1.3e-06 55.5 39 69.2
Solyc09g009370.4 Solanum lycopersicum HOM05D001092 ORTHO05D000923 1.3e-06 55.5 39 69.2
Sopen09g004100 Solanum pennellii HOM05D001092 ORTHO05D000923 1.3e-06 55.5 39 69.2
CSS0037314 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 2.3e-06 54.7 39 71.8
SMO240G0011 Selaginella moellendorffii HOM05D001092 ORTHO05D000923 2.3e-06 54.7 40 62.5
SMO340G0042 Selaginella moellendorffii HOM05D001092 ORTHO05D000923 2.3e-06 54.7 40 62.5
Nn2g14500 Nelumbo nucifera HOM05D001092 ORTHO05D000923 3.0e-06 54.3 39 74.4
Nn2g16048 Nelumbo nucifera HOM05D001092 ORTHO05D000923 3.0e-06 54.3 39 74.4
SHI00082 Sapria himalayana HOM05D001092 ORTHO05D000923 3.9e-06 53.9 39 66.7


User provided reference genes

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